Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS13155 and DDA3937_RS13160 are separated by 578 nucleotides DDA3937_RS13160 and DDA3937_RS13165 are separated by 75 nucleotides DDA3937_RS13165 and DDA3937_RS13170 are separated by 180 nucleotides
DDA3937_RS13155: DDA3937_RS13155 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 2,998,721 to 2,999,677
_RS13155
DDA3937_RS13160: DDA3937_RS13160 - ribonuclease E, at 3,000,256 to 3,003,453
_RS13160
DDA3937_RS13165: DDA3937_RS13165 - antibiotic biosynthesis monooxygenase, at 3,003,529 to 3,003,816
_RS13165
DDA3937_RS13170: DDA3937_RS13170 - dihydroorotase, at 3,003,997 to 3,005,040
_RS13170
Position (kb)
3000
3001
3002
3003
3004 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2999.322 kb on - strand, within DDA3937_RS13155 at 2999.360 kb on - strand at 2999.360 kb on - strand, within DDA3937_RS13155 at 2999.376 kb on + strand, within DDA3937_RS13155 at 2999.376 kb on + strand, within DDA3937_RS13155 at 2999.376 kb on + strand, within DDA3937_RS13155 at 2999.376 kb on + strand, within DDA3937_RS13155 at 2999.376 kb on + strand, within DDA3937_RS13155 at 2999.377 kb on - strand, within DDA3937_RS13155 at 2999.377 kb on - strand, within DDA3937_RS13155 at 2999.389 kb on - strand, within DDA3937_RS13155 at 2999.476 kb on + strand, within DDA3937_RS13155 at 2999.477 kb on - strand, within DDA3937_RS13155 at 2999.528 kb on - strand, within DDA3937_RS13155 at 2999.531 kb on + strand, within DDA3937_RS13155 at 2999.691 kb on - strand at 2999.694 kb on + strand at 2999.694 kb on + strand at 2999.695 kb on - strand at 2999.695 kb on - strand at 2999.695 kb on - strand at 2999.725 kb on + strand at 2999.725 kb on + strand at 2999.725 kb on + strand at 2999.725 kb on + strand at 2999.731 kb on + strand at 2999.731 kb on + strand at 2999.731 kb on + strand at 2999.731 kb on + strand at 2999.732 kb on - strand at 2999.732 kb on - strand at 2999.732 kb on - strand at 2999.748 kb on + strand at 2999.748 kb on + strand at 2999.749 kb on - strand at 2999.756 kb on + strand at 2999.757 kb on - strand at 2999.757 kb on - strand at 2999.757 kb on - strand at 2999.833 kb on - strand at 2999.833 kb on - strand at 2999.834 kb on + strand at 2999.834 kb on + strand at 2999.834 kb on + strand at 2999.834 kb on + strand at 2999.835 kb on - strand at 2999.880 kb on + strand at 2999.934 kb on + strand at 3000.088 kb on + strand at 3001.753 kb on + strand, within DDA3937_RS13160 at 3001.851 kb on + strand, within DDA3937_RS13160 at 3002.101 kb on - strand, within DDA3937_RS13160 at 3002.473 kb on + strand, within DDA3937_RS13160 at 3003.036 kb on + strand at 3003.036 kb on + strand, within DDA3937_RS13160 at 3003.036 kb on + strand, within DDA3937_RS13160 at 3003.037 kb on - strand, within DDA3937_RS13160 at 3003.287 kb on - strand at 3003.325 kb on + strand at 3003.326 kb on - strand at 3003.326 kb on - strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.455 kb on - strand at 3003.455 kb on - strand at 3003.455 kb on - strand at 3003.457 kb on + strand at 3003.457 kb on + strand at 3003.458 kb on - strand at 3003.458 kb on - strand at 3003.458 kb on - strand at 3003.459 kb on + strand at 3003.489 kb on + strand at 3003.490 kb on - strand at 3003.499 kb on - strand at 3003.499 kb on - strand at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.706 kb on + strand, within DDA3937_RS13165 at 3003.706 kb on + strand, within DDA3937_RS13165 at 3003.768 kb on + strand, within DDA3937_RS13165 at 3003.783 kb on + strand, within DDA3937_RS13165 at 3003.783 kb on + strand, within DDA3937_RS13165 at 3003.784 kb on - strand, within DDA3937_RS13165 at 3003.819 kb on + strand at 3003.819 kb on + strand at 3003.820 kb on - strand at 3003.820 kb on - strand at 3003.820 kb on - strand at 3003.822 kb on + strand at 3003.822 kb on + strand at 3003.822 kb on + strand at 3003.823 kb on - strand at 3003.823 kb on - strand at 3003.833 kb on + strand at 3003.834 kb on - strand at 3003.835 kb on + strand at 3003.835 kb on + strand at 3003.835 kb on + strand at 3003.836 kb on - strand at 3003.836 kb on - strand at 3003.836 kb on - strand at 3003.858 kb on + strand at 3003.859 kb on - strand at 3003.859 kb on - strand at 3003.861 kb on - strand at 3003.916 kb on + strand at 3003.930 kb on - strand at 3003.930 kb on - strand at 3003.935 kb on + strand at 3003.936 kb on - strand at 3003.936 kb on - strand at 3003.948 kb on - strand at 3003.971 kb on + strand at 3003.972 kb on - strand at 3003.972 kb on - strand at 3003.972 kb on - strand at 3004.082 kb on + strand at 3004.082 kb on + strand at 3004.082 kb on + strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.085 kb on + strand at 3004.086 kb on - strand at 3004.090 kb on + strand at 3004.091 kb on - strand at 3004.091 kb on - strand at 3004.093 kb on - strand at 3004.093 kb on - strand at 3004.143 kb on + strand, within DDA3937_RS13170 at 3004.143 kb on + strand, within DDA3937_RS13170 at 3004.143 kb on + strand, within DDA3937_RS13170 at 3004.234 kb on + strand, within DDA3937_RS13170 at 3004.266 kb on + strand, within DDA3937_RS13170 at 3004.267 kb on - strand, within DDA3937_RS13170 at 3004.290 kb on - strand, within DDA3937_RS13170 at 3004.290 kb on - strand, within DDA3937_RS13170 at 3004.363 kb on - strand, within DDA3937_RS13170 at 3004.363 kb on - strand, within DDA3937_RS13170 at 3004.363 kb on - strand, within DDA3937_RS13170 at 3004.366 kb on + strand, within DDA3937_RS13170 at 3004.367 kb on - strand, within DDA3937_RS13170
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 2,999,322 - DDA3937_RS13155 0.63 -0.6 2,999,360 - +1.3 2,999,360 - DDA3937_RS13155 0.67 -2.0 2,999,376 + DDA3937_RS13155 0.68 +1.1 2,999,376 + DDA3937_RS13155 0.68 -0.6 2,999,376 + DDA3937_RS13155 0.68 -0.0 2,999,376 + DDA3937_RS13155 0.68 -0.9 2,999,376 + DDA3937_RS13155 0.68 -0.3 2,999,377 - DDA3937_RS13155 0.69 -1.3 2,999,377 - DDA3937_RS13155 0.69 +1.9 2,999,389 - DDA3937_RS13155 0.70 +0.0 2,999,476 + DDA3937_RS13155 0.79 -0.1 2,999,477 - DDA3937_RS13155 0.79 -0.7 2,999,528 - DDA3937_RS13155 0.84 +0.5 2,999,531 + DDA3937_RS13155 0.85 -0.6 2,999,691 - +0.4 2,999,694 + -0.9 2,999,694 + +0.1 2,999,695 - +0.1 2,999,695 - +1.1 2,999,695 - -0.6 2,999,725 + +0.1 2,999,725 + +0.1 2,999,725 + +1.3 2,999,725 + +0.5 2,999,731 + +1.2 2,999,731 + -0.1 2,999,731 + +0.0 2,999,731 + -0.4 2,999,732 - +0.1 2,999,732 - +0.2 2,999,732 - -0.1 2,999,748 + -0.0 2,999,748 + -1.9 2,999,749 - +2.1 2,999,756 + -1.2 2,999,757 - -0.2 2,999,757 - -0.7 2,999,757 - +0.2 2,999,833 - -1.4 2,999,833 - +1.1 2,999,834 + -0.3 2,999,834 + -2.1 2,999,834 + -1.6 2,999,834 + -2.1 2,999,835 - -1.3 2,999,880 + -0.3 2,999,934 + -0.4 3,000,088 + -0.3 3,001,753 + DDA3937_RS13160 0.47 -1.0 3,001,851 + DDA3937_RS13160 0.50 -0.0 3,002,101 - DDA3937_RS13160 0.58 -0.8 3,002,473 + DDA3937_RS13160 0.69 -1.3 3,003,036 + -1.3 3,003,036 + DDA3937_RS13160 0.87 -1.3 3,003,036 + DDA3937_RS13160 0.87 -0.0 3,003,037 - DDA3937_RS13160 0.87 -0.3 3,003,287 - +1.1 3,003,325 + -0.5 3,003,326 - +0.1 3,003,326 - -0.4 3,003,454 + -1.3 3,003,454 + +0.9 3,003,454 + +1.2 3,003,454 + +1.5 3,003,454 + -0.2 3,003,454 + -0.5 3,003,455 - -1.2 3,003,455 - +0.7 3,003,455 - -1.6 3,003,457 + -0.3 3,003,457 + -1.6 3,003,458 - -1.3 3,003,458 - -0.9 3,003,458 - +0.5 3,003,459 + -0.8 3,003,489 + -0.6 3,003,490 - -1.7 3,003,499 - -1.3 3,003,499 - -0.9 3,003,702 - DDA3937_RS13165 0.60 -0.3 3,003,702 - DDA3937_RS13165 0.60 -2.2 3,003,702 - DDA3937_RS13165 0.60 -0.7 3,003,702 - DDA3937_RS13165 0.60 -0.3 3,003,702 - DDA3937_RS13165 0.60 +1.8 3,003,706 + DDA3937_RS13165 0.61 -0.6 3,003,706 + DDA3937_RS13165 0.61 -0.5 3,003,768 + DDA3937_RS13165 0.83 -2.1 3,003,783 + DDA3937_RS13165 0.88 +0.2 3,003,783 + DDA3937_RS13165 0.88 -0.4 3,003,784 - DDA3937_RS13165 0.89 -3.1 3,003,819 + -3.2 3,003,819 + +0.6 3,003,820 - +0.2 3,003,820 - -0.1 3,003,820 - -0.3 3,003,822 + -0.6 3,003,822 + +1.3 3,003,822 + +1.2 3,003,823 - +0.1 3,003,823 - -0.7 3,003,833 + -0.6 3,003,834 - -0.3 3,003,835 + -1.7 3,003,835 + -0.1 3,003,835 + -0.6 3,003,836 - -0.2 3,003,836 - -1.7 3,003,836 - -0.2 3,003,858 + -1.1 3,003,859 - +0.7 3,003,859 - -0.9 3,003,861 - +0.7 3,003,916 + -1.9 3,003,930 - +0.4 3,003,930 - -0.7 3,003,935 + -1.1 3,003,936 - -0.8 3,003,936 - -0.4 3,003,948 - -1.4 3,003,971 + +0.4 3,003,972 - -0.7 3,003,972 - -1.3 3,003,972 - -1.4 3,004,082 + -2.6 3,004,082 + -1.7 3,004,082 + -0.9 3,004,083 - -1.3 3,004,083 - -2.4 3,004,083 - -3.1 3,004,083 - -1.6 3,004,083 - -1.6 3,004,083 - -3.1 3,004,083 - +0.1 3,004,085 + -2.9 3,004,086 - -2.1 3,004,090 + -3.1 3,004,091 - -1.7 3,004,091 - -0.3 3,004,093 - -2.3 3,004,093 - +0.1 3,004,143 + DDA3937_RS13170 0.14 -0.3 3,004,143 + DDA3937_RS13170 0.14 -1.7 3,004,143 + DDA3937_RS13170 0.14 -4.3 3,004,234 + DDA3937_RS13170 0.23 -2.8 3,004,266 + DDA3937_RS13170 0.26 -2.9 3,004,267 - DDA3937_RS13170 0.26 -1.7 3,004,290 - DDA3937_RS13170 0.28 -4.5 3,004,290 - DDA3937_RS13170 0.28 -2.0 3,004,363 - DDA3937_RS13170 0.35 -1.7 3,004,363 - DDA3937_RS13170 0.35 +0.2 3,004,363 - DDA3937_RS13170 0.35 -1.9 3,004,366 + DDA3937_RS13170 0.35 -3.1 3,004,367 - DDA3937_RS13170 0.35 -2.9
Or see this region's nucleotide sequence