Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09540

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,146,725	+				-1.0
2,146,853	+		DDA3937_RS09535	0.23	-0.1
2,146,853	+		DDA3937_RS09535	0.23	-1.9
2,146,858	+		DDA3937_RS09535	0.23	+0.5
2,146,858	+				+1.0
2,146,859	-		DDA3937_RS09535	0.23	-0.4
2,146,859	-		DDA3937_RS09535	0.23	-0.5
2,146,859	-		DDA3937_RS09535	0.23	-0.3
2,146,936	+				+0.3
2,146,987	+		DDA3937_RS09535	0.36	-1.0
2,146,987	+		DDA3937_RS09535	0.36	+0.3
2,146,987	+		DDA3937_RS09535	0.36	-0.7
2,146,988	-		DDA3937_RS09535	0.36	+1.3
2,146,988	-		DDA3937_RS09535	0.36	-0.1
2,146,988	-		DDA3937_RS09535	0.36	-0.2
2,146,988	-		DDA3937_RS09535	0.36	+0.0
2,146,988	-		DDA3937_RS09535	0.36	-1.6
2,146,988	-		DDA3937_RS09535	0.36	-1.3
2,146,988	-		DDA3937_RS09535	0.36	+0.1
2,146,989	+		DDA3937_RS09535	0.36	+0.4
2,146,989	+		DDA3937_RS09535	0.36	+1.7
2,146,989	+		DDA3937_RS09535	0.36	+0.6
2,146,989	+		DDA3937_RS09535	0.36	+0.0
2,146,989	+		DDA3937_RS09535	0.36	+0.5
2,146,989	+		DDA3937_RS09535	0.36	-1.0
2,146,990	-		DDA3937_RS09535	0.36	-1.2
2,146,990	-		DDA3937_RS09535	0.36	+1.1
2,146,990	-		DDA3937_RS09535	0.36	-1.2
2,146,990	-		DDA3937_RS09535	0.36	-0.6
2,146,990	-		DDA3937_RS09535	0.36	-0.9
2,146,990	-		DDA3937_RS09535	0.36	-0.5
2,146,990	-		DDA3937_RS09535	0.36	+0.3
2,146,990	-		DDA3937_RS09535	0.36	+2.2
2,147,120	+		DDA3937_RS09535	0.49	-0.9
2,147,120	+		DDA3937_RS09535	0.49	-1.0
2,147,121	-		DDA3937_RS09535	0.49	+1.6
2,147,121	-		DDA3937_RS09535	0.49	-1.8
2,147,121	-		DDA3937_RS09535	0.49	-1.0
2,147,293	-		DDA3937_RS09535	0.66	+0.7
2,147,293	-		DDA3937_RS09535	0.66	-0.2
2,147,353	-		DDA3937_RS09535	0.72	-1.2
2,147,414	+		DDA3937_RS09535	0.78	-0.3
2,147,415	-		DDA3937_RS09535	0.78	+0.1
2,147,461	+		DDA3937_RS09535	0.83	-1.3
2,147,461	+		DDA3937_RS09535	0.83	-0.3
2,147,461	+		DDA3937_RS09535	0.83	+0.1
2,147,461	+		DDA3937_RS09535	0.83	-1.2
2,147,461	+		DDA3937_RS09535	0.83	-0.1
2,147,462	-		DDA3937_RS09535	0.83	-0.5
2,147,462	-		DDA3937_RS09535	0.83	-0.7
2,147,462	-		DDA3937_RS09535	0.83	-1.6
2,147,462	-		DDA3937_RS09535	0.83	+0.7
2,147,463	+		DDA3937_RS09535	0.83	-0.2
2,147,464	-		DDA3937_RS09535	0.83	-0.6
2,147,464	-		DDA3937_RS09535	0.83	-0.6
2,147,464	-		DDA3937_RS09535	0.83	+1.1
2,147,529	+				+0.1
2,147,529	+		DDA3937_RS09535	0.90	+0.4
2,147,561	+				+0.0
2,147,561	+				-0.3
2,147,561	+				-0.3
2,147,561	+				-1.4
2,147,561	+				+2.0
2,147,561	+				+0.4
2,147,561	+				-0.5
2,147,562	-				-0.0
2,147,562	-				+0.0
2,147,562	-				-0.7
2,147,562	-				+0.4
2,147,620	+				-0.4
2,147,645	-				-0.6
2,147,645	-				-0.3
2,147,660	+				-0.5
2,147,712	+				-0.4
2,147,712	+				+0.5
2,147,712	+				-1.1
2,147,713	-				+0.1
2,147,713	-				-0.6
2,147,811	+				-1.3
2,147,812	-				-0.5
2,147,812	-				-0.3
2,147,813	+				-0.6
2,147,814	-				-1.1
2,147,814	-				+0.6
2,147,814	-				-0.1
2,148,027	+		DDA3937_RS09540	0.20	-0.1
2,148,028	-		DDA3937_RS09540	0.20	-0.2
2,148,028	-		DDA3937_RS09540	0.20	-0.3
2,148,039	-		DDA3937_RS09540	0.21	-1.9
2,148,039	-		DDA3937_RS09540	0.21	-0.5
2,148,042	+		DDA3937_RS09540	0.21	+2.0
2,148,043	-		DDA3937_RS09540	0.21	-0.6
2,148,079	+		DDA3937_RS09540	0.23	+0.2
2,148,091	-		DDA3937_RS09540	0.24	-0.8
2,148,102	-		DDA3937_RS09540	0.25	-0.9
2,148,104	+		DDA3937_RS09540	0.25	-0.4
2,148,104	+		DDA3937_RS09540	0.25	-0.2
2,148,105	-		DDA3937_RS09540	0.25	-2.1
2,148,105	-		DDA3937_RS09540	0.25	-0.4
2,148,232	-		DDA3937_RS09540	0.33	+0.1
2,148,254	+		DDA3937_RS09540	0.34	-1.5
2,148,254	+		DDA3937_RS09540	0.34	-0.6
2,148,255	-		DDA3937_RS09540	0.34	-0.9
2,148,358	-		DDA3937_RS09540	0.40	+1.0
2,148,359	-		DDA3937_RS09540	0.40	-0.1
2,148,368	+		DDA3937_RS09540	0.41	-0.5
2,148,369	-		DDA3937_RS09540	0.41	+0.2
2,148,467	+				+0.4
2,148,467	+		DDA3937_RS09540	0.47	-0.3
2,148,468	-		DDA3937_RS09540	0.47	-1.1
2,148,539	+		DDA3937_RS09540	0.51	-2.2
2,148,539	+		DDA3937_RS09540	0.51	+0.7
2,148,539	+		DDA3937_RS09540	0.51	-0.5
2,148,539	+		DDA3937_RS09540	0.51	+1.2
2,148,539	+		DDA3937_RS09540	0.51	-0.4
2,148,539	+		DDA3937_RS09540	0.51	+0.2
2,148,540	-		DDA3937_RS09540	0.51	-0.3
2,148,540	-		DDA3937_RS09540	0.51	-0.4
2,148,540	-		DDA3937_RS09540	0.51	-1.6
2,148,540	-		DDA3937_RS09540	0.51	-0.3
2,148,543	+		DDA3937_RS09540	0.51	-0.1
2,148,543	+		DDA3937_RS09540	0.51	-0.9
2,148,543	+		DDA3937_RS09540	0.51	-0.5
2,148,543	+		DDA3937_RS09540	0.51	-1.8
2,148,543	+		DDA3937_RS09540	0.51	-0.5
2,148,543	+		DDA3937_RS09540	0.51	-1.3
2,148,544	-		DDA3937_RS09540	0.52	+1.2
2,148,579	+		DDA3937_RS09540	0.54	-0.9
2,148,579	+		DDA3937_RS09540	0.54	-0.9
2,148,580	-		DDA3937_RS09540	0.54	-2.3
2,148,580	-		DDA3937_RS09540	0.54	+1.6
2,148,580	-		DDA3937_RS09540	0.54	-0.1
2,148,580	-		DDA3937_RS09540	0.54	+0.0
2,148,580	-		DDA3937_RS09540	0.54	-1.2
2,148,637	+		DDA3937_RS09540	0.57	-1.0
2,148,637	+		DDA3937_RS09540	0.57	+1.3
2,148,638	-		DDA3937_RS09540	0.57	-0.9
2,148,806	+		DDA3937_RS09540	0.67	-1.1
2,148,806	+		DDA3937_RS09540	0.67	-0.9
2,148,807	-		DDA3937_RS09540	0.67	-2.0
2,148,807	-		DDA3937_RS09540	0.67	-0.3
2,148,807	-		DDA3937_RS09540	0.67	+0.4
2,148,807	-		DDA3937_RS09540	0.67	-0.2
2,148,807	-		DDA3937_RS09540	0.67	+1.1
2,148,807	-		DDA3937_RS09540	0.67	+0.5
2,148,808	+		DDA3937_RS09540	0.68	-0.3
2,148,808	+		DDA3937_RS09540	0.68	-1.3
2,148,808	+		DDA3937_RS09540	0.68	+0.5
2,148,808	+		DDA3937_RS09540	0.68	-0.2
2,148,808	+		DDA3937_RS09540	0.68	-0.5
2,148,808	+		DDA3937_RS09540	0.68	-1.3
2,148,808	+				+1.2
2,148,808	+		DDA3937_RS09540	0.68	-0.2
2,148,808	+		DDA3937_RS09540	0.68	-0.8
2,148,808	+		DDA3937_RS09540	0.68	-0.9
2,148,808	+		DDA3937_RS09540	0.68	+0.5
2,148,809	-		DDA3937_RS09540	0.68	-0.1
2,148,809	-		DDA3937_RS09540	0.68	-1.0
2,148,809	-		DDA3937_RS09540	0.68	-0.1
2,148,809	-		DDA3937_RS09540	0.68	+1.9
2,148,809	-		DDA3937_RS09540	0.68	-1.9
2,148,809	-		DDA3937_RS09540	0.68	-0.9
2,148,809	-		DDA3937_RS09540	0.68	-1.8
2,148,809	-		DDA3937_RS09540	0.68	+1.7
2,148,809	-		DDA3937_RS09540	0.68	-1.0
2,148,809	-		DDA3937_RS09540	0.68	-2.1
2,148,849	+		DDA3937_RS09540	0.70	-0.4
2,148,849	+		DDA3937_RS09540	0.70	-1.1
2,148,850	-		DDA3937_RS09540	0.70	-1.0
2,148,851	+		DDA3937_RS09540	0.70	-0.6
2,148,851	+		DDA3937_RS09540	0.70	-2.0
2,148,851	+		DDA3937_RS09540	0.70	-0.3
2,148,851	+		DDA3937_RS09540	0.70	+0.1
2,148,851	+		DDA3937_RS09540	0.70	-2.3
2,148,851	+		DDA3937_RS09540	0.70	-0.8
2,148,852	-		DDA3937_RS09540	0.70	+0.7
2,148,852	-		DDA3937_RS09540	0.70	+0.4
2,148,852	-		DDA3937_RS09540	0.70	+1.4
2,148,852	-		DDA3937_RS09540	0.70	-0.0
2,148,852	-		DDA3937_RS09540	0.70	+0.9
2,148,852	-		DDA3937_RS09540	0.70	-2.8
2,148,852	-		DDA3937_RS09540	0.70	+0.8
2,148,852	-		DDA3937_RS09540	0.70	-0.5
2,148,852	-		DDA3937_RS09540	0.70	-1.1
2,148,852	-		DDA3937_RS09540	0.70	-1.2
2,148,875	+		DDA3937_RS09540	0.72	-1.6
2,148,875	+		DDA3937_RS09540	0.72	+0.9
2,148,875	+		DDA3937_RS09540	0.72	-1.1
2,148,875	+		DDA3937_RS09540	0.72	-0.9
2,148,903	+		DDA3937_RS09540	0.73	-0.6
2,149,095	+		DDA3937_RS09540	0.85	+1.3
2,149,222	+				-0.9
2,149,223	-				+0.9
2,149,340	+				-0.6
2,149,340	+				-0.4
2,149,341	-				-0.3
2,149,341	-				-0.4
2,149,344	+				+0.7
2,149,344	+				+0.7
2,149,344	+				-0.2
2,149,344	+				-0.6
2,149,344	+				+0.3
2,149,344	+				-0.2
2,149,345	-				+0.3
2,149,345	-				-0.3
2,149,345	-				+1.3
2,149,345	-				+2.6
2,149,345	-				-0.0
2,149,345	-				+0.4
2,149,345	-				-1.6
2,149,345	-				-1.5
2,149,393	+				-1.2
2,149,394	-				-0.3
2,149,394	-				-0.0
2,149,394	-				+0.2
2,149,394	-				+1.4
2,149,425	+				-0.7
2,149,425	+				+0.4
2,149,425	+				-1.1
2,149,426	-				+0.3
2,149,427	+				-2.1
2,149,599	+				+0.6
2,149,599	+				-0.9
2,149,599	+				+0.8
2,149,599	+				+0.2
2,149,599	+				-0.1
2,149,599	+				-0.6
2,149,600	-				+0.3
2,149,635	-				+0.9
2,149,698	-				-0.5
2,149,752	+				-0.2
2,149,752	+				-1.0
2,149,753	-				-0.3
2,149,753	-				-0.4
2,149,753	-				+0.0
2,149,753	-				-0.2
2,149,781	+		DDA3937_RS09545	0.11	+0.1
2,149,782	-		DDA3937_RS09545	0.11	-3.0
2,149,782	-		DDA3937_RS09545	0.11	-1.0
2,149,970	+		DDA3937_RS09545	0.23	-0.9
2,149,971	-		DDA3937_RS09545	0.23	-0.0
2,149,971	-		DDA3937_RS09545	0.23	-0.3
2,150,021	+		DDA3937_RS09545	0.26	+1.3
2,150,253	+		DDA3937_RS09545	0.40	-0.4
2,150,342	+		DDA3937_RS09545	0.45	-0.3