Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13530

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,080,150	+				-0.5
3,080,150	+				-0.9
3,080,151	-				-1.3
3,080,172	+		DDA3937_RS13525	0.11	-0.1
3,080,204	+		DDA3937_RS13525	0.14	+0.5
3,080,205	-		DDA3937_RS13525	0.14	-1.4
3,080,205	-		DDA3937_RS13525	0.14	-2.6
3,080,206	+		DDA3937_RS13525	0.14	-2.1
3,080,207	-		DDA3937_RS13525	0.14	-3.4
3,080,207	-				-1.6
3,080,272	-		DDA3937_RS13525	0.21	+0.5
3,080,272	-		DDA3937_RS13525	0.21	-1.8
3,080,272	-		DDA3937_RS13525	0.21	-1.3
3,080,272	-		DDA3937_RS13525	0.21	-1.6
3,080,296	+		DDA3937_RS13525	0.23	-1.3
3,080,297	-		DDA3937_RS13525	0.23	-1.6
3,080,319	+		DDA3937_RS13525	0.25	+0.7
3,080,319	+		DDA3937_RS13525	0.25	-0.6
3,080,319	+		DDA3937_RS13525	0.25	-1.0
3,080,320	-				-0.9
3,080,320	-				-0.9
3,080,377	+		DDA3937_RS13525	0.31	-2.9
3,080,377	+				-0.3
3,080,378	-		DDA3937_RS13525	0.31	-0.9
3,080,427	-		DDA3937_RS13525	0.35	-1.6
3,080,427	-		DDA3937_RS13525	0.35	-2.0
3,080,428	+		DDA3937_RS13525	0.35	-1.3
3,080,428	+		DDA3937_RS13525	0.35	-2.3
3,080,428	+		DDA3937_RS13525	0.35	-1.3
3,080,428	+		DDA3937_RS13525	0.35	-1.4
3,080,429	-		DDA3937_RS13525	0.36	-1.2
3,080,429	-		DDA3937_RS13525	0.36	-2.6
3,080,429	-		DDA3937_RS13525	0.36	-0.0
3,080,429	-		DDA3937_RS13525	0.36	-0.9
3,080,477	+		DDA3937_RS13525	0.40	-0.7
3,080,492	+		DDA3937_RS13525	0.42	-1.6
3,080,492	+		DDA3937_RS13525	0.42	-2.1
3,080,534	+		DDA3937_RS13525	0.45	+0.8
3,080,534	+		DDA3937_RS13525	0.45	-1.6
3,080,534	+		DDA3937_RS13525	0.45	-2.7
3,080,534	+		DDA3937_RS13525	0.45	-3.4
3,080,535	-		DDA3937_RS13525	0.46	-2.1
3,080,543	+		DDA3937_RS13525	0.46	-0.5
3,080,543	+		DDA3937_RS13525	0.46	-1.0
3,080,752	+		DDA3937_RS13525	0.66	-0.9
3,080,752	+		DDA3937_RS13525	0.66	-2.1
3,080,752	+		DDA3937_RS13525	0.66	-0.3
3,080,752	+		DDA3937_RS13525	0.66	-1.3
3,080,753	-		DDA3937_RS13525	0.66	-0.9
3,080,753	-		DDA3937_RS13525	0.66	-1.6
3,080,753	-		DDA3937_RS13525	0.66	-2.4
3,080,753	-		DDA3937_RS13525	0.66	-2.8
3,080,753	-		DDA3937_RS13525	0.66	-2.5
3,080,753	-		DDA3937_RS13525	0.66	-2.6
3,080,753	-		DDA3937_RS13525	0.66	-3.3
3,080,774	+				-0.3
3,080,775	-		DDA3937_RS13525	0.68	-1.3
3,080,778	+		DDA3937_RS13525	0.69	-2.7
3,080,778	+		DDA3937_RS13525	0.69	-1.1
3,080,779	-		DDA3937_RS13525	0.69	-2.1
3,080,832	-		DDA3937_RS13525	0.74	-1.4
3,080,977	-		DDA3937_RS13525	0.88	-0.6
3,080,977	-		DDA3937_RS13525	0.88	-0.4
3,081,035	+				+0.4
3,081,035	+				-0.6
3,081,036	-				-2.1
3,081,036	-				-1.6
3,081,036	-				-3.6
3,081,036	-				-3.1
3,081,038	+				-1.3
3,081,038	+				-0.3
3,081,038	+				-0.9
3,081,038	+				+1.2
3,081,066	+				-2.7
3,081,087	+				-2.6
3,081,087	+				-1.6
3,081,087	+				-1.8
3,081,087	+				-0.3
3,081,088	-				-1.3
3,081,088	-				-1.3
3,081,088	-				-1.8
3,081,090	+				-2.6
3,081,091	-				-3.3
3,081,091	-				-0.3
3,081,091	-				-3.0
3,081,108	+				-3.5
3,081,109	-				-2.4
3,081,109	-				-2.1
3,081,129	+				+0.5
3,081,200	+		DDA3937_RS13530	0.11	-2.6
3,081,354	-		DDA3937_RS13530	0.28	-2.1
3,081,491	+		DDA3937_RS13530	0.44	-1.8
3,081,491	+		DDA3937_RS13530	0.44	-0.3
3,081,492	-		DDA3937_RS13530	0.44	-1.8
3,081,503	-		DDA3937_RS13530	0.45	-0.4
3,081,503	-		DDA3937_RS13530	0.45	+1.0
3,081,503	-		DDA3937_RS13530	0.45	-1.4
3,081,532	+		DDA3937_RS13530	0.49	-0.3
3,081,532	+				-0.8
3,081,532	+		DDA3937_RS13530	0.49	-1.4
3,081,533	-		DDA3937_RS13530	0.49	-0.1
3,081,549	+		DDA3937_RS13530	0.51	-0.7
3,081,549	+		DDA3937_RS13530	0.51	-2.1
3,081,579	+		DDA3937_RS13530	0.54	-1.0
3,081,579	+		DDA3937_RS13530	0.54	-1.7
3,081,580	-		DDA3937_RS13530	0.54	-0.6
3,081,715	+		DDA3937_RS13530	0.70	-0.4
3,081,715	+		DDA3937_RS13530	0.70	-1.5
3,081,715	+		DDA3937_RS13530	0.70	-1.8
3,081,715	+		DDA3937_RS13530	0.70	-0.6
3,081,715	+		DDA3937_RS13530	0.70	-1.3
3,081,715	+		DDA3937_RS13530	0.70	-0.4
3,081,716	-		DDA3937_RS13530	0.70	-0.3
3,081,716	-		DDA3937_RS13530	0.70	+0.2
3,081,716	-		DDA3937_RS13530	0.70	-2.5
3,081,765	+		DDA3937_RS13530	0.75	-1.6
3,081,765	+		DDA3937_RS13530	0.75	-3.1
3,081,819	+		DDA3937_RS13530	0.82	-0.3
3,081,820	-		DDA3937_RS13530	0.82	-1.0
3,081,820	-		DDA3937_RS13530	0.82	-0.8
3,081,820	-		DDA3937_RS13530	0.82	-0.6
3,081,820	-		DDA3937_RS13530	0.82	-1.4
3,081,835	+		DDA3937_RS13530	0.83	-1.6
3,081,835	+		DDA3937_RS13530	0.83	-0.6
3,081,836	-		DDA3937_RS13530	0.84	-1.2
3,081,867	+				-1.6
3,081,868	-		DDA3937_RS13530	0.87	-0.5
3,081,871	+		DDA3937_RS13530	0.88	-1.7
3,081,871	+		DDA3937_RS13530	0.88	-2.3
3,081,871	+		DDA3937_RS13530	0.88	-1.1
3,081,871	+		DDA3937_RS13530	0.88	+0.4
3,081,872	-		DDA3937_RS13530	0.88	+0.7
3,081,872	-		DDA3937_RS13530	0.88	-1.4
3,081,872	-		DDA3937_RS13530	0.88	+0.2
3,081,872	-		DDA3937_RS13530	0.88	-1.8
3,081,872	-		DDA3937_RS13530	0.88	-1.8
3,081,932	+				-1.7
3,081,937	+				-0.3
3,081,937	+				-0.3
3,081,938	-				-1.9
3,081,943	+				-1.7
3,081,943	+				-1.1
3,081,944	-				-1.8
3,081,944	-				-0.7
3,081,970	+				+0.4
3,081,970	+				-1.6
3,081,980	-				-0.0
3,081,980	-				-0.7
3,082,038	-				+0.2
3,082,038	-				-0.4
3,082,039	+				-0.6
3,082,039	+				-0.3
3,082,039	+				-1.0
3,082,039	+				-2.4
3,082,039	+				-0.3
3,082,039	+				-1.8
3,082,039	+				+0.3
3,082,039	+				+0.3
3,082,039	+				-0.6
3,082,040	-				+2.3
3,082,040	-				-0.8
3,082,040	-				-1.5
3,082,040	-				-0.2
3,082,040	-				-0.9
3,082,040	-				-0.6
3,082,040	-				+0.7
3,082,040	-				+0.0
3,082,040	-				-0.5
3,082,043	+				-0.1
3,082,044	-				-0.2
3,082,047	-				-1.4
3,082,062	+				+0.5
3,082,177	-				-0.2
3,082,177	-				-1.3
3,082,177	-				-0.5
3,082,239	+				-0.3
3,082,239	+				+0.2
3,082,239	+				-0.7
3,082,239	+				+0.1
3,082,240	-				-1.7
3,082,240	-				+0.0
3,082,240	-				-0.9
3,082,240	-				-1.2
3,082,241	+				+0.3
3,082,252	+				-0.7
3,082,252	+				-2.0
3,082,252	+				+0.2
3,082,253	-				-0.1
3,082,258	+				-2.3
3,082,258	+				-0.1
3,082,258	+				-1.5
3,082,259	-				-0.1
3,082,259	-				+0.0
3,082,259	-				-0.8
3,082,259	-				+2.0
3,082,260	+				-0.0
3,082,260	+				-1.6
3,082,260	+				-0.3
3,082,261	-				+1.0
3,082,261	-				-0.8
3,082,261	-				-0.5
3,082,261	-				-1.4
3,082,261	-				-0.9
3,082,261	-				-1.2
3,082,261	-				-2.2
3,082,294	+				-1.8
3,082,303	-				-1.3
3,082,303	-				+0.2
3,082,332	-				-0.3
3,082,339	+				-0.5
3,082,339	+				+0.7
3,082,339	+				-2.2
3,082,340	-				-0.1
3,082,340	-				-0.3
3,082,340	-				+0.5
3,082,351	+				-0.1
3,082,351	+				-0.9
3,082,351	+				-1.0
3,082,352	-				+1.3
3,082,352	-				-2.3
3,082,352	-				-1.4
3,082,352	-				-0.8
3,082,352	-				+0.7
3,082,352	-				-2.3
3,082,352	-				-1.3
3,082,352	-				+0.1
3,082,352	-				-0.7
3,082,352	-				+0.2
3,082,355	+				+0.3
3,082,355	+				-0.6
3,082,356	-				+0.7
3,082,356	-				+0.3
3,082,356	-				+0.7
3,082,476	-				-1.0
3,082,476	-				-0.8
3,082,504	-				-0.6
3,082,507	+				+0.0
3,082,523	+				+0.5
3,082,524	-				-0.2
3,082,567	+				+0.4
3,082,570	+				-0.4
3,082,588	+				-1.1
3,082,625	+				+2.3
3,082,625	+				-0.4
3,082,626	-				-3.0
3,082,626	-				-0.5
3,082,640	+				-1.4
3,082,662	+				-0.0
3,082,662	+				-0.7
3,082,663	-				-0.5
3,082,707	+				+1.1
3,082,735	+				-0.7
3,082,735	+				-0.8
3,082,736	-				-1.3
3,082,736	-				-0.4