Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12260

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,784,297	-				-0.8
2,784,297	-				+1.6
2,784,306	+				+0.6
2,784,306	+				-1.9
2,784,306	+				-0.8
2,784,306	+				+0.2
2,784,306	+				+1.1
2,784,306	+				+0.3
2,784,306	+				-0.4
2,784,307	-				-0.9
2,784,318	+				+0.9
2,784,318	+				+0.6
2,784,318	+				-1.9
2,784,318	+				+0.3
2,784,319	-				-1.9
2,784,319	-				+0.4
2,784,319	-				+0.8
2,784,322	+				+1.0
2,784,322	+				-0.9
2,784,322	+				+1.5
2,784,323	-				-0.4
2,784,343	+				+0.6
2,784,343	+				-0.4
2,784,354	+				-0.0
2,784,354	+				+0.6
2,784,354	+				-0.6
2,784,354	+				-1.9
2,784,354	+				-1.2
2,784,355	-				+0.7
2,784,357	+				-2.2
2,784,404	+				-0.3
2,784,405	-				+0.5
2,784,416	+				+0.1
2,784,422	+				-0.7
2,784,423	-				-0.1
2,784,439	-				-0.9
2,784,443	+				+0.1
2,784,444	-				-0.4
2,784,487	-				-2.2
2,784,543	+		DDA3937_RS12255	0.12	-0.9
2,784,544	-		DDA3937_RS12255	0.12	+0.6
2,784,544	-		DDA3937_RS12255	0.12	-0.8
2,784,556	-		DDA3937_RS12255	0.14	-1.7
2,784,608	+		DDA3937_RS12255	0.21	-0.5
2,784,613	+		DDA3937_RS12255	0.22	+0.7
2,784,614	-		DDA3937_RS12255	0.22	+0.6
2,784,701	+		DDA3937_RS12255	0.34	-0.9
2,784,701	+		DDA3937_RS12255	0.34	+0.3
2,784,701	+		DDA3937_RS12255	0.34	-0.3
2,784,702	-		DDA3937_RS12255	0.34	+0.9
2,784,702	-		DDA3937_RS12255	0.34	-3.1
2,784,702	-		DDA3937_RS12255	0.34	-0.2
2,784,717	-		DDA3937_RS12255	0.36	+0.3
2,784,782	+		DDA3937_RS12255	0.45	-2.1
2,784,782	+		DDA3937_RS12255	0.45	-1.7
2,784,783	-		DDA3937_RS12255	0.45	-1.3
2,784,783	-		DDA3937_RS12255	0.45	+1.0
2,784,800	-		DDA3937_RS12255	0.47	-1.4
2,784,822	+		DDA3937_RS12255	0.51	-0.8
2,784,823	-		DDA3937_RS12255	0.51	+0.3
2,784,828	+		DDA3937_RS12255	0.51	+0.3
2,784,828	+		DDA3937_RS12255	0.51	-0.6
2,784,829	-		DDA3937_RS12255	0.52	-0.5
2,784,829	-		DDA3937_RS12255	0.52	-1.5
2,784,857	+		DDA3937_RS12255	0.55	-0.1
2,784,857	+		DDA3937_RS12255	0.55	-0.9
2,784,858	-		DDA3937_RS12255	0.56	+0.9
2,784,872	-		DDA3937_RS12255	0.57	-1.1
2,785,045	+		DDA3937_RS12255	0.82	-0.4
2,785,045	+		DDA3937_RS12255	0.82	+0.0
2,785,045	+		DDA3937_RS12255	0.82	-0.8
2,785,045	+				+1.0
2,785,046	-		DDA3937_RS12255	0.82	-1.6
2,785,046	-		DDA3937_RS12255	0.82	-2.5
2,785,046	-		DDA3937_RS12255	0.82	-0.7
2,785,046	-		DDA3937_RS12255	0.82	-0.0
2,785,048	+		DDA3937_RS12255	0.82	-1.4
2,785,048	+		DDA3937_RS12255	0.82	-1.9
2,785,048	+		DDA3937_RS12255	0.82	+0.6
2,785,048	+		DDA3937_RS12255	0.82	-0.4
2,785,049	-		DDA3937_RS12255	0.82	-0.2
2,785,067	+		DDA3937_RS12255	0.85	+1.6
2,785,068	-		DDA3937_RS12255	0.85	-0.2
2,785,150	+				-0.5
2,785,150	+				-0.3
2,785,151	-				-0.8
2,785,151	-				-2.7
2,785,151	-				-0.3
2,785,192	+				+1.1
2,785,192	+				-0.2
2,785,193	-				-1.4
2,785,193	-				-0.7
2,785,196	+				+0.6
2,785,196	+				-1.7
2,785,197	-				+0.6
2,785,261	-				-0.2
2,785,373	+		DDA3937_RS12260	0.13	-0.6
2,785,373	+		DDA3937_RS12260	0.13	-0.9
2,785,374	-		DDA3937_RS12260	0.13	-0.5
2,785,374	-		DDA3937_RS12260	0.13	-2.9
2,785,374	-		DDA3937_RS12260	0.13	-0.1
2,785,374	-		DDA3937_RS12260	0.13	-1.4
2,785,393	+		DDA3937_RS12260	0.14	+0.9
2,785,393	+		DDA3937_RS12260	0.14	-0.6
2,785,393	+		DDA3937_RS12260	0.14	-0.1
2,785,393	+		DDA3937_RS12260	0.14	-0.3
2,785,393	+		DDA3937_RS12260	0.14	-0.4
2,785,394	-		DDA3937_RS12260	0.14	-1.6
2,785,394	-		DDA3937_RS12260	0.14	-0.9
2,785,394	-		DDA3937_RS12260	0.14	-0.4
2,785,394	-		DDA3937_RS12260	0.14	-1.4
2,785,394	-		DDA3937_RS12260	0.14	-0.4
2,785,474	+		DDA3937_RS12260	0.20	-0.7
2,785,474	+		DDA3937_RS12260	0.20	+1.0
2,785,474	+		DDA3937_RS12260	0.20	+0.1
2,785,474	+		DDA3937_RS12260	0.20	-0.2
2,785,474	+		DDA3937_RS12260	0.20	+0.0
2,785,475	-		DDA3937_RS12260	0.20	-0.2
2,785,475	-		DDA3937_RS12260	0.20	+1.5
2,785,475	-		DDA3937_RS12260	0.20	-0.5
2,785,475	-		DDA3937_RS12260	0.20	-1.9
2,785,476	+		DDA3937_RS12260	0.20	+0.1
2,785,476	+		DDA3937_RS12260	0.20	-1.5
2,785,609	+		DDA3937_RS12260	0.30	+0.8
2,785,610	-		DDA3937_RS12260	0.30	+0.6
2,785,644	+		DDA3937_RS12260	0.32	-0.2
2,785,644	+				-1.4
2,785,644	+		DDA3937_RS12260	0.32	-0.2
2,785,644	+		DDA3937_RS12260	0.32	-2.2
2,785,644	+		DDA3937_RS12260	0.32	+0.3
2,785,645	-		DDA3937_RS12260	0.32	-1.2
2,785,645	-		DDA3937_RS12260	0.32	-0.9
2,785,645	-		DDA3937_RS12260	0.32	+0.0
2,785,645	-		DDA3937_RS12260	0.32	+0.6
2,785,645	-		DDA3937_RS12260	0.32	-0.8
2,785,691	+		DDA3937_RS12260	0.35	-1.4
2,785,806	+		DDA3937_RS12260	0.43	-0.1
2,785,807	-		DDA3937_RS12260	0.43	-0.8
2,785,866	+		DDA3937_RS12260	0.48	-1.5
2,785,866	+		DDA3937_RS12260	0.48	-0.2
2,785,866	+		DDA3937_RS12260	0.48	+0.1
2,785,866	+		DDA3937_RS12260	0.48	-0.9
2,785,867	-		DDA3937_RS12260	0.48	+2.8
2,785,867	-		DDA3937_RS12260	0.48	-0.6
2,785,867	-		DDA3937_RS12260	0.48	-0.7
2,785,872	+		DDA3937_RS12260	0.48	-0.5
2,785,872	+		DDA3937_RS12260	0.48	+0.2
2,785,894	-		DDA3937_RS12260	0.50	-0.5
2,785,894	-		DDA3937_RS12260	0.50	-1.0
2,785,996	+		DDA3937_RS12260	0.57	+0.3
2,785,997	-		DDA3937_RS12260	0.57	-0.1
2,786,001	+		DDA3937_RS12260	0.57	-1.4
2,786,001	+		DDA3937_RS12260	0.57	-0.1
2,786,001	+		DDA3937_RS12260	0.57	+0.8
2,786,002	-				-0.4
2,786,002	-		DDA3937_RS12260	0.57	+0.1
2,786,036	+		DDA3937_RS12260	0.60	-0.1
2,786,036	+		DDA3937_RS12260	0.60	-1.3
2,786,036	+		DDA3937_RS12260	0.60	-0.4
2,786,036	+		DDA3937_RS12260	0.60	-0.6
2,786,036	+		DDA3937_RS12260	0.60	-0.7
2,786,036	+		DDA3937_RS12260	0.60	-1.9
2,786,036	+		DDA3937_RS12260	0.60	-0.2
2,786,036	+		DDA3937_RS12260	0.60	-0.9
2,786,036	+		DDA3937_RS12260	0.60	+0.2
2,786,036	+		DDA3937_RS12260	0.60	-0.9
2,786,037	-		DDA3937_RS12260	0.60	-1.9
2,786,037	-		DDA3937_RS12260	0.60	-1.3
2,786,037	-		DDA3937_RS12260	0.60	-0.9
2,786,037	-		DDA3937_RS12260	0.60	-0.4
2,786,037	-		DDA3937_RS12260	0.60	+1.1
2,786,085	+		DDA3937_RS12260	0.63	-0.5
2,786,090	+		DDA3937_RS12260	0.63	-1.7
2,786,124	+		DDA3937_RS12260	0.66	-0.3
2,786,124	+		DDA3937_RS12260	0.66	-1.7
2,786,125	-		DDA3937_RS12260	0.66	-0.9
2,786,125	-		DDA3937_RS12260	0.66	+0.4
2,786,143	-		DDA3937_RS12260	0.67	-0.4
2,786,148	+		DDA3937_RS12260	0.67	-1.4
2,786,148	+		DDA3937_RS12260	0.67	+0.2
2,786,148	+		DDA3937_RS12260	0.67	-0.4
2,786,193	+		DDA3937_RS12260	0.71	-1.6
2,786,193	+		DDA3937_RS12260	0.71	-0.7
2,786,193	+		DDA3937_RS12260	0.71	+0.2
2,786,193	+		DDA3937_RS12260	0.71	-0.2
2,786,193	+		DDA3937_RS12260	0.71	-0.1
2,786,194	-		DDA3937_RS12260	0.71	-0.0
2,786,194	-		DDA3937_RS12260	0.71	-0.5
2,786,194	-		DDA3937_RS12260	0.71	-2.5
2,786,194	-		DDA3937_RS12260	0.71	-0.3
2,786,194	-		DDA3937_RS12260	0.71	-0.6
2,786,194	-		DDA3937_RS12260	0.71	-0.0
2,786,253	+		DDA3937_RS12260	0.75	-1.6
2,786,253	+		DDA3937_RS12260	0.75	-1.2
2,786,254	-		DDA3937_RS12260	0.75	+1.2
2,786,267	-		DDA3937_RS12260	0.76	-0.2
2,786,398	-		DDA3937_RS12260	0.85	+0.5
2,786,410	+		DDA3937_RS12260	0.86	+0.3
2,786,653	+				+0.6
2,786,654	-				-0.3
2,786,672	+				-2.7
2,786,673	-				-0.1
2,786,706	+		DDA3937_RS12265	0.14	-1.1
2,786,707	-		DDA3937_RS12265	0.14	-1.0
2,786,995	+		DDA3937_RS12265	0.55	-0.0
2,786,996	-		DDA3937_RS12265	0.55	-0.5
2,787,004	+		DDA3937_RS12265	0.57	-1.2
2,787,005	-		DDA3937_RS12265	0.57	-0.9
2,787,015	+		DDA3937_RS12265	0.58	-0.5
2,787,016	-		DDA3937_RS12265	0.58	-0.9
2,787,082	+		DDA3937_RS12265	0.68	-0.2
2,787,120	-		DDA3937_RS12265	0.73	-0.1
2,787,122	+		DDA3937_RS12265	0.74	+0.7
2,787,122	+		DDA3937_RS12265	0.74	-0.1
2,787,123	-		DDA3937_RS12265	0.74	+0.5
2,787,167	-		DDA3937_RS12265	0.80	+0.0
2,787,197	+		DDA3937_RS12265	0.84	-0.5
2,787,282	+				-0.1
2,787,283	-				-0.9
2,787,283	-				-0.1
2,787,283	-				-1.3
2,787,292	+				+0.2
2,787,292	+				-1.2
2,787,292	+				-0.4
2,787,360	+				-0.5
2,787,360	+				-0.5
2,787,360	+				-2.4
2,787,360	+				+2.2
2,787,361	-				+0.4
2,787,361	-				-0.7
2,787,361	-				+0.0
2,787,361	-				+0.4
2,787,361	-				-0.8
2,787,361	-				-0.8
2,787,363	+				-0.3
2,787,363	+				-1.0
2,787,364	-				-0.9
2,787,364	-				+0.1
2,787,391	+				+0.4
2,787,486	-				-0.2
2,787,486	-				-0.1