Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08755

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,974,884	-		DDA3937_RS08750	0.47	-1.3
1,974,884	-		DDA3937_RS08750	0.47	-1.0
1,974,983	-		DDA3937_RS08750	0.54	+1.0
1,975,193	+		DDA3937_RS08750	0.70	-0.2
1,975,201	+		DDA3937_RS08750	0.71	-2.3
1,975,201	+		DDA3937_RS08750	0.71	+0.2
1,975,201	+		DDA3937_RS08750	0.71	-0.2
1,975,201	+		DDA3937_RS08750	0.71	+0.5
1,975,202	-		DDA3937_RS08750	0.71	+1.0
1,975,285	+		DDA3937_RS08750	0.77	-0.4
1,975,285	+		DDA3937_RS08750	0.77	+0.2
1,975,285	+		DDA3937_RS08750	0.77	-2.3
1,975,285	+		DDA3937_RS08750	0.77	-1.1
1,975,286	-		DDA3937_RS08750	0.77	-1.1
1,975,286	-		DDA3937_RS08750	0.77	+0.9
1,975,286	-		DDA3937_RS08750	0.77	-0.3
1,975,286	-		DDA3937_RS08750	0.77	-0.3
1,975,425	+		DDA3937_RS08750	0.87	-0.4
1,975,650	-				-0.7
1,975,735	+				-0.0
1,975,736	-				-0.9
1,975,825	+				-0.8
1,975,825	+				-1.3
1,975,826	-				-0.5
1,975,858	+				+0.2
1,975,859	-				-2.4
1,975,944	+				-1.2
1,975,945	-				-1.1
1,975,945	-				-2.1
1,975,945	-				-0.3
1,976,120	-		DDA3937_RS08755	0.13	-1.3
1,976,150	+		DDA3937_RS08755	0.15	-1.1
1,976,150	+		DDA3937_RS08755	0.15	-0.0
1,976,252	+		DDA3937_RS08755	0.19	-0.8
1,976,302	+		DDA3937_RS08755	0.21	-0.1
1,976,305	+		DDA3937_RS08755	0.21	+0.2
1,976,306	-		DDA3937_RS08755	0.21	-0.7
1,976,357	+		DDA3937_RS08755	0.24	-1.1
1,976,357	+		DDA3937_RS08755	0.24	-0.8
1,976,357	+		DDA3937_RS08755	0.24	-0.4
1,976,357	+		DDA3937_RS08755	0.24	-0.2
1,976,357	+		DDA3937_RS08755	0.24	-0.8
1,976,358	-		DDA3937_RS08755	0.24	-1.6
1,976,358	-		DDA3937_RS08755	0.24	+0.9
1,976,358	-		DDA3937_RS08755	0.24	+1.5
1,976,358	-		DDA3937_RS08755	0.24	-1.1
1,976,358	-		DDA3937_RS08755	0.24	-3.2
1,976,358	-		DDA3937_RS08755	0.24	-0.5
1,976,450	+		DDA3937_RS08755	0.28	-0.8
1,976,450	+		DDA3937_RS08755	0.28	-1.6
1,976,451	-		DDA3937_RS08755	0.28	-0.8
1,976,460	-		DDA3937_RS08755	0.28	-1.8
1,976,460	-		DDA3937_RS08755	0.28	-1.0
1,976,460	-		DDA3937_RS08755	0.28	+0.3
1,976,486	+		DDA3937_RS08755	0.29	-1.0
1,976,486	+		DDA3937_RS08755	0.29	+1.2
1,976,487	-		DDA3937_RS08755	0.29	-0.9
1,976,500	+		DDA3937_RS08755	0.30	-0.9
1,976,528	+		DDA3937_RS08755	0.31	-0.8
1,976,528	+				+1.1
1,976,528	+		DDA3937_RS08755	0.31	+0.3
1,976,529	-		DDA3937_RS08755	0.31	+1.2
1,976,529	-		DDA3937_RS08755	0.31	+0.3
1,976,529	-		DDA3937_RS08755	0.31	+0.4
1,976,529	-		DDA3937_RS08755	0.31	-2.4
1,976,529	-		DDA3937_RS08755	0.31	+0.4
1,976,567	+		DDA3937_RS08755	0.33	+0.7
1,976,568	-		DDA3937_RS08755	0.33	+0.7
1,976,696	-		DDA3937_RS08755	0.38	-0.4
1,976,789	+		DDA3937_RS08755	0.42	-0.9
1,976,790	-		DDA3937_RS08755	0.42	-1.7
1,976,882	+		DDA3937_RS08755	0.46	-0.7
1,976,882	+		DDA3937_RS08755	0.46	-0.7
1,976,882	+		DDA3937_RS08755	0.46	-1.3
1,976,883	-		DDA3937_RS08755	0.46	-0.3
1,976,883	-		DDA3937_RS08755	0.46	-0.1
1,976,887	+		DDA3937_RS08755	0.47	-0.8
1,976,910	-		DDA3937_RS08755	0.48	-0.1
1,976,910	-		DDA3937_RS08755	0.48	+1.0
1,977,147	+		DDA3937_RS08755	0.58	-0.6
1,977,147	+		DDA3937_RS08755	0.58	-0.4
1,977,149	+		DDA3937_RS08755	0.58	+0.1
1,977,149	+		DDA3937_RS08755	0.58	-1.1
1,977,150	-		DDA3937_RS08755	0.58	-0.5
1,977,176	+		DDA3937_RS08755	0.59	-0.0
1,977,176	+		DDA3937_RS08755	0.59	-0.6
1,977,177	-		DDA3937_RS08755	0.59	-2.1
1,977,178	+		DDA3937_RS08755	0.59	-2.5
1,977,191	+		DDA3937_RS08755	0.60	-0.5
1,977,191	+		DDA3937_RS08755	0.60	-0.3
1,977,397	+		DDA3937_RS08755	0.69	-1.0
1,977,587	+		DDA3937_RS08755	0.77	-0.4
1,977,588	-		DDA3937_RS08755	0.77	-0.5
1,977,647	+		DDA3937_RS08755	0.79	-1.2
1,977,647	+		DDA3937_RS08755	0.79	-1.5
1,977,647	+		DDA3937_RS08755	0.79	-1.5
1,977,650	+		DDA3937_RS08755	0.80	-0.3
1,977,650	+		DDA3937_RS08755	0.80	+2.1
1,977,650	+		DDA3937_RS08755	0.80	-0.3
1,977,650	+		DDA3937_RS08755	0.80	-0.4
1,977,650	+		DDA3937_RS08755	0.80	-0.5
1,977,651	-		DDA3937_RS08755	0.80	+0.3
1,977,651	-		DDA3937_RS08755	0.80	-2.7
1,977,651	-		DDA3937_RS08755	0.80	-0.8
1,977,651	-		DDA3937_RS08755	0.80	+0.4
1,977,651	-		DDA3937_RS08755	0.80	-0.1
1,977,651	-		DDA3937_RS08755	0.80	+0.7
1,977,701	+		DDA3937_RS08755	0.82	+0.2
1,977,701	+		DDA3937_RS08755	0.82	-2.3
1,977,702	-		DDA3937_RS08755	0.82	-1.7
1,977,702	-		DDA3937_RS08755	0.82	-1.3
1,977,702	-		DDA3937_RS08755	0.82	-0.9
1,977,714	-		DDA3937_RS08755	0.82	-0.4
1,977,714	-		DDA3937_RS08755	0.82	-1.2
1,977,764	+		DDA3937_RS08755	0.85	-1.4
1,977,765	-		DDA3937_RS08755	0.85	+0.0
1,977,880	-		DDA3937_RS08755	0.90	-0.4
1,977,890	+				+0.0
1,977,891	-				+0.0
1,978,019	+				-0.5
1,978,019	+				-1.1
1,978,020	-				-0.4
1,978,108	+				-0.6
1,978,108	+				-2.1
1,978,108	+				+1.3
1,978,109	-				-1.3
1,978,109	-				+0.7
1,978,109	-				-1.3
1,978,119	-				-1.0
1,978,119	-				-0.1
1,978,119	-				-0.4
1,978,119	-				+0.8
1,978,119	-				+1.1
1,978,122	+				+2.0
1,978,122	+				-1.3
1,978,122	+				-0.7
1,978,122	+				+0.5
1,978,123	-				-0.7
1,978,126	-				-0.6
1,978,126	-				-1.2
1,978,138	+				-2.7
1,978,139	-				-0.2
1,978,139	-				-0.7
1,978,139	-				-1.8
1,978,221	+				-0.6
1,978,258	+				+0.5
1,978,258	+				-0.7
1,978,258	+				-2.6
1,978,258	+				-3.2
1,978,258	+				-0.1
1,978,258	+				+0.3
1,978,259	-				+1.2
1,978,259	-				-0.3
1,978,259	-				-2.3
1,978,259	-				+0.7
1,978,259	-				-2.0
1,978,259	-				+0.0
1,978,259	-				-0.5
1,978,259	-				-1.2
1,978,260	+				+1.3
1,978,261	-				+0.3
1,978,261	-				-0.4
1,978,261	-				-0.8
1,978,261	-				+0.2
1,978,337	-				+0.3
1,978,360	-				-0.6
1,978,360	-				-0.7
1,978,381	+				+0.0
1,978,381	+				-1.6
1,978,382	-				-1.6
1,978,398	+				+0.3
1,978,398	+				+0.3
1,978,398	+				-0.8
1,978,399	-				+1.3
1,978,399	-				+0.3
1,978,412	+				-0.6
1,978,414	+				-0.3
1,978,414	+				-0.9
1,978,414	+				-0.8
1,978,414	+				+0.4
1,978,414	+				-0.3
1,978,415	-				-1.4
1,978,415	-				+0.1
1,978,415	-				+0.7
1,978,415	-				+0.3
1,978,415	-				+1.0
1,978,433	+				-0.6
1,978,434	-				-0.8
1,978,434	-				+6.2
1,978,527	+				-0.6
1,978,527	+				+1.4
1,978,527	+				+0.2
1,978,527	+				-0.6
1,978,528	-				-0.1
1,978,528	-				+0.0
1,978,528	-				+1.0
1,978,528	-				-0.6
1,978,540	+				-1.3
1,978,576	+				-1.1
1,978,650	-				+0.5
1,978,651	+				-0.1
1,978,652	-				-0.6
1,978,682	-				-0.7
1,978,742	+				-1.1
1,978,742	+				+1.2
1,978,742	+				-0.4
1,978,743	-				+0.4
1,978,744	+				-1.9
1,978,744	+				-1.7
1,978,744	+				+0.1
1,978,744	+				+1.0
1,978,745	-				+0.3
1,978,745	-				-2.1
1,978,745	-				-0.7
1,978,796	+				-0.7
1,978,796	+				+0.7
1,978,958	+		DDA3937_RS08765	0.17	-0.7
1,978,958	+		DDA3937_RS08765	0.17	-1.0
1,978,958	+		DDA3937_RS08765	0.17	-0.7
1,978,958	+		DDA3937_RS08765	0.17	-0.3
1,979,026	+		DDA3937_RS08765	0.20	-0.4
1,979,026	+		DDA3937_RS08765	0.20	-1.1
1,979,026	+				+2.3
1,979,027	-		DDA3937_RS08765	0.20	+0.5
1,979,099	+		DDA3937_RS08765	0.23	-0.2
1,979,099	+		DDA3937_RS08765	0.23	-0.3
1,979,100	-		DDA3937_RS08765	0.23	-0.8
1,979,100	-		DDA3937_RS08765	0.23	-0.3