Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08420 and DDA3937_RS22760 overlap by 11 nucleotides DDA3937_RS22760 and DDA3937_RS08425 are separated by 535 nucleotides DDA3937_RS08425 and DDA3937_RS08430 are separated by 109 nucleotides DDA3937_RS08430 and DDA3937_RS08435 are separated by 94 nucleotides
DDA3937_RS08420: DDA3937_RS08420 - transposase, at 1,905,443 to 1,905,625
_RS08420
DDA3937_RS22760: DDA3937_RS22760 - type VI secretion system tube protein Hcp, at 1,905,615 to 1,905,716
_RS22760
DDA3937_RS08425: DDA3937_RS08425 - tRNA-Asn, at 1,906,252 to 1,906,327
_RS08425
DDA3937_RS08430: DDA3937_RS08430 - DgsA anti-repressor MtfA, at 1,906,437 to 1,907,228
_RS08430
DDA3937_RS08435: DDA3937_RS08435 - tRNA-Ser, at 1,907,323 to 1,907,412
_RS08435
Position (kb) 1906
1907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1905.275 kb on + strand at 1905.276 kb on - strand at 1905.276 kb on - strand at 1905.276 kb on - strand at 1905.276 kb on - strand at 1905.276 kb on - strand at 1905.276 kb on - strand at 1905.323 kb on - strand at 1905.338 kb on - strand at 1905.338 kb on - strand at 1905.394 kb on - strand at 1905.400 kb on + strand at 1905.400 kb on + strand at 1905.400 kb on + strand at 1905.429 kb on + strand at 1905.429 kb on + strand at 1905.429 kb on + strand at 1905.429 kb on + strand at 1905.429 kb on + strand at 1905.429 kb on + strand at 1905.430 kb on - strand at 1905.430 kb on - strand at 1905.444 kb on + strand at 1905.445 kb on - strand at 1905.445 kb on - strand at 1905.476 kb on + strand, within DDA3937_RS08420 at 1905.510 kb on + strand, within DDA3937_RS08420 at 1905.609 kb on + strand at 1905.609 kb on + strand at 1905.610 kb on - strand at 1905.610 kb on - strand at 1905.610 kb on - strand at 1905.610 kb on - strand at 1905.625 kb on + strand at 1905.626 kb on - strand, within DDA3937_RS22760 at 1905.626 kb on - strand, within DDA3937_RS22760 at 1905.626 kb on - strand, within DDA3937_RS22760 at 1905.698 kb on + strand, within DDA3937_RS22760 at 1905.698 kb on + strand, within DDA3937_RS22760 at 1905.698 kb on + strand, within DDA3937_RS22760 at 1905.699 kb on - strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.700 kb on + strand, within DDA3937_RS22760 at 1905.743 kb on + strand at 1905.743 kb on + strand at 1905.746 kb on + strand at 1905.769 kb on - strand at 1905.776 kb on - strand at 1905.802 kb on - strand at 1905.932 kb on + strand at 1905.932 kb on + strand at 1905.932 kb on + strand at 1905.933 kb on - strand at 1905.933 kb on - strand at 1905.933 kb on - strand at 1905.998 kb on - strand at 1906.083 kb on + strand at 1906.083 kb on + strand at 1906.083 kb on + strand at 1906.084 kb on - strand at 1906.095 kb on + strand at 1906.137 kb on + strand at 1906.137 kb on + strand at 1906.137 kb on + strand at 1906.137 kb on + strand at 1906.137 kb on + strand at 1906.137 kb on + strand at 1906.137 kb on + strand at 1906.137 kb on + strand at 1906.138 kb on - strand at 1906.138 kb on - strand at 1906.140 kb on + strand at 1906.285 kb on - strand, within DDA3937_RS08425 at 1906.365 kb on + strand at 1906.531 kb on + strand, within DDA3937_RS08430 at 1906.531 kb on + strand, within DDA3937_RS08430 at 1906.531 kb on + strand, within DDA3937_RS08430 at 1906.531 kb on + strand, within DDA3937_RS08430 at 1906.531 kb on + strand, within DDA3937_RS08430 at 1906.532 kb on - strand, within DDA3937_RS08430 at 1906.532 kb on - strand, within DDA3937_RS08430 at 1906.533 kb on + strand, within DDA3937_RS08430 at 1906.533 kb on + strand, within DDA3937_RS08430 at 1906.663 kb on - strand, within DDA3937_RS08430 at 1906.663 kb on - strand, within DDA3937_RS08430 at 1906.663 kb on - strand, within DDA3937_RS08430 at 1906.716 kb on + strand at 1906.716 kb on + strand, within DDA3937_RS08430 at 1906.717 kb on - strand, within DDA3937_RS08430 at 1906.717 kb on - strand, within DDA3937_RS08430 at 1906.887 kb on + strand, within DDA3937_RS08430 at 1906.888 kb on - strand, within DDA3937_RS08430 at 1906.888 kb on - strand, within DDA3937_RS08430 at 1906.943 kb on + strand, within DDA3937_RS08430 at 1906.943 kb on + strand, within DDA3937_RS08430 at 1906.943 kb on + strand, within DDA3937_RS08430 at 1906.965 kb on + strand, within DDA3937_RS08430 at 1906.965 kb on + strand, within DDA3937_RS08430 at 1906.965 kb on + strand, within DDA3937_RS08430 at 1906.965 kb on + strand, within DDA3937_RS08430 at 1906.966 kb on - strand, within DDA3937_RS08430 at 1906.966 kb on - strand, within DDA3937_RS08430 at 1906.966 kb on - strand, within DDA3937_RS08430 at 1907.046 kb on + strand, within DDA3937_RS08430 at 1907.047 kb on - strand, within DDA3937_RS08430 at 1907.047 kb on - strand, within DDA3937_RS08430 at 1907.047 kb on - strand, within DDA3937_RS08430 at 1907.120 kb on + strand, within DDA3937_RS08430 at 1907.120 kb on + strand, within DDA3937_RS08430 at 1907.121 kb on - strand, within DDA3937_RS08430 at 1907.121 kb on - strand, within DDA3937_RS08430 at 1907.241 kb on + strand at 1907.242 kb on - strand at 1907.242 kb on - strand at 1907.282 kb on + strand at 1907.283 kb on - strand at 1907.292 kb on + strand at 1907.293 kb on - strand at 1907.305 kb on + strand at 1907.305 kb on + strand at 1907.306 kb on - strand at 1907.306 kb on - strand at 1907.307 kb on + strand at 1907.307 kb on + strand at 1907.307 kb on + strand at 1907.308 kb on - strand at 1907.308 kb on - strand at 1907.308 kb on - strand at 1907.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,905,275 + -0.8 1,905,276 - -0.2 1,905,276 - -0.6 1,905,276 - -0.8 1,905,276 - -1.1 1,905,276 - -1.6 1,905,276 - -0.9 1,905,323 - +0.7 1,905,338 - -1.3 1,905,338 - +0.3 1,905,394 - -0.1 1,905,400 + -0.7 1,905,400 + -0.6 1,905,400 + +0.3 1,905,429 + +1.3 1,905,429 + -0.6 1,905,429 + -0.8 1,905,429 + -0.0 1,905,429 + +0.4 1,905,429 + -0.9 1,905,430 - +1.7 1,905,430 - -0.7 1,905,444 + -0.1 1,905,445 - -1.1 1,905,445 - -2.1 1,905,476 + DDA3937_RS08420 0.18 +0.0 1,905,510 + DDA3937_RS08420 0.37 +0.2 1,905,609 + +1.7 1,905,609 + -0.3 1,905,610 - +0.2 1,905,610 - -0.6 1,905,610 - +1.3 1,905,610 - -0.3 1,905,625 + -1.3 1,905,626 - DDA3937_RS22760 0.11 -0.6 1,905,626 - DDA3937_RS22760 0.11 +1.0 1,905,626 - DDA3937_RS22760 0.11 -0.4 1,905,698 + DDA3937_RS22760 0.81 +0.1 1,905,698 + DDA3937_RS22760 0.81 -1.8 1,905,698 + DDA3937_RS22760 0.81 +0.3 1,905,699 - DDA3937_RS22760 0.82 -0.4 1,905,700 + DDA3937_RS22760 0.83 -1.1 1,905,700 + DDA3937_RS22760 0.83 -0.3 1,905,700 + DDA3937_RS22760 0.83 -0.1 1,905,700 + DDA3937_RS22760 0.83 +0.5 1,905,700 + DDA3937_RS22760 0.83 -0.1 1,905,700 + DDA3937_RS22760 0.83 -1.0 1,905,700 + DDA3937_RS22760 0.83 -0.3 1,905,700 + DDA3937_RS22760 0.83 -0.1 1,905,700 + DDA3937_RS22760 0.83 +1.0 1,905,700 + DDA3937_RS22760 0.83 -1.6 1,905,700 + DDA3937_RS22760 0.83 -0.3 1,905,700 + DDA3937_RS22760 0.83 +0.9 1,905,700 + +4.3 1,905,700 + DDA3937_RS22760 0.83 +0.0 1,905,700 + DDA3937_RS22760 0.83 -0.7 1,905,700 + DDA3937_RS22760 0.83 -0.7 1,905,700 + DDA3937_RS22760 0.83 +1.3 1,905,700 + DDA3937_RS22760 0.83 +0.5 1,905,700 + DDA3937_RS22760 0.83 -0.1 1,905,700 + DDA3937_RS22760 0.83 -0.2 1,905,700 + DDA3937_RS22760 0.83 -0.6 1,905,700 + DDA3937_RS22760 0.83 -0.5 1,905,700 + DDA3937_RS22760 0.83 -0.4 1,905,700 + DDA3937_RS22760 0.83 +1.0 1,905,700 + DDA3937_RS22760 0.83 +1.2 1,905,700 + DDA3937_RS22760 0.83 -2.4 1,905,743 + -0.3 1,905,743 + +0.1 1,905,746 + +0.2 1,905,769 - -0.3 1,905,776 - -0.6 1,905,802 - -0.1 1,905,932 + -1.5 1,905,932 + -0.3 1,905,932 + +0.3 1,905,933 - -0.6 1,905,933 - +0.2 1,905,933 - -0.3 1,905,998 - -1.7 1,906,083 + +3.1 1,906,083 + -0.0 1,906,083 + -0.6 1,906,084 - -1.6 1,906,095 + +1.7 1,906,137 + -2.3 1,906,137 + +0.5 1,906,137 + -0.0 1,906,137 + -0.1 1,906,137 + -0.5 1,906,137 + -0.5 1,906,137 + -1.2 1,906,137 + -0.0 1,906,138 - +0.2 1,906,138 - +0.4 1,906,140 + -1.3 1,906,285 - DDA3937_RS08425 0.43 -1.1 1,906,365 + +0.7 1,906,531 + DDA3937_RS08430 0.12 +0.7 1,906,531 + DDA3937_RS08430 0.12 -0.8 1,906,531 + DDA3937_RS08430 0.12 -1.0 1,906,531 + DDA3937_RS08430 0.12 -0.3 1,906,531 + DDA3937_RS08430 0.12 -1.1 1,906,532 - DDA3937_RS08430 0.12 -0.0 1,906,532 - DDA3937_RS08430 0.12 -0.4 1,906,533 + DDA3937_RS08430 0.12 +1.7 1,906,533 + DDA3937_RS08430 0.12 -0.5 1,906,663 - DDA3937_RS08430 0.29 -1.7 1,906,663 - DDA3937_RS08430 0.29 -0.9 1,906,663 - DDA3937_RS08430 0.29 -0.1 1,906,716 + -0.3 1,906,716 + DDA3937_RS08430 0.35 -0.2 1,906,717 - DDA3937_RS08430 0.35 -1.4 1,906,717 - DDA3937_RS08430 0.35 -0.8 1,906,887 + DDA3937_RS08430 0.57 +0.2 1,906,888 - DDA3937_RS08430 0.57 -0.4 1,906,888 - DDA3937_RS08430 0.57 -0.8 1,906,943 + DDA3937_RS08430 0.64 +1.5 1,906,943 + DDA3937_RS08430 0.64 -0.8 1,906,943 + DDA3937_RS08430 0.64 +0.1 1,906,965 + DDA3937_RS08430 0.67 +0.4 1,906,965 + DDA3937_RS08430 0.67 -0.3 1,906,965 + DDA3937_RS08430 0.67 -0.3 1,906,965 + DDA3937_RS08430 0.67 -3.4 1,906,966 - DDA3937_RS08430 0.67 +0.4 1,906,966 - DDA3937_RS08430 0.67 -0.3 1,906,966 - DDA3937_RS08430 0.67 -1.4 1,907,046 + DDA3937_RS08430 0.77 -1.3 1,907,047 - DDA3937_RS08430 0.77 -0.4 1,907,047 - DDA3937_RS08430 0.77 -2.3 1,907,047 - DDA3937_RS08430 0.77 -1.8 1,907,120 + DDA3937_RS08430 0.86 -0.9 1,907,120 + DDA3937_RS08430 0.86 -0.9 1,907,121 - DDA3937_RS08430 0.86 -2.3 1,907,121 - DDA3937_RS08430 0.86 -0.3 1,907,241 + -1.3 1,907,242 - -0.8 1,907,242 - -1.0 1,907,282 + +3.1 1,907,283 - -3.2 1,907,292 + -0.7 1,907,293 - -0.5 1,907,305 + -1.6 1,907,305 + -1.3 1,907,306 - +1.5 1,907,306 - +0.0 1,907,307 + +0.5 1,907,307 + -0.4 1,907,307 + -2.3 1,907,308 - -0.3 1,907,308 - +0.5 1,907,308 - +0.7 1,907,308 - -1.1
Or see this region's nucleotide sequence