Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13525

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,079,064	-		DDA3937_RS13515	0.13	-1.1
3,079,174	+		DDA3937_RS13515	0.31	-0.6
3,079,174	+		DDA3937_RS13515	0.31	-0.4
3,079,240	+		DDA3937_RS13515	0.41	-2.8
3,079,250	-		DDA3937_RS13515	0.42	-2.1
3,079,273	-		DDA3937_RS13515	0.46	-2.1
3,079,273	-		DDA3937_RS13515	0.46	-3.3
3,079,276	+		DDA3937_RS13515	0.46	-2.1
3,079,276	+		DDA3937_RS13515	0.46	-2.0
3,079,277	-		DDA3937_RS13515	0.47	-1.0
3,079,360	+		DDA3937_RS13515	0.59	-2.1
3,079,360	+		DDA3937_RS13515	0.59	-2.7
3,079,448	+		DDA3937_RS13515	0.73	-1.3
3,079,448	+		DDA3937_RS13515	0.73	-1.8
3,079,452	+		DDA3937_RS13515	0.74	-2.1
3,079,452	+		DDA3937_RS13515	0.74	-3.4
3,079,452	+		DDA3937_RS13515	0.74	-1.4
3,079,452	+		DDA3937_RS13515	0.74	-1.7
3,079,452	+		DDA3937_RS13515	0.74	-1.8
3,079,452	+		DDA3937_RS13515	0.74	-0.8
3,079,453	-		DDA3937_RS13515	0.74	-3.1
3,079,453	-		DDA3937_RS13515	0.74	-2.3
3,079,453	-		DDA3937_RS13515	0.74	-1.4
3,079,453	-		DDA3937_RS13515	0.74	-1.7
3,079,453	-		DDA3937_RS13515	0.74	-0.4
3,079,453	-		DDA3937_RS13515	0.74	-1.8
3,079,453	-		DDA3937_RS13515	0.74	-1.5
3,079,453	-		DDA3937_RS13515	0.74	-1.6
3,079,453	-		DDA3937_RS13515	0.74	-1.5
3,079,453	-		DDA3937_RS13515	0.74	-0.5
3,079,453	-		DDA3937_RS13515	0.74	-0.9
3,079,453	-		DDA3937_RS13515	0.74	-2.3
3,079,511	+		DDA3937_RS13515	0.83	-3.0
3,079,570	+				-2.1
3,079,570	+				+0.3
3,079,632	+				-2.8
3,079,632	+				-1.8
3,079,632	+				-1.0
3,079,632	+				-0.1
3,079,632	+				-2.3
3,079,632	+				-2.3
3,079,632	+				-3.3
3,079,633	-				-0.3
3,079,633	-				+0.3
3,079,633	-				-0.6
3,079,633	-				+0.0
3,079,633	-				-1.0
3,079,636	+				-0.3
3,079,636	+				-0.6
3,079,637	-				-1.3
3,079,637	-				-0.8
3,079,637	-				-2.3
3,079,637	-				-1.3
3,079,637	-				-1.5
3,079,637	-				-0.8
3,079,657	+				-0.3
3,079,696	+		DDA3937_RS13520	0.17	-0.9
3,079,704	+		DDA3937_RS13520	0.19	-1.6
3,079,704	+		DDA3937_RS13520	0.19	-0.4
3,079,704	+		DDA3937_RS13520	0.19	-0.9
3,079,704	+				+0.7
3,079,704	+				+0.2
3,079,705	-		DDA3937_RS13520	0.19	+0.3
3,079,705	-		DDA3937_RS13520	0.19	-0.6
3,079,705	-		DDA3937_RS13520	0.19	-0.3
3,079,705	-		DDA3937_RS13520	0.19	-0.7
3,079,705	-		DDA3937_RS13520	0.19	-1.4
3,079,705	-		DDA3937_RS13520	0.19	-1.0
3,079,736	-		DDA3937_RS13520	0.27	-0.1
3,079,736	-				-1.3
3,079,738	+		DDA3937_RS13520	0.27	-1.1
3,079,739	-		DDA3937_RS13520	0.28	+0.3
3,079,834	+		DDA3937_RS13520	0.52	+1.2
3,079,835	-		DDA3937_RS13520	0.52	-0.3
3,079,835	-		DDA3937_RS13520	0.52	-0.7
3,079,835	-		DDA3937_RS13520	0.52	-0.1
3,079,835	-		DDA3937_RS13520	0.52	-0.6
3,079,837	+		DDA3937_RS13520	0.53	+1.1
3,079,837	+		DDA3937_RS13520	0.53	-0.9
3,079,838	-		DDA3937_RS13520	0.53	-0.9
3,079,946	+				-0.8
3,079,947	-		DDA3937_RS13520	0.81	-0.9
3,079,947	-		DDA3937_RS13520	0.81	-2.2
3,079,963	+		DDA3937_RS13520	0.85	-1.2
3,079,963	+		DDA3937_RS13520	0.85	-1.3
3,079,963	+		DDA3937_RS13520	0.85	-1.5
3,079,964	-		DDA3937_RS13520	0.85	-1.7
3,079,964	-		DDA3937_RS13520	0.85	-0.8
3,079,964	-		DDA3937_RS13520	0.85	+0.3
3,080,012	-				+0.4
3,080,020	+				-1.0
3,080,020	+				-1.8
3,080,020	+				-0.8
3,080,021	-				-0.9
3,080,021	-				-1.5
3,080,024	+				-0.7
3,080,025	-				-1.0
3,080,025	-				-1.0
3,080,025	-				+0.2
3,080,025	-				-1.4
3,080,025	-				-0.4
3,080,030	+				+0.7
3,080,030	+				-1.1
3,080,031	-				-2.1
3,080,031	-				-1.0
3,080,033	+				-0.9
3,080,033	+				-1.8
3,080,033	+				-0.5
3,080,033	+				-0.4
3,080,034	-				-1.2
3,080,034	-				-0.9
3,080,037	-				-0.5
3,080,037	-				-1.4
3,080,037	-				-2.4
3,080,056	+				-1.1
3,080,056	+				+0.5
3,080,056	+				-1.1
3,080,056	+				-1.7
3,080,056	+				-0.7
3,080,056	+				-1.1
3,080,056	+				+0.7
3,080,056	+				-1.7
3,080,056	+				-0.8
3,080,056	+				+0.2
3,080,056	+				-1.2
3,080,056	+				-1.0
3,080,056	+				-1.3
3,080,056	+				-0.7
3,080,056	+				-0.8
3,080,057	-				-0.9
3,080,057	-				-1.7
3,080,057	-				+0.3
3,080,057	-				-0.7
3,080,057	-				-1.1
3,080,057	-				-1.7
3,080,057	-				-0.6
3,080,057	-				+2.1
3,080,058	+				-0.8
3,080,059	-				-0.4
3,080,059	-				+0.4
3,080,059	-				-0.1
3,080,060	+				-0.9
3,080,060	+				+0.1
3,080,060	+				-0.8
3,080,060	+				-2.6
3,080,060	+				-0.3
3,080,060	+				+0.6
3,080,060	+				-4.0
3,080,060	+				-0.5
3,080,060	+				-0.7
3,080,060	+				+0.5
3,080,060	+				-0.8
3,080,060	+				-1.1
3,080,060	+				-1.7
3,080,060	+				-1.1
3,080,061	-				-0.7
3,080,061	-				-0.1
3,080,061	-				-3.1
3,080,061	-				-1.0
3,080,061	-				-2.8
3,080,061	-				-0.8
3,080,061	-				+1.2
3,080,061	-				-2.1
3,080,061	-				-1.1
3,080,061	-				-2.2
3,080,061	-				-0.8
3,080,061	-				-0.3
3,080,061	-				-0.4
3,080,061	-				-0.8
3,080,064	+				-0.8
3,080,064	+				+0.2
3,080,064	+				-0.9
3,080,064	+				-0.5
3,080,064	+				-0.8
3,080,064	+				-1.6
3,080,064	+				+0.1
3,080,064	+				-1.8
3,080,065	-				+0.7
3,080,065	-				+0.2
3,080,065	-				-0.8
3,080,150	+				-0.5
3,080,150	+				-0.9
3,080,151	-				-1.3
3,080,172	+		DDA3937_RS13525	0.11	-0.1
3,080,204	+		DDA3937_RS13525	0.14	+0.5
3,080,205	-		DDA3937_RS13525	0.14	-1.4
3,080,205	-		DDA3937_RS13525	0.14	-2.6
3,080,206	+		DDA3937_RS13525	0.14	-2.1
3,080,207	-		DDA3937_RS13525	0.14	-3.4
3,080,207	-				-1.6
3,080,272	-		DDA3937_RS13525	0.21	+0.5
3,080,272	-		DDA3937_RS13525	0.21	-1.8
3,080,272	-		DDA3937_RS13525	0.21	-1.3
3,080,272	-		DDA3937_RS13525	0.21	-1.6
3,080,296	+		DDA3937_RS13525	0.23	-1.3
3,080,297	-		DDA3937_RS13525	0.23	-1.6
3,080,319	+		DDA3937_RS13525	0.25	+0.7
3,080,319	+		DDA3937_RS13525	0.25	-0.6
3,080,319	+		DDA3937_RS13525	0.25	-1.0
3,080,320	-				-0.9
3,080,320	-				-0.9
3,080,377	+		DDA3937_RS13525	0.31	-2.9
3,080,377	+				-0.3
3,080,378	-		DDA3937_RS13525	0.31	-0.9
3,080,427	-		DDA3937_RS13525	0.35	-1.6
3,080,427	-		DDA3937_RS13525	0.35	-2.0
3,080,428	+		DDA3937_RS13525	0.35	-1.3
3,080,428	+		DDA3937_RS13525	0.35	-2.3
3,080,428	+		DDA3937_RS13525	0.35	-1.3
3,080,428	+		DDA3937_RS13525	0.35	-1.4
3,080,429	-		DDA3937_RS13525	0.36	-1.2
3,080,429	-		DDA3937_RS13525	0.36	-2.6
3,080,429	-		DDA3937_RS13525	0.36	-0.0
3,080,429	-		DDA3937_RS13525	0.36	-0.9
3,080,477	+		DDA3937_RS13525	0.40	-0.7
3,080,492	+		DDA3937_RS13525	0.42	-1.6
3,080,492	+		DDA3937_RS13525	0.42	-2.1
3,080,534	+		DDA3937_RS13525	0.45	+0.8
3,080,534	+		DDA3937_RS13525	0.45	-1.6
3,080,534	+		DDA3937_RS13525	0.45	-2.7
3,080,534	+		DDA3937_RS13525	0.45	-3.4
3,080,535	-		DDA3937_RS13525	0.46	-2.1
3,080,543	+		DDA3937_RS13525	0.46	-0.5
3,080,543	+		DDA3937_RS13525	0.46	-1.0
3,080,752	+		DDA3937_RS13525	0.66	-0.9
3,080,752	+		DDA3937_RS13525	0.66	-2.1
3,080,752	+		DDA3937_RS13525	0.66	-0.3
3,080,752	+		DDA3937_RS13525	0.66	-1.3
3,080,753	-		DDA3937_RS13525	0.66	-0.9
3,080,753	-		DDA3937_RS13525	0.66	-1.6
3,080,753	-		DDA3937_RS13525	0.66	-2.4
3,080,753	-		DDA3937_RS13525	0.66	-2.8
3,080,753	-		DDA3937_RS13525	0.66	-2.5
3,080,753	-		DDA3937_RS13525	0.66	-2.6
3,080,753	-		DDA3937_RS13525	0.66	-3.3
3,080,774	+				-0.3
3,080,775	-		DDA3937_RS13525	0.68	-1.3
3,080,778	+		DDA3937_RS13525	0.69	-2.7
3,080,778	+		DDA3937_RS13525	0.69	-1.1
3,080,779	-		DDA3937_RS13525	0.69	-2.1
3,080,832	-		DDA3937_RS13525	0.74	-1.4
3,080,977	-		DDA3937_RS13525	0.88	-0.6
3,080,977	-		DDA3937_RS13525	0.88	-0.4
3,081,035	+				+0.4
3,081,035	+				-0.6
3,081,036	-				-2.1
3,081,036	-				-1.6
3,081,036	-				-3.6
3,081,036	-				-3.1
3,081,038	+				-1.3
3,081,038	+				-0.3
3,081,038	+				-0.9
3,081,038	+				+1.2
3,081,066	+				-2.7
3,081,087	+				-2.6
3,081,087	+				-1.6
3,081,087	+				-1.8
3,081,087	+				-0.3
3,081,088	-				-1.3
3,081,088	-				-1.3
3,081,088	-				-1.8
3,081,090	+				-2.6
3,081,091	-				-3.3
3,081,091	-				-0.3
3,081,091	-				-3.0
3,081,108	+				-3.5
3,081,109	-				-2.4
3,081,109	-				-2.1
3,081,129	+				+0.5
3,081,200	+		DDA3937_RS13530	0.11	-2.6
3,081,354	-		DDA3937_RS13530	0.28	-2.1
3,081,491	+		DDA3937_RS13530	0.44	-1.8
3,081,491	+		DDA3937_RS13530	0.44	-0.3
3,081,492	-		DDA3937_RS13530	0.44	-1.8
3,081,503	-		DDA3937_RS13530	0.45	-0.4
3,081,503	-		DDA3937_RS13530	0.45	+1.0
3,081,503	-		DDA3937_RS13530	0.45	-1.4
3,081,532	+		DDA3937_RS13530	0.49	-0.3
3,081,532	+				-0.8
3,081,532	+		DDA3937_RS13530	0.49	-1.4
3,081,533	-		DDA3937_RS13530	0.49	-0.1
3,081,549	+		DDA3937_RS13530	0.51	-0.7
3,081,549	+		DDA3937_RS13530	0.51	-2.1
3,081,579	+		DDA3937_RS13530	0.54	-1.0
3,081,579	+		DDA3937_RS13530	0.54	-1.7
3,081,580	-		DDA3937_RS13530	0.54	-0.6
3,081,715	+		DDA3937_RS13530	0.70	-0.4
3,081,715	+		DDA3937_RS13530	0.70	-1.5
3,081,715	+		DDA3937_RS13530	0.70	-1.8
3,081,715	+		DDA3937_RS13530	0.70	-0.6
3,081,715	+		DDA3937_RS13530	0.70	-1.3
3,081,715	+		DDA3937_RS13530	0.70	-0.4
3,081,716	-		DDA3937_RS13530	0.70	-0.3
3,081,716	-		DDA3937_RS13530	0.70	+0.2
3,081,716	-		DDA3937_RS13530	0.70	-2.5
3,081,765	+		DDA3937_RS13530	0.75	-1.6
3,081,765	+		DDA3937_RS13530	0.75	-3.1
3,081,819	+		DDA3937_RS13530	0.82	-0.3
3,081,820	-		DDA3937_RS13530	0.82	-1.0
3,081,820	-		DDA3937_RS13530	0.82	-0.8
3,081,820	-		DDA3937_RS13530	0.82	-0.6
3,081,820	-		DDA3937_RS13530	0.82	-1.4
3,081,835	+		DDA3937_RS13530	0.83	-1.6
3,081,835	+		DDA3937_RS13530	0.83	-0.6
3,081,836	-		DDA3937_RS13530	0.84	-1.2
3,081,867	+				-1.6
3,081,868	-		DDA3937_RS13530	0.87	-0.5
3,081,871	+		DDA3937_RS13530	0.88	-1.7
3,081,871	+		DDA3937_RS13530	0.88	-2.3
3,081,871	+		DDA3937_RS13530	0.88	-1.1
3,081,871	+		DDA3937_RS13530	0.88	+0.4
3,081,872	-		DDA3937_RS13530	0.88	+0.7
3,081,872	-		DDA3937_RS13530	0.88	-1.4
3,081,872	-		DDA3937_RS13530	0.88	+0.2
3,081,872	-		DDA3937_RS13530	0.88	-1.8
3,081,872	-		DDA3937_RS13530	0.88	-1.8
3,081,932	+				-1.7
3,081,937	+				-0.3
3,081,937	+				-0.3
3,081,938	-				-1.9
3,081,943	+				-1.7
3,081,943	+				-1.1
3,081,944	-				-1.8
3,081,944	-				-0.7
3,081,970	+				+0.4
3,081,970	+				-1.6
3,081,980	-				-0.0
3,081,980	-				-0.7
3,082,038	-				+0.2
3,082,038	-				-0.4
3,082,039	+				-0.6
3,082,039	+				-0.3
3,082,039	+				-1.0
3,082,039	+				-2.4
3,082,039	+				-0.3
3,082,039	+				-1.8
3,082,039	+				+0.3
3,082,039	+				+0.3
3,082,039	+				-0.6
3,082,040	-				+2.3
3,082,040	-				-0.8
3,082,040	-				-1.5
3,082,040	-				-0.2
3,082,040	-				-0.9
3,082,040	-				-0.6
3,082,040	-				+0.7
3,082,040	-				+0.0
3,082,040	-				-0.5
3,082,043	+				-0.1
3,082,044	-				-0.2
3,082,047	-				-1.4
3,082,062	+				+0.5