Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11740

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,665,576	+		DDA3937_RS11735	0.75	-1.4
2,665,597	+				-2.0
2,665,597	+		DDA3937_RS11735	0.77	+0.6
2,665,598	-				+0.8
2,665,598	-		DDA3937_RS11735	0.77	-0.4
2,665,603	+		DDA3937_RS11735	0.77	-0.5
2,665,603	+		DDA3937_RS11735	0.77	-2.6
2,665,627	+		DDA3937_RS11735	0.79	-0.8
2,665,627	+		DDA3937_RS11735	0.79	-0.1
2,665,628	-		DDA3937_RS11735	0.79	-0.2
2,665,628	-		DDA3937_RS11735	0.79	+0.4
2,665,644	+		DDA3937_RS11735	0.81	+0.2
2,665,798	+				+0.6
2,665,798	+				-0.5
2,665,798	+				-1.0
2,665,799	-				-0.4
2,665,801	-				-0.8
2,665,838	+				-2.4
2,665,838	+				-3.2
2,665,838	+				-1.2
2,665,838	+				-0.8
2,665,838	+				+0.3
2,665,838	+				-1.7
2,665,838	+				-0.0
2,665,839	-				-1.1
2,665,983	+				-1.2
2,665,983	+				-0.7
2,665,983	+				-0.4
2,665,984	-				-2.2
2,666,000	-				-0.4
2,666,091	+				-0.3
2,666,092	-				+0.6
2,666,092	-				+0.2
2,666,102	+				-1.0
2,666,102	+				+0.7
2,666,168	-				-1.0
2,666,206	+				-0.8
2,666,217	+				+0.6
2,666,218	-				-0.3
2,666,241	+				-1.0
2,666,242	-				+0.1
2,666,242	-				-1.4
2,666,272	+				-0.5
2,666,277	-				+1.7
2,666,354	-				+0.0
2,666,358	-				+0.5
2,666,419	+				+0.3
2,666,420	-				+0.8
2,666,483	+				-0.6
2,666,560	-				-1.0
2,666,576	+				+0.2
2,666,588	+				+0.1
2,666,588	+				-0.4
2,666,593	-				-1.2
2,666,593	-				-2.2
2,666,593	-				-0.5
2,666,612	+				+0.0
2,666,612	+				-1.3
2,666,613	-				+0.9
2,666,613	-				-0.2
2,666,615	+				-1.1
2,666,691	-				-1.1
2,666,693	+				-0.1
2,666,704	-				-1.6
2,666,726	+				-0.1
2,666,727	-				+0.9
2,666,732	+				-1.4
2,666,735	+				+0.6
2,666,735	+				-1.0
2,666,736	-				+1.4
2,666,738	+				-0.1
2,666,741	+				-1.4
2,666,742	-				-1.0
2,666,782	-		DDA3937_RS11740	0.11	+0.6
2,666,783	+		DDA3937_RS11740	0.11	-1.3
2,666,794	-		DDA3937_RS11740	0.11	+0.8
2,666,794	-		DDA3937_RS11740	0.11	-3.1
2,666,807	+		DDA3937_RS11740	0.12	-0.6
2,666,808	-		DDA3937_RS11740	0.12	-1.4
2,666,808	-		DDA3937_RS11740	0.12	-0.2
2,666,828	-		DDA3937_RS11740	0.13	+0.3
2,666,891	-		DDA3937_RS11740	0.16	-0.2
2,666,922	+		DDA3937_RS11740	0.18	-2.0
2,666,949	-		DDA3937_RS11740	0.19	-1.4
2,667,017	+		DDA3937_RS11740	0.23	-3.8
2,667,017	+				-1.4
2,667,017	+		DDA3937_RS11740	0.23	+0.0
2,667,017	+		DDA3937_RS11740	0.23	+0.1
2,667,017	+		DDA3937_RS11740	0.23	-0.7
2,667,018	-		DDA3937_RS11740	0.23	-0.4
2,667,018	-		DDA3937_RS11740	0.23	-1.0
2,667,026	+		DDA3937_RS11740	0.23	-0.8
2,667,075	-		DDA3937_RS11740	0.26	-0.4
2,667,267	+		DDA3937_RS11740	0.35	-0.3
2,667,268	-		DDA3937_RS11740	0.35	+0.0
2,667,276	+		DDA3937_RS11740	0.36	+0.9
2,667,289	-		DDA3937_RS11740	0.36	+1.4
2,667,289	-		DDA3937_RS11740	0.36	-1.7
2,667,289	-		DDA3937_RS11740	0.36	-1.6
2,667,290	+		DDA3937_RS11740	0.36	+0.0
2,667,290	+		DDA3937_RS11740	0.36	-0.1
2,667,290	+		DDA3937_RS11740	0.36	-1.6
2,667,291	-		DDA3937_RS11740	0.36	-0.8
2,667,375	+		DDA3937_RS11740	0.41	+1.2
2,667,375	+		DDA3937_RS11740	0.41	-0.8
2,667,375	+		DDA3937_RS11740	0.41	+0.2
2,667,376	-		DDA3937_RS11740	0.41	-0.8
2,667,467	-		DDA3937_RS11740	0.45	-2.2
2,668,160	+		DDA3937_RS11740	0.80	+0.1
2,668,178	+		DDA3937_RS11740	0.81	-0.1
2,668,553	-				-1.4
2,668,565	+				-0.4
2,668,566	-				+0.0
2,668,566	-				-3.1
2,668,566	-				+1.1
2,668,566	-				-0.9
2,668,580	+				+0.6
2,668,580	+				+0.1
2,668,581	-				-0.2
2,668,593	+				-1.0
2,668,594	-				-1.0
2,668,598	-				-0.2
2,668,649	-				-1.7
2,668,651	+				-0.4
2,668,651	+				-0.4
2,668,726	+				-0.3
2,668,727	-				-1.1
2,668,729	+				-0.5
2,668,730	-				-1.1
2,668,738	-				-1.2
2,668,771	-				-0.7
2,668,880	+				-0.3
2,668,880	+				+0.2
2,668,940	+				-2.6
2,668,941	-				-0.1
2,668,941	-				+0.6
2,668,941	-				-0.3
2,668,941	-				-0.1
2,668,942	+				-2.7
2,668,942	+				-1.5
2,668,947	-				-0.4
2,668,947	-				-2.6
2,668,947	-				-1.3
2,668,947	-				+0.3
2,668,955	+				-1.2
2,668,955	+				-0.1
2,668,956	-				+0.5
2,669,002	-				-0.1
2,669,002	-				+1.2
2,669,002	-				+0.4
2,669,002	-				-0.1
2,669,089	+				-0.6
2,669,089	+				+1.8
2,669,089	+				-1.0
2,669,090	-				+0.2
2,669,090	-				-1.4
2,669,092	-				-0.7
2,669,141	+				-1.4
2,669,141	+				+0.6
2,669,145	-				+0.1
2,669,232	+				-0.1
2,669,232	+				-0.2
2,669,279	-		DDA3937_RS11745	0.11	+0.0
2,669,304	+		DDA3937_RS11745	0.12	+1.8
2,669,394	+		DDA3937_RS11745	0.17	+0.2
2,669,419	+		DDA3937_RS11745	0.18	+0.3
2,669,419	+		DDA3937_RS11745	0.18	-1.0
2,669,419	+		DDA3937_RS11745	0.18	+0.1
2,669,419	+		DDA3937_RS11745	0.18	+0.4
2,669,420	-		DDA3937_RS11745	0.18	+0.2
2,669,420	-		DDA3937_RS11745	0.18	+0.2
2,669,421	+		DDA3937_RS11745	0.18	-0.1
2,669,421	+		DDA3937_RS11745	0.18	-0.3
2,669,421	+		DDA3937_RS11745	0.18	-1.1
2,669,421	+		DDA3937_RS11745	0.18	-1.2
2,669,421	+		DDA3937_RS11745	0.18	-0.2
2,669,422	-		DDA3937_RS11745	0.18	-1.4
2,669,422	-		DDA3937_RS11745	0.18	+0.4
2,669,422	-		DDA3937_RS11745	0.18	-1.8
2,669,422	-		DDA3937_RS11745	0.18	-0.7
2,669,493	+				+0.2