Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09655

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,176,386	-		DDA3937_RS09650	0.12	-0.9
2,176,471	-		DDA3937_RS09650	0.24	-0.7
2,176,532	+		DDA3937_RS09650	0.32	-2.5
2,176,555	-		DDA3937_RS09650	0.35	-3.1
2,176,555	-		DDA3937_RS09650	0.35	-2.5
2,176,587	+		DDA3937_RS09650	0.40	-1.5
2,176,596	+		DDA3937_RS09650	0.41	-0.3
2,176,596	+		DDA3937_RS09650	0.41	-1.3
2,176,596	+		DDA3937_RS09650	0.41	-2.0
2,176,596	+		DDA3937_RS09650	0.41	-1.3
2,176,596	+		DDA3937_RS09650	0.41	-2.1
2,176,596	+		DDA3937_RS09650	0.41	-1.3
2,176,597	-		DDA3937_RS09650	0.41	-2.6
2,176,597	-		DDA3937_RS09650	0.41	-0.9
2,176,597	-		DDA3937_RS09650	0.41	-2.2
2,176,597	-		DDA3937_RS09650	0.41	-2.9
2,176,601	-		DDA3937_RS09650	0.41	+0.1
2,176,642	-		DDA3937_RS09650	0.47	-1.9
2,176,731	+		DDA3937_RS09650	0.59	-1.8
2,176,731	+		DDA3937_RS09650	0.59	-1.3
2,176,732	-		DDA3937_RS09650	0.59	-2.6
2,176,732	-		DDA3937_RS09650	0.59	-2.1
2,176,734	+		DDA3937_RS09650	0.59	-1.9
2,176,735	-		DDA3937_RS09650	0.60	-2.6
2,176,737	+		DDA3937_RS09650	0.60	-2.8
2,176,737	+		DDA3937_RS09650	0.60	-1.1
2,176,737	+		DDA3937_RS09650	0.60	-0.3
2,176,737	+		DDA3937_RS09650	0.60	-2.9
2,176,738	-		DDA3937_RS09650	0.60	-1.9
2,176,738	-		DDA3937_RS09650	0.60	-3.8
2,176,738	-		DDA3937_RS09650	0.60	-1.7
2,176,738	-		DDA3937_RS09650	0.60	-1.3
2,176,836	+		DDA3937_RS09650	0.73	-1.9
2,176,847	+		DDA3937_RS09650	0.75	-2.2
2,176,847	+		DDA3937_RS09650	0.75	-1.5
2,176,848	-		DDA3937_RS09650	0.75	-2.3
2,176,848	-		DDA3937_RS09650	0.75	-2.5
2,176,877	-		DDA3937_RS09650	0.79	-2.9
2,176,877	-		DDA3937_RS09650	0.79	-1.9
2,176,902	+				-1.9
2,176,928	+				+0.7
2,176,987	+				-3.3
2,176,988	-				-2.0
2,176,988	-				-3.1
2,177,025	+				+1.7
2,177,026	-				-3.6
2,177,064	+				-3.0
2,177,124	-				-0.3
2,177,283	-				+0.5
2,177,310	+				-0.7
2,177,311	-				-0.9
2,177,337	+				-1.1
2,177,337	+				-1.5
2,177,337	+				-1.1
2,177,337	+				-0.1
2,177,337	+				-1.0
2,177,337	+				-1.0
2,177,338	-				-0.9
2,177,338	-				-2.0
2,177,338	-				-2.0
2,177,338	-				-1.2
2,177,338	-				-1.0
2,177,338	-				-1.3
2,177,338	-				-1.3
2,177,338	-				-0.9
2,177,338	-				-0.9
2,177,338	-				-1.2
2,177,338	-				-1.6
2,177,341	+				-0.3
2,177,341	+				+0.7
2,177,342	-				-2.3
2,177,342	-				-0.6
2,177,342	-				-1.1
2,177,342	-				-0.7
2,177,361	-				-0.3
2,177,447	-				-1.9
2,177,545	+				-2.4
2,177,545	+				-1.0
2,177,546	-				-1.9
2,177,546	-				-0.9
2,177,546	-				+0.2
2,177,546	-				-2.1
2,177,546	-				-2.0
2,177,576	+		DDA3937_RS09655	0.10	-2.8
2,177,576	+		DDA3937_RS09655	0.10	-3.3
2,177,576	+		DDA3937_RS09655	0.10	-2.4
2,177,595	-		DDA3937_RS09655	0.11	-1.3
2,177,626	+		DDA3937_RS09655	0.13	-0.3
2,177,627	-		DDA3937_RS09655	0.13	-1.3
2,177,633	+		DDA3937_RS09655	0.13	-1.6
2,177,633	+		DDA3937_RS09655	0.13	+0.1
2,177,634	-		DDA3937_RS09655	0.13	-0.7
2,177,634	-		DDA3937_RS09655	0.13	-0.9
2,177,765	+		DDA3937_RS09655	0.19	-2.8
2,177,766	-		DDA3937_RS09655	0.19	+1.7
2,177,785	+		DDA3937_RS09655	0.19	-0.3
2,177,785	+		DDA3937_RS09655	0.19	-2.5
2,177,785	+		DDA3937_RS09655	0.19	-3.6
2,177,785	+		DDA3937_RS09655	0.19	+0.1
2,177,785	+		DDA3937_RS09655	0.19	-2.1
2,177,785	+		DDA3937_RS09655	0.19	-1.6
2,177,785	+		DDA3937_RS09655	0.19	-3.4
2,177,786	-		DDA3937_RS09655	0.20	-2.5
2,177,787	+		DDA3937_RS09655	0.20	-2.4
2,177,787	+		DDA3937_RS09655	0.20	-1.3
2,177,788	-		DDA3937_RS09655	0.20	+1.1
2,177,828	+		DDA3937_RS09655	0.21	-1.5
2,177,828	+		DDA3937_RS09655	0.21	-1.8
2,177,828	+		DDA3937_RS09655	0.21	+0.0
2,177,839	+		DDA3937_RS09655	0.22	+0.7
2,177,839	+		DDA3937_RS09655	0.22	-0.3
2,177,839	+		DDA3937_RS09655	0.22	-0.3
2,177,840	-		DDA3937_RS09655	0.22	-2.5
2,177,843	+		DDA3937_RS09655	0.22	-0.9
2,177,844	-				-1.3
2,177,999	-				-0.9
2,177,999	-		DDA3937_RS09655	0.29	-1.6
2,178,103	+		DDA3937_RS09655	0.33	-1.4
2,178,103	+		DDA3937_RS09655	0.33	-0.8
2,178,103	+		DDA3937_RS09655	0.33	-1.3
2,178,103	+		DDA3937_RS09655	0.33	+1.5
2,178,104	-		DDA3937_RS09655	0.33	-0.8
2,178,104	-		DDA3937_RS09655	0.33	-3.1
2,178,104	-		DDA3937_RS09655	0.33	-2.4
2,178,104	-				-0.9
2,178,109	+		DDA3937_RS09655	0.34	-2.3
2,178,109	+		DDA3937_RS09655	0.34	+1.9
2,178,109	+		DDA3937_RS09655	0.34	-2.3
2,178,109	+		DDA3937_RS09655	0.34	-2.6
2,178,110	-		DDA3937_RS09655	0.34	-1.5
2,178,110	-		DDA3937_RS09655	0.34	-2.9
2,178,110	-		DDA3937_RS09655	0.34	-0.3
2,178,110	-		DDA3937_RS09655	0.34	-2.8
2,178,110	-		DDA3937_RS09655	0.34	-1.9
2,178,110	-		DDA3937_RS09655	0.34	-2.5
2,178,110	-		DDA3937_RS09655	0.34	-3.4
2,178,124	+		DDA3937_RS09655	0.34	-3.2
2,178,124	+		DDA3937_RS09655	0.34	-1.4
2,178,125	-		DDA3937_RS09655	0.34	-2.0
2,178,125	-		DDA3937_RS09655	0.34	-3.4
2,178,125	-		DDA3937_RS09655	0.34	-3.1
2,178,125	-		DDA3937_RS09655	0.34	-2.5
2,178,125	-				+0.1
2,178,151	+		DDA3937_RS09655	0.36	-2.2
2,178,152	-		DDA3937_RS09655	0.36	-1.4
2,178,152	-		DDA3937_RS09655	0.36	-1.7
2,178,158	+		DDA3937_RS09655	0.36	-2.3
2,178,158	+		DDA3937_RS09655	0.36	-2.5
2,178,186	-		DDA3937_RS09655	0.37	-1.6
2,178,289	+		DDA3937_RS09655	0.42	-1.1
2,178,289	+		DDA3937_RS09655	0.42	-2.2
2,178,289	+		DDA3937_RS09655	0.42	-3.5
2,178,290	-		DDA3937_RS09655	0.42	-1.3
2,178,290	-		DDA3937_RS09655	0.42	-1.3
2,178,349	-		DDA3937_RS09655	0.44	-0.9
2,178,349	-		DDA3937_RS09655	0.44	-0.9
2,178,424	+		DDA3937_RS09655	0.47	-0.9
2,178,425	-		DDA3937_RS09655	0.48	-2.8
2,178,653	-		DDA3937_RS09655	0.58	-3.0
2,178,653	-		DDA3937_RS09655	0.58	-2.6
2,178,662	+		DDA3937_RS09655	0.58	+0.0
2,178,680	+		DDA3937_RS09655	0.59	-2.3
2,178,681	-		DDA3937_RS09655	0.59	-1.3
2,178,768	-		DDA3937_RS09655	0.63	-0.9
2,178,835	+		DDA3937_RS09655	0.65	-0.3
2,178,836	-		DDA3937_RS09655	0.66	+0.0
2,178,844	+		DDA3937_RS09655	0.66	-0.8
2,178,844	+		DDA3937_RS09655	0.66	-2.1
2,178,844	+		DDA3937_RS09655	0.66	-1.7
2,178,845	-		DDA3937_RS09655	0.66	-0.3
2,178,845	-		DDA3937_RS09655	0.66	-0.2
2,178,845	-		DDA3937_RS09655	0.66	-2.7
2,178,873	-		DDA3937_RS09655	0.67	-1.8
2,178,901	+		DDA3937_RS09655	0.68	-3.2
2,179,049	-		DDA3937_RS09655	0.75	-2.8
2,179,060	+		DDA3937_RS09655	0.75	-2.3
2,179,060	+		DDA3937_RS09655	0.75	-1.6
2,179,061	-		DDA3937_RS09655	0.75	-1.8
2,179,061	-		DDA3937_RS09655	0.75	-1.2
2,179,061	-		DDA3937_RS09655	0.75	-2.1
2,179,061	-		DDA3937_RS09655	0.75	-2.1
2,179,091	+		DDA3937_RS09655	0.77	-1.9
2,179,105	+		DDA3937_RS09655	0.77	-1.4
2,179,105	+		DDA3937_RS09655	0.77	-0.3
2,179,163	+		DDA3937_RS09655	0.80	-1.0
2,179,163	+		DDA3937_RS09655	0.80	-0.1
2,179,164	-		DDA3937_RS09655	0.80	+0.1
2,179,164	-		DDA3937_RS09655	0.80	-0.8
2,179,165	+		DDA3937_RS09655	0.80	-1.3
2,179,166	-		DDA3937_RS09655	0.80	-1.8
2,179,177	-		DDA3937_RS09655	0.80	-1.9
2,179,196	+		DDA3937_RS09655	0.81	-1.8
2,179,197	-		DDA3937_RS09655	0.81	-1.5
2,179,201	+		DDA3937_RS09655	0.82	-2.3
2,179,246	+		DDA3937_RS09655	0.83	-3.1
2,179,247	-		DDA3937_RS09655	0.84	-0.8
2,179,254	-		DDA3937_RS09655	0.84	+0.1
2,179,355	+		DDA3937_RS09655	0.88	-2.8
2,179,355	+		DDA3937_RS09655	0.88	-3.3
2,179,355	+		DDA3937_RS09655	0.88	-1.2
2,179,355	+		DDA3937_RS09655	0.88	-2.0
2,179,355	+		DDA3937_RS09655	0.88	-2.3
2,179,356	-		DDA3937_RS09655	0.88	-2.8
2,179,356	-		DDA3937_RS09655	0.88	-2.4
2,179,357	+		DDA3937_RS09655	0.88	-1.2
2,179,358	-		DDA3937_RS09655	0.88	-2.1
2,179,358	-		DDA3937_RS09655	0.88	-3.1
2,179,376	+		DDA3937_RS09655	0.89	-2.8
2,179,376	+		DDA3937_RS09655	0.89	-1.2
2,179,376	+		DDA3937_RS09655	0.89	-2.5
2,179,377	-		DDA3937_RS09655	0.89	-0.3
2,179,377	-		DDA3937_RS09655	0.89	-2.2
2,179,389	+		DDA3937_RS09655	0.90	-1.2
2,179,390	-		DDA3937_RS09655	0.90	-2.8
2,179,390	-		DDA3937_RS09655	0.90	-1.1
2,179,467	-				-2.6
2,179,467	-				-0.9
2,179,522	+				-0.3
2,179,522	+				-2.0
2,179,523	-				-1.4
2,179,545	+				-1.6
2,179,545	+				-1.1
2,179,545	+				-2.9
2,179,545	+				-2.3
2,179,546	-				-0.3
2,179,546	-				-3.5
2,179,546	-				-1.8
2,179,577	+				-2.0
2,179,578	-				-0.5
2,179,578	-				+0.1
2,179,578	-				-1.7
2,179,610	+				-3.5
2,179,611	-				-3.6
2,179,622	+				-1.9
2,179,622	+				-2.2
2,179,623	-				-1.3
2,179,625	+				-4.1
2,179,625	+				-1.6
2,179,625	+				-4.1
2,179,626	-				-0.3
2,179,626	-				-1.3
2,179,626	-				-2.0
2,179,631	+				-0.5
2,179,631	+				-2.5
2,179,631	+				-2.6
2,179,631	+				-0.9
2,179,631	+				-2.4
2,179,632	-				-1.9
2,179,632	-				-0.4
2,179,651	-				-1.1
2,179,680	+				-3.2
2,179,680	+				-2.1
2,179,681	-				-0.1
2,179,681	-				-0.7
2,179,681	-				-0.2
2,179,704	+				-1.7
2,179,704	+				-0.9
2,179,705	-				+1.7
2,179,717	-				+0.5
2,179,786	+		DDA3937_RS09660	0.12	-3.4
2,179,787	-		DDA3937_RS09660	0.13	-0.6
2,179,867	+		DDA3937_RS09660	0.22	-1.8
2,179,874	-		DDA3937_RS09660	0.23	-0.2
2,179,978	+		DDA3937_RS09660	0.35	-2.7
2,179,978	+		DDA3937_RS09660	0.35	-2.3
2,179,989	+		DDA3937_RS09660	0.36	-1.1
2,179,990	-		DDA3937_RS09660	0.36	-1.3
2,180,030	+		DDA3937_RS09660	0.41	+0.7
2,180,059	+		DDA3937_RS09660	0.44	-1.1
2,180,059	+		DDA3937_RS09660	0.44	-1.3
2,180,059	+		DDA3937_RS09660	0.44	-0.9
2,180,060	-		DDA3937_RS09660	0.44	-0.4
2,180,060	-		DDA3937_RS09660	0.44	+0.3
2,180,060	-		DDA3937_RS09660	0.44	-0.3
2,180,060	-		DDA3937_RS09660	0.44	-1.1
2,180,060	-		DDA3937_RS09660	0.44	-1.2
2,180,090	+		DDA3937_RS09660	0.48	-1.5
2,180,090	+		DDA3937_RS09660	0.48	-1.5
2,180,091	-		DDA3937_RS09660	0.48	-1.0
2,180,124	+		DDA3937_RS09660	0.52	-1.7
2,180,124	+		DDA3937_RS09660	0.52	-2.5
2,180,124	+		DDA3937_RS09660	0.52	-1.3
2,180,124	+		DDA3937_RS09660	0.52	-2.1
2,180,124	+		DDA3937_RS09660	0.52	-0.3
2,180,124	+		DDA3937_RS09660	0.52	-2.8
2,180,124	+		DDA3937_RS09660	0.52	-1.6
2,180,125	-		DDA3937_RS09660	0.52	+0.6
2,180,125	-		DDA3937_RS09660	0.52	-0.2
2,180,125	-		DDA3937_RS09660	0.52	-0.9
2,180,125	-		DDA3937_RS09660	0.52	+0.7
2,180,125	-		DDA3937_RS09660	0.52	+0.7
2,180,125	-		DDA3937_RS09660	0.52	+0.3
2,180,125	-		DDA3937_RS09660	0.52	-2.5
2,180,125	-		DDA3937_RS09660	0.52	-0.5
2,180,184	+		DDA3937_RS09660	0.59	-1.7
2,180,201	+		DDA3937_RS09660	0.61	-1.0
2,180,201	+		DDA3937_RS09660	0.61	-3.0
2,180,221	+		DDA3937_RS09660	0.63	-0.2
2,180,222	-		DDA3937_RS09660	0.63	-1.3
2,180,267	-		DDA3937_RS09660	0.69	-2.3
2,180,327	+		DDA3937_RS09660	0.76	-1.5
2,180,341	+		DDA3937_RS09660	0.77	-0.2
2,180,342	-		DDA3937_RS09660	0.77	-0.6
2,180,342	-		DDA3937_RS09660	0.77	-1.3
2,180,347	-		DDA3937_RS09660	0.78	-0.1
2,180,368	+		DDA3937_RS09660	0.80	-2.1
2,180,383	-		DDA3937_RS09660	0.82	-0.9
2,180,397	-		DDA3937_RS09660	0.84	-1.3
2,180,441	-		DDA3937_RS09660	0.89	-0.3
2,180,464	-				+0.1
2,180,464	-				-1.1
2,180,507	+				-1.1
2,180,508	-				-2.2
2,180,508	-				-0.3
2,180,510	+				-0.9
2,180,539	+				-2.8
2,180,550	+				-1.2
2,180,571	+				-1.1
2,180,574	+				-0.3
2,180,574	+				-1.7