Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09660

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,178,680	+		DDA3937_RS09655	0.59	-2.3
2,178,681	-		DDA3937_RS09655	0.59	-1.3
2,178,768	-		DDA3937_RS09655	0.63	-0.9
2,178,835	+		DDA3937_RS09655	0.65	-0.3
2,178,836	-		DDA3937_RS09655	0.66	+0.0
2,178,844	+		DDA3937_RS09655	0.66	-0.8
2,178,844	+		DDA3937_RS09655	0.66	-2.1
2,178,844	+		DDA3937_RS09655	0.66	-1.7
2,178,845	-		DDA3937_RS09655	0.66	-0.3
2,178,845	-		DDA3937_RS09655	0.66	-0.2
2,178,845	-		DDA3937_RS09655	0.66	-2.7
2,178,873	-		DDA3937_RS09655	0.67	-1.8
2,178,901	+		DDA3937_RS09655	0.68	-3.2
2,179,049	-		DDA3937_RS09655	0.75	-2.8
2,179,060	+		DDA3937_RS09655	0.75	-2.3
2,179,060	+		DDA3937_RS09655	0.75	-1.6
2,179,061	-		DDA3937_RS09655	0.75	-1.8
2,179,061	-		DDA3937_RS09655	0.75	-1.2
2,179,061	-		DDA3937_RS09655	0.75	-2.1
2,179,061	-		DDA3937_RS09655	0.75	-2.1
2,179,091	+		DDA3937_RS09655	0.77	-1.9
2,179,105	+		DDA3937_RS09655	0.77	-1.4
2,179,105	+		DDA3937_RS09655	0.77	-0.3
2,179,163	+		DDA3937_RS09655	0.80	-1.0
2,179,163	+		DDA3937_RS09655	0.80	-0.1
2,179,164	-		DDA3937_RS09655	0.80	+0.1
2,179,164	-		DDA3937_RS09655	0.80	-0.8
2,179,165	+		DDA3937_RS09655	0.80	-1.3
2,179,166	-		DDA3937_RS09655	0.80	-1.8
2,179,177	-		DDA3937_RS09655	0.80	-1.9
2,179,196	+		DDA3937_RS09655	0.81	-1.8
2,179,197	-		DDA3937_RS09655	0.81	-1.5
2,179,201	+		DDA3937_RS09655	0.82	-2.3
2,179,246	+		DDA3937_RS09655	0.83	-3.1
2,179,247	-		DDA3937_RS09655	0.84	-0.8
2,179,254	-		DDA3937_RS09655	0.84	+0.1
2,179,355	+		DDA3937_RS09655	0.88	-2.8
2,179,355	+		DDA3937_RS09655	0.88	-3.3
2,179,355	+		DDA3937_RS09655	0.88	-1.2
2,179,355	+		DDA3937_RS09655	0.88	-2.0
2,179,355	+		DDA3937_RS09655	0.88	-2.3
2,179,356	-		DDA3937_RS09655	0.88	-2.8
2,179,356	-		DDA3937_RS09655	0.88	-2.4
2,179,357	+		DDA3937_RS09655	0.88	-1.2
2,179,358	-		DDA3937_RS09655	0.88	-2.1
2,179,358	-		DDA3937_RS09655	0.88	-3.1
2,179,376	+		DDA3937_RS09655	0.89	-2.8
2,179,376	+		DDA3937_RS09655	0.89	-1.2
2,179,376	+		DDA3937_RS09655	0.89	-2.5
2,179,377	-		DDA3937_RS09655	0.89	-0.3
2,179,377	-		DDA3937_RS09655	0.89	-2.2
2,179,389	+		DDA3937_RS09655	0.90	-1.2
2,179,390	-		DDA3937_RS09655	0.90	-2.8
2,179,390	-		DDA3937_RS09655	0.90	-1.1
2,179,467	-				-2.6
2,179,467	-				-0.9
2,179,522	+				-0.3
2,179,522	+				-2.0
2,179,523	-				-1.4
2,179,545	+				-1.6
2,179,545	+				-1.1
2,179,545	+				-2.9
2,179,545	+				-2.3
2,179,546	-				-0.3
2,179,546	-				-3.5
2,179,546	-				-1.8
2,179,577	+				-2.0
2,179,578	-				-0.5
2,179,578	-				+0.1
2,179,578	-				-1.7
2,179,610	+				-3.5
2,179,611	-				-3.6
2,179,622	+				-1.9
2,179,622	+				-2.2
2,179,623	-				-1.3
2,179,625	+				-4.1
2,179,625	+				-1.6
2,179,625	+				-4.1
2,179,626	-				-0.3
2,179,626	-				-1.3
2,179,626	-				-2.0
2,179,631	+				-0.5
2,179,631	+				-2.5
2,179,631	+				-2.6
2,179,631	+				-0.9
2,179,631	+				-2.4
2,179,632	-				-1.9
2,179,632	-				-0.4
2,179,651	-				-1.1
2,179,680	+				-3.2
2,179,680	+				-2.1
2,179,681	-				-0.1
2,179,681	-				-0.7
2,179,681	-				-0.2
2,179,704	+				-1.7
2,179,704	+				-0.9
2,179,705	-				+1.7
2,179,717	-				+0.5
2,179,786	+		DDA3937_RS09660	0.12	-3.4
2,179,787	-		DDA3937_RS09660	0.13	-0.6
2,179,867	+		DDA3937_RS09660	0.22	-1.8
2,179,874	-		DDA3937_RS09660	0.23	-0.2
2,179,978	+		DDA3937_RS09660	0.35	-2.7
2,179,978	+		DDA3937_RS09660	0.35	-2.3
2,179,989	+		DDA3937_RS09660	0.36	-1.1
2,179,990	-		DDA3937_RS09660	0.36	-1.3
2,180,030	+		DDA3937_RS09660	0.41	+0.7
2,180,059	+		DDA3937_RS09660	0.44	-1.1
2,180,059	+		DDA3937_RS09660	0.44	-1.3
2,180,059	+		DDA3937_RS09660	0.44	-0.9
2,180,060	-		DDA3937_RS09660	0.44	-0.4
2,180,060	-		DDA3937_RS09660	0.44	+0.3
2,180,060	-		DDA3937_RS09660	0.44	-0.3
2,180,060	-		DDA3937_RS09660	0.44	-1.1
2,180,060	-		DDA3937_RS09660	0.44	-1.2
2,180,090	+		DDA3937_RS09660	0.48	-1.5
2,180,090	+		DDA3937_RS09660	0.48	-1.5
2,180,091	-		DDA3937_RS09660	0.48	-1.0
2,180,124	+		DDA3937_RS09660	0.52	-1.7
2,180,124	+		DDA3937_RS09660	0.52	-2.5
2,180,124	+		DDA3937_RS09660	0.52	-1.3
2,180,124	+		DDA3937_RS09660	0.52	-2.1
2,180,124	+		DDA3937_RS09660	0.52	-0.3
2,180,124	+		DDA3937_RS09660	0.52	-2.8
2,180,124	+		DDA3937_RS09660	0.52	-1.6
2,180,125	-		DDA3937_RS09660	0.52	+0.6
2,180,125	-		DDA3937_RS09660	0.52	-0.2
2,180,125	-		DDA3937_RS09660	0.52	-0.9
2,180,125	-		DDA3937_RS09660	0.52	+0.7
2,180,125	-		DDA3937_RS09660	0.52	+0.7
2,180,125	-		DDA3937_RS09660	0.52	+0.3
2,180,125	-		DDA3937_RS09660	0.52	-2.5
2,180,125	-		DDA3937_RS09660	0.52	-0.5
2,180,184	+		DDA3937_RS09660	0.59	-1.7
2,180,201	+		DDA3937_RS09660	0.61	-1.0
2,180,201	+		DDA3937_RS09660	0.61	-3.0
2,180,221	+		DDA3937_RS09660	0.63	-0.2
2,180,222	-		DDA3937_RS09660	0.63	-1.3
2,180,267	-		DDA3937_RS09660	0.69	-2.3
2,180,327	+		DDA3937_RS09660	0.76	-1.5
2,180,341	+		DDA3937_RS09660	0.77	-0.2
2,180,342	-		DDA3937_RS09660	0.77	-0.6
2,180,342	-		DDA3937_RS09660	0.77	-1.3
2,180,347	-		DDA3937_RS09660	0.78	-0.1
2,180,368	+		DDA3937_RS09660	0.80	-2.1
2,180,383	-		DDA3937_RS09660	0.82	-0.9
2,180,397	-		DDA3937_RS09660	0.84	-1.3
2,180,441	-		DDA3937_RS09660	0.89	-0.3
2,180,464	-				+0.1
2,180,464	-				-1.1
2,180,507	+				-1.1
2,180,508	-				-2.2
2,180,508	-				-0.3
2,180,510	+				-0.9
2,180,539	+				-2.8
2,180,550	+				-1.2
2,180,571	+				-1.1
2,180,574	+				-0.3
2,180,574	+				-1.7
2,180,625	-				+0.4
2,180,745	+				+0.5
2,180,756	-				-1.2
2,180,779	+				-0.9
2,180,782	-				+0.7
2,180,817	-				-1.0
2,180,838	+				-0.5
2,180,846	+				-1.1
2,180,847	-				-0.1
2,180,849	-				-1.2
2,180,850	+				-0.6
2,180,853	+				-0.1
2,180,868	+				-2.5
2,180,878	+				-0.3
2,180,908	+				-2.3
2,180,927	+				-0.5
2,180,933	+				-0.8
2,180,933	+				-0.9
2,180,953	+				-0.5
2,181,017	+				+0.7
2,181,030	+				-0.9
2,181,031	-				-1.3
2,181,035	+				+0.4
2,181,036	-				-0.9
2,181,036	-				-0.2
2,181,076	-				-1.2
2,181,141	+				-0.6
2,181,198	+				-0.2
2,181,198	+				-0.3
2,181,199	-				-2.2
2,181,206	+		DDA3937_RS09665	0.10	-0.9
2,181,207	-		DDA3937_RS09665	0.10	+0.3
2,181,219	+		DDA3937_RS09665	0.11	+0.3
2,181,219	+		DDA3937_RS09665	0.11	-1.5
2,181,219	+		DDA3937_RS09665	0.11	+0.1
2,181,219	+		DDA3937_RS09665	0.11	+0.9
2,181,220	-		DDA3937_RS09665	0.11	-2.1
2,181,220	-		DDA3937_RS09665	0.11	+0.6
2,181,220	-		DDA3937_RS09665	0.11	-0.7
2,181,220	-		DDA3937_RS09665	0.11	-0.1
2,181,220	-		DDA3937_RS09665	0.11	-1.1
2,181,222	+		DDA3937_RS09665	0.11	-1.0
2,181,285	+		DDA3937_RS09665	0.15	-1.0
2,181,286	-		DDA3937_RS09665	0.15	+0.0
2,181,446	+		DDA3937_RS09665	0.24	-0.0
2,181,446	+		DDA3937_RS09665	0.24	-0.8
2,181,447	-		DDA3937_RS09665	0.24	-0.2
2,181,514	-		DDA3937_RS09665	0.27	-2.1