Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09130

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,050,465	+		DDA3937_RS09125	0.16	-0.8
2,050,465	+		DDA3937_RS09125	0.16	+0.2
2,050,465	+		DDA3937_RS09125	0.16	+1.0
2,050,465	+		DDA3937_RS09125	0.16	-0.3
2,050,466	-		DDA3937_RS09125	0.16	-0.2
2,050,476	+		DDA3937_RS09125	0.17	-1.6
2,050,506	-		DDA3937_RS09125	0.20	-0.1
2,050,506	-		DDA3937_RS09125	0.20	-2.8
2,050,506	-		DDA3937_RS09125	0.20	+0.1
2,050,506	-				+1.9
2,050,506	-		DDA3937_RS09125	0.20	-0.3
2,050,628	-		DDA3937_RS09125	0.32	-2.1
2,050,633	+		DDA3937_RS09125	0.32	+0.8
2,050,648	+		DDA3937_RS09125	0.34	-1.0
2,050,723	+		DDA3937_RS09125	0.41	-2.7
2,050,723	+		DDA3937_RS09125	0.41	-1.6
2,050,724	-		DDA3937_RS09125	0.41	+0.5
2,050,899	+		DDA3937_RS09125	0.59	+1.2
2,050,927	+		DDA3937_RS09125	0.61	+1.5
2,050,984	+		DDA3937_RS09125	0.67	-0.3
2,050,984	+		DDA3937_RS09125	0.67	-0.2
2,050,984	+		DDA3937_RS09125	0.67	-0.6
2,050,984	+		DDA3937_RS09125	0.67	-1.2
2,050,984	+		DDA3937_RS09125	0.67	-0.1
2,050,984	+		DDA3937_RS09125	0.67	+0.0
2,050,984	+		DDA3937_RS09125	0.67	-1.3
2,050,985	-		DDA3937_RS09125	0.67	-1.4
2,050,985	-		DDA3937_RS09125	0.67	+0.1
2,050,985	-		DDA3937_RS09125	0.67	+0.1
2,050,986	-		DDA3937_RS09125	0.67	-0.3
2,050,990	+		DDA3937_RS09125	0.68	+0.0
2,050,990	+		DDA3937_RS09125	0.68	-0.3
2,050,990	+		DDA3937_RS09125	0.68	-0.8
2,050,991	-		DDA3937_RS09125	0.68	+2.9
2,050,991	-		DDA3937_RS09125	0.68	+0.2
2,050,991	-		DDA3937_RS09125	0.68	-1.1
2,051,101	+		DDA3937_RS09125	0.79	-0.3
2,051,102	-		DDA3937_RS09125	0.79	-0.4
2,051,286	-				-0.5
2,051,423	+				-1.3
2,051,423	+				-0.9
2,051,423	+				+0.4
2,051,424	-				-0.9
2,051,424	-				-0.6
2,051,495	-				-0.3
2,051,517	+				+0.1
2,051,517	+				-0.2
2,051,518	-				-0.0
2,051,518	-				+0.4
2,051,518	-				-0.7
2,051,518	-				-1.3
2,051,518	-				+0.4
2,051,634	+		DDA3937_RS09130	0.10	+0.1
2,051,746	-		DDA3937_RS09130	0.17	-0.2
2,051,787	+		DDA3937_RS09130	0.19	+0.4
2,051,787	+		DDA3937_RS09130	0.19	-0.1
2,051,788	-		DDA3937_RS09130	0.19	+1.7
2,051,788	-		DDA3937_RS09130	0.19	-1.3
2,051,829	+		DDA3937_RS09130	0.22	-0.2
2,052,023	+				+1.1
2,052,023	+		DDA3937_RS09130	0.33	+1.3
2,052,023	+		DDA3937_RS09130	0.33	-0.4
2,052,023	+		DDA3937_RS09130	0.33	-2.3
2,052,023	+		DDA3937_RS09130	0.33	+1.2
2,052,023	+		DDA3937_RS09130	0.33	-0.1
2,052,024	-		DDA3937_RS09130	0.33	-1.1
2,052,024	-		DDA3937_RS09130	0.33	-0.1
2,052,024	-		DDA3937_RS09130	0.33	+1.7
2,052,024	-		DDA3937_RS09130	0.33	-0.6
2,052,024	-		DDA3937_RS09130	0.33	+0.2
2,052,024	-		DDA3937_RS09130	0.33	+0.7
2,052,132	+		DDA3937_RS09130	0.39	-0.6
2,052,148	-		DDA3937_RS09130	0.40	-1.5
2,052,152	+		DDA3937_RS09130	0.41	-1.5
2,052,153	-		DDA3937_RS09130	0.41	-0.1
2,052,159	+		DDA3937_RS09130	0.41	-0.7
2,052,159	+		DDA3937_RS09130	0.41	+0.2
2,052,162	+		DDA3937_RS09130	0.41	-0.1
2,052,162	+		DDA3937_RS09130	0.41	-0.6
2,052,223	+		DDA3937_RS09130	0.45	+1.1
2,052,247	+		DDA3937_RS09130	0.46	-2.5
2,052,248	-		DDA3937_RS09130	0.46	-1.1
2,052,412	+		DDA3937_RS09130	0.56	+0.3
2,052,412	+		DDA3937_RS09130	0.56	+0.1
2,052,413	-		DDA3937_RS09130	0.56	+0.5
2,052,413	-		DDA3937_RS09130	0.56	-0.1
2,052,413	-		DDA3937_RS09130	0.56	-0.4
2,052,413	-		DDA3937_RS09130	0.56	-1.4
2,052,413	-		DDA3937_RS09130	0.56	-1.1
2,052,583	-		DDA3937_RS09130	0.66	-0.0
2,052,583	-		DDA3937_RS09130	0.66	+1.1
2,052,591	+		DDA3937_RS09130	0.66	+0.3
2,052,591	+		DDA3937_RS09130	0.66	-0.8
2,052,603	+		DDA3937_RS09130	0.67	-0.7
2,052,603	+		DDA3937_RS09130	0.67	-0.5
2,052,603	+		DDA3937_RS09130	0.67	+0.1
2,052,603	+		DDA3937_RS09130	0.67	-0.4
2,052,604	-		DDA3937_RS09130	0.67	+1.2
2,052,604	-		DDA3937_RS09130	0.67	+0.2
2,052,737	-		DDA3937_RS09130	0.75	+0.3
2,052,784	+		DDA3937_RS09130	0.78	+1.0
2,052,785	-		DDA3937_RS09130	0.78	-2.6
2,052,876	+		DDA3937_RS09130	0.83	-2.2
2,052,876	+		DDA3937_RS09130	0.83	+0.3
2,052,877	-		DDA3937_RS09130	0.83	+1.0
2,052,877	-		DDA3937_RS09130	0.83	+1.2
2,052,924	+		DDA3937_RS09130	0.86	-2.6
2,052,924	+		DDA3937_RS09130	0.86	-0.9
2,052,924	+		DDA3937_RS09130	0.86	-3.0
2,053,051	+				-1.5
2,053,052	-				+1.1
2,053,052	-				-0.7
2,053,052	-				+0.9
2,053,052	-				+1.7
2,053,052	-				-2.9
2,053,052	-				-0.6
2,053,052	-				-0.7
2,053,126	-				-0.7
2,053,307	+		DDA3937_RS09135	0.16	+1.3
2,053,406	-				-2.1
2,053,433	+		DDA3937_RS09135	0.33	+0.3
2,053,433	+		DDA3937_RS09135	0.33	-0.9
2,053,478	+		DDA3937_RS09135	0.40	-0.8
2,053,478	+		DDA3937_RS09135	0.40	-0.1
2,053,478	+		DDA3937_RS09135	0.40	-1.5
2,053,478	+		DDA3937_RS09135	0.40	+0.3
2,053,479	-		DDA3937_RS09135	0.40	-1.5
2,053,479	-		DDA3937_RS09135	0.40	-0.2
2,053,479	-		DDA3937_RS09135	0.40	+1.3
2,053,479	-		DDA3937_RS09135	0.40	-1.3
2,053,479	-		DDA3937_RS09135	0.40	-2.0
2,053,479	-		DDA3937_RS09135	0.40	-1.2
2,053,480	+		DDA3937_RS09135	0.40	-1.3
2,053,480	+		DDA3937_RS09135	0.40	+1.1
2,053,480	+		DDA3937_RS09135	0.40	-1.3
2,053,481	-		DDA3937_RS09135	0.40	-0.8
2,053,481	-		DDA3937_RS09135	0.40	+0.3
2,053,481	-		DDA3937_RS09135	0.40	+0.0
2,053,494	-		DDA3937_RS09135	0.42	-2.1
2,053,561	+		DDA3937_RS09135	0.51	-0.3
2,053,613	-		DDA3937_RS09135	0.58	-0.4
2,053,618	+		DDA3937_RS09135	0.59	-0.4
2,053,627	+		DDA3937_RS09135	0.60	-1.2
2,053,639	+		DDA3937_RS09135	0.61	+0.4
2,053,648	+		DDA3937_RS09135	0.63	+0.2
2,053,652	+		DDA3937_RS09135	0.63	-0.5
2,053,652	+		DDA3937_RS09135	0.63	-0.9
2,053,652	+		DDA3937_RS09135	0.63	-0.3
2,053,652	+		DDA3937_RS09135	0.63	+1.3
2,053,652	+		DDA3937_RS09135	0.63	-0.1
2,053,653	-		DDA3937_RS09135	0.63	-0.0
2,053,653	-		DDA3937_RS09135	0.63	-0.4
2,053,653	-		DDA3937_RS09135	0.63	+0.4
2,053,653	-		DDA3937_RS09135	0.63	-0.5
2,053,653	-		DDA3937_RS09135	0.63	-1.0
2,053,653	-		DDA3937_RS09135	0.63	+0.3
2,053,653	-		DDA3937_RS09135	0.63	+0.1
2,053,653	-		DDA3937_RS09135	0.63	-1.1
2,053,653	-		DDA3937_RS09135	0.63	-0.3
2,053,656	-		DDA3937_RS09135	0.64	-1.3
2,053,688	+		DDA3937_RS09135	0.68	-1.1
2,053,689	-		DDA3937_RS09135	0.68	+0.7
2,053,757	+		DDA3937_RS09135	0.78	+1.3
2,053,781	+				+0.7
2,053,782	-		DDA3937_RS09135	0.81	-0.6
2,053,825	+		DDA3937_RS09135	0.87	-1.6
2,053,835	+		DDA3937_RS09135	0.88	-1.1
2,053,835	+		DDA3937_RS09135	0.88	-0.5
2,053,835	+		DDA3937_RS09135	0.88	-0.6
2,053,835	+		DDA3937_RS09135	0.88	-0.6
2,053,835	+		DDA3937_RS09135	0.88	-0.1
2,053,835	+		DDA3937_RS09135	0.88	-1.6
2,053,835	+		DDA3937_RS09135	0.88	+0.5
2,053,835	+		DDA3937_RS09135	0.88	-0.2
2,053,836	-		DDA3937_RS09135	0.88	+1.8
2,053,836	-		DDA3937_RS09135	0.88	-0.6
2,053,836	-		DDA3937_RS09135	0.88	+0.2
2,053,836	-		DDA3937_RS09135	0.88	-2.2
2,053,836	-		DDA3937_RS09135	0.88	+0.3
2,053,836	-		DDA3937_RS09135	0.88	-0.9
2,053,836	-		DDA3937_RS09135	0.88	-1.1
2,053,836	-		DDA3937_RS09135	0.88	-1.1
2,053,837	+		DDA3937_RS09135	0.88	-0.9
2,053,838	-		DDA3937_RS09135	0.89	-0.9
2,053,920	-				-0.9
2,053,920	-				-0.3
2,053,925	+				-2.2
2,053,925	+				-0.4
2,053,926	-				+0.7
2,053,926	-				-0.9
2,053,926	-				-2.5
2,053,926	-				+0.1
2,053,929	+				-0.2
2,053,929	+				-1.0
2,053,929	+				-0.9
2,053,930	-				+0.4
2,053,930	-				-1.0
2,053,947	+				-0.5
2,053,948	-				-0.6
2,053,948	-				-1.5
2,053,948	-				-0.7
2,054,015	-				-0.1
2,054,039	+				+0.3
2,054,040	-				-0.1
2,054,040	-				-0.6
2,054,041	+				+0.4
2,054,042	-				-0.1
2,054,136	+				+1.7
2,054,136	+				+0.3
2,054,139	+				-1.0
2,054,139	+				+1.0
2,054,139	+				-0.5
2,054,139	+				-1.3
2,054,140	-				-0.9