Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08310

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08305 and DDA3937_RS08310 are separated by 63 nucleotidesDDA3937_RS08310 and DDA3937_RS08315 are separated by 207 nucleotides DDA3937_RS08305: DDA3937_RS08305 - TetR/AcrR family transcriptional regulator, at 1,877,343 to 1,877,909 _RS08305 DDA3937_RS08310: DDA3937_RS08310 - nuclear transport factor 2 family protein, at 1,877,973 to 1,878,449 _RS08310 DDA3937_RS08315: DDA3937_RS08315 - alpha/beta hydrolase, at 1,878,657 to 1,879,664 _RS08315 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1877.059 kb on + strandat 1877.059 kb on + strandat 1877.060 kb on - strandat 1877.082 kb on + strandat 1877.091 kb on + strandat 1877.091 kb on + strandat 1877.160 kb on - strandat 1877.403 kb on + strand, within DDA3937_RS08305at 1877.403 kb on + strand, within DDA3937_RS08305at 1877.471 kb on + strand, within DDA3937_RS08305at 1877.471 kb on + strand, within DDA3937_RS08305at 1877.471 kb on + strand, within DDA3937_RS08305at 1877.475 kb on + strand, within DDA3937_RS08305at 1877.475 kb on + strand, within DDA3937_RS08305at 1877.475 kb on + strand, within DDA3937_RS08305at 1877.600 kb on + strand, within DDA3937_RS08305at 1877.600 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.740 kb on - strand, within DDA3937_RS08305at 1877.768 kb on + strand, within DDA3937_RS08305at 1877.800 kb on + strand, within DDA3937_RS08305at 1877.800 kb on + strandat 1877.801 kb on - strand, within DDA3937_RS08305at 1877.806 kb on + strand, within DDA3937_RS08305at 1877.806 kb on + strand, within DDA3937_RS08305at 1877.806 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.850 kb on + strand, within DDA3937_RS08305at 1877.890 kb on + strandat 1877.891 kb on - strandat 1877.930 kb on + strandat 1877.931 kb on - strandat 1877.931 kb on - strandat 1877.947 kb on + strandat 1877.948 kb on - strandat 1877.948 kb on - strandat 1877.955 kb on + strandat 1878.037 kb on + strand, within DDA3937_RS08310at 1878.078 kb on - strand, within DDA3937_RS08310at 1878.078 kb on - strand, within DDA3937_RS08310at 1878.093 kb on + strand, within DDA3937_RS08310at 1878.116 kb on + strand, within DDA3937_RS08310at 1878.117 kb on - strand, within DDA3937_RS08310at 1878.137 kb on + strand, within DDA3937_RS08310at 1878.201 kb on - strand, within DDA3937_RS08310at 1878.253 kb on - strand, within DDA3937_RS08310at 1878.350 kb on + strand, within DDA3937_RS08310at 1878.350 kb on + strand, within DDA3937_RS08310at 1878.351 kb on - strand, within DDA3937_RS08310at 1878.448 kb on - strandat 1878.460 kb on + strandat 1878.503 kb on - strandat 1878.551 kb on + strandat 1878.551 kb on + strandat 1878.551 kb on + strandat 1878.552 kb on - strandat 1878.575 kb on + strandat 1878.602 kb on + strandat 1878.653 kb on + strandat 1878.654 kb on - strandat 1878.656 kb on + strandat 1878.657 kb on - strandat 1878.663 kb on - strandat 1878.665 kb on + strandat 1878.666 kb on - strandat 1878.671 kb on + strandat 1878.672 kb on - strandat 1878.672 kb on - strandat 1878.788 kb on + strand, within DDA3937_RS08315at 1878.789 kb on - strand, within DDA3937_RS08315at 1878.926 kb on + strand, within DDA3937_RS08315at 1878.926 kb on + strandat 1878.926 kb on + strand, within DDA3937_RS08315at 1879.062 kb on + strand, within DDA3937_RS08315at 1879.062 kb on + strand, within DDA3937_RS08315at 1879.062 kb on + strand, within DDA3937_RS08315at 1879.062 kb on + strand, within DDA3937_RS08315at 1879.063 kb on - strand, within DDA3937_RS08315at 1879.063 kb on - strand, within DDA3937_RS08315at 1879.064 kb on + strand, within DDA3937_RS08315at 1879.064 kb on + strand, within DDA3937_RS08315at 1879.064 kb on + strand, within DDA3937_RS08315at 1879.064 kb on + strand, within DDA3937_RS08315at 1879.064 kb on + strand, within DDA3937_RS08315at 1879.064 kb on + strand, within DDA3937_RS08315at 1879.064 kb on + strandat 1879.064 kb on + strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.065 kb on - strand, within DDA3937_RS08315at 1879.110 kb on + strandat 1879.110 kb on + strand, within DDA3937_RS08315at 1879.110 kb on + strand, within DDA3937_RS08315at 1879.110 kb on + strand, within DDA3937_RS08315at 1879.111 kb on - strand, within DDA3937_RS08315at 1879.111 kb on - strand, within DDA3937_RS08315at 1879.180 kb on + strand, within DDA3937_RS08315at 1879.180 kb on + strand, within DDA3937_RS08315at 1879.239 kb on - strand, within DDA3937_RS08315at 1879.308 kb on + strand, within DDA3937_RS08315at 1879.308 kb on + strand, within DDA3937_RS08315at 1879.308 kb on + strand, within DDA3937_RS08315at 1879.308 kb on + strand, within DDA3937_RS08315at 1879.309 kb on - strand, within DDA3937_RS08315at 1879.309 kb on - strand, within DDA3937_RS08315at 1879.309 kb on - strand, within DDA3937_RS08315at 1879.309 kb on - strand, within DDA3937_RS08315at 1879.310 kb on + strand, within DDA3937_RS08315at 1879.310 kb on + strand, within DDA3937_RS08315at 1879.310 kb on + strand, within DDA3937_RS08315at 1879.330 kb on - strand, within DDA3937_RS08315at 1879.346 kb on + strand, within DDA3937_RS08315at 1879.346 kb on + strand, within DDA3937_RS08315at 1879.346 kb on + strand, within DDA3937_RS08315at 1879.347 kb on - strand, within DDA3937_RS08315at 1879.347 kb on - strand, within DDA3937_RS08315at 1879.347 kb on - strand, within DDA3937_RS08315at 1879.371 kb on + strand, within DDA3937_RS08315at 1879.371 kb on + strand, within DDA3937_RS08315at 1879.371 kb on + strand, within DDA3937_RS08315at 1879.371 kb on + strand, within DDA3937_RS08315at 1879.371 kb on + strand, within DDA3937_RS08315at 1879.371 kb on + strand, within DDA3937_RS08315at 1879.371 kb on + strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.372 kb on - strand, within DDA3937_RS08315at 1879.379 kb on + strand, within DDA3937_RS08315at 1879.380 kb on - strand, within DDA3937_RS08315at 1879.394 kb on + strand, within DDA3937_RS08315at 1879.394 kb on + strand, within DDA3937_RS08315at 1879.395 kb on - strand, within DDA3937_RS08315at 1879.395 kb on - strand, within DDA3937_RS08315at 1879.395 kb on - strand, within DDA3937_RS08315at 1879.397 kb on + strandat 1879.397 kb on + strand, within DDA3937_RS08315at 1879.397 kb on + strand, within DDA3937_RS08315at 1879.398 kb on - strand, within DDA3937_RS08315at 1879.398 kb on - strand, within DDA3937_RS08315

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,877,059 + -0.2
1,877,059 + -0.2
1,877,060 - -0.5
1,877,082 + +0.1
1,877,091 + -0.7
1,877,091 + -1.8
1,877,160 - -1.2
1,877,403 + DDA3937_RS08305 0.11 -2.2
1,877,403 + DDA3937_RS08305 0.11 +0.1
1,877,471 + DDA3937_RS08305 0.23 -0.5
1,877,471 + DDA3937_RS08305 0.23 +0.7
1,877,471 + DDA3937_RS08305 0.23 +2.3
1,877,475 + DDA3937_RS08305 0.23 -0.8
1,877,475 + DDA3937_RS08305 0.23 -0.8
1,877,475 + DDA3937_RS08305 0.23 -0.2
1,877,600 + DDA3937_RS08305 0.45 -0.8
1,877,600 + DDA3937_RS08305 0.45 -1.0
1,877,739 + DDA3937_RS08305 0.70 -0.1
1,877,739 + DDA3937_RS08305 0.70 -0.4
1,877,739 + DDA3937_RS08305 0.70 -0.6
1,877,739 + DDA3937_RS08305 0.70 +2.1
1,877,740 - DDA3937_RS08305 0.70 -0.8
1,877,768 + DDA3937_RS08305 0.75 +0.0
1,877,800 + DDA3937_RS08305 0.81 +0.9
1,877,800 + -1.2
1,877,801 - DDA3937_RS08305 0.81 +1.3
1,877,806 + DDA3937_RS08305 0.82 -0.6
1,877,806 + DDA3937_RS08305 0.82 +0.5
1,877,806 + DDA3937_RS08305 0.82 -1.6
1,877,828 + DDA3937_RS08305 0.86 -2.8
1,877,828 + DDA3937_RS08305 0.86 -0.8
1,877,828 + DDA3937_RS08305 0.86 -0.3
1,877,828 + DDA3937_RS08305 0.86 +0.4
1,877,828 + DDA3937_RS08305 0.86 +0.3
1,877,828 + DDA3937_RS08305 0.86 -1.0
1,877,828 + DDA3937_RS08305 0.86 +0.8
1,877,850 + DDA3937_RS08305 0.89 -1.4
1,877,890 + +0.3
1,877,891 - +0.0
1,877,930 + +0.2
1,877,931 - +0.6
1,877,931 - -1.6
1,877,947 + +0.4
1,877,948 - -0.1
1,877,948 - +0.0
1,877,955 + +0.2
1,878,037 + DDA3937_RS08310 0.13 -3.2
1,878,078 - DDA3937_RS08310 0.22 +0.1
1,878,078 - DDA3937_RS08310 0.22 -1.2
1,878,093 + DDA3937_RS08310 0.25 -1.1
1,878,116 + DDA3937_RS08310 0.30 -0.6
1,878,117 - DDA3937_RS08310 0.30 -1.6
1,878,137 + DDA3937_RS08310 0.34 -0.4
1,878,201 - DDA3937_RS08310 0.48 -1.2
1,878,253 - DDA3937_RS08310 0.59 +1.2
1,878,350 + DDA3937_RS08310 0.79 -0.7
1,878,350 + DDA3937_RS08310 0.79 +0.8
1,878,351 - DDA3937_RS08310 0.79 -1.4
1,878,448 - -1.1
1,878,460 + -0.8
1,878,503 - -0.3
1,878,551 + -0.7
1,878,551 + -0.5
1,878,551 + -0.2
1,878,552 - -0.3
1,878,575 + -1.1
1,878,602 + -1.1
1,878,653 + +0.3
1,878,654 - +0.4
1,878,656 + +1.0
1,878,657 - -0.4
1,878,663 - -0.2
1,878,665 + -2.2
1,878,666 - -0.6
1,878,671 + -0.8
1,878,672 - +0.2
1,878,672 - +2.5
1,878,788 + DDA3937_RS08315 0.13 +0.3
1,878,789 - DDA3937_RS08315 0.13 +0.3
1,878,926 + DDA3937_RS08315 0.27 +0.8
1,878,926 + +0.4
1,878,926 + DDA3937_RS08315 0.27 -1.6
1,879,062 + DDA3937_RS08315 0.40 -1.1
1,879,062 + DDA3937_RS08315 0.40 -0.6
1,879,062 + DDA3937_RS08315 0.40 -0.7
1,879,062 + DDA3937_RS08315 0.40 -0.3
1,879,063 - DDA3937_RS08315 0.40 +0.0
1,879,063 - DDA3937_RS08315 0.40 -0.8
1,879,064 + DDA3937_RS08315 0.40 -1.4
1,879,064 + DDA3937_RS08315 0.40 -0.1
1,879,064 + DDA3937_RS08315 0.40 +0.8
1,879,064 + DDA3937_RS08315 0.40 -0.1
1,879,064 + DDA3937_RS08315 0.40 -0.5
1,879,064 + DDA3937_RS08315 0.40 -1.4
1,879,064 + +2.1
1,879,064 + DDA3937_RS08315 0.40 -0.7
1,879,065 - DDA3937_RS08315 0.40 -1.0
1,879,065 - DDA3937_RS08315 0.40 -0.2
1,879,065 - DDA3937_RS08315 0.40 -1.8
1,879,065 - DDA3937_RS08315 0.40 +0.3
1,879,065 - DDA3937_RS08315 0.40 -0.0
1,879,065 - DDA3937_RS08315 0.40 +0.8
1,879,065 - DDA3937_RS08315 0.40 -0.0
1,879,065 - DDA3937_RS08315 0.40 -1.2
1,879,065 - DDA3937_RS08315 0.40 -0.6
1,879,110 + +0.8
1,879,110 + DDA3937_RS08315 0.45 +0.4
1,879,110 + DDA3937_RS08315 0.45 -0.8
1,879,110 + DDA3937_RS08315 0.45 -0.1
1,879,111 - DDA3937_RS08315 0.45 -0.4
1,879,111 - DDA3937_RS08315 0.45 -0.2
1,879,180 + DDA3937_RS08315 0.52 -1.2
1,879,180 + DDA3937_RS08315 0.52 +0.4
1,879,239 - DDA3937_RS08315 0.58 -1.6
1,879,308 + DDA3937_RS08315 0.65 -1.8
1,879,308 + DDA3937_RS08315 0.65 -0.3
1,879,308 + DDA3937_RS08315 0.65 -0.0
1,879,308 + DDA3937_RS08315 0.65 -1.2
1,879,309 - DDA3937_RS08315 0.65 +0.0
1,879,309 - DDA3937_RS08315 0.65 +0.6
1,879,309 - DDA3937_RS08315 0.65 -1.1
1,879,309 - DDA3937_RS08315 0.65 +1.2
1,879,310 + DDA3937_RS08315 0.65 -0.4
1,879,310 + DDA3937_RS08315 0.65 +0.2
1,879,310 + DDA3937_RS08315 0.65 -1.1
1,879,330 - DDA3937_RS08315 0.67 -0.4
1,879,346 + DDA3937_RS08315 0.68 -0.9
1,879,346 + DDA3937_RS08315 0.68 -0.2
1,879,346 + DDA3937_RS08315 0.68 +0.1
1,879,347 - DDA3937_RS08315 0.68 -0.7
1,879,347 - DDA3937_RS08315 0.68 -0.8
1,879,347 - DDA3937_RS08315 0.68 -0.9
1,879,371 + DDA3937_RS08315 0.71 -0.8
1,879,371 + DDA3937_RS08315 0.71 -0.4
1,879,371 + DDA3937_RS08315 0.71 +0.2
1,879,371 + DDA3937_RS08315 0.71 +0.4
1,879,371 + DDA3937_RS08315 0.71 +0.0
1,879,371 + DDA3937_RS08315 0.71 +0.2
1,879,371 + DDA3937_RS08315 0.71 -0.3
1,879,372 - DDA3937_RS08315 0.71 +0.2
1,879,372 - DDA3937_RS08315 0.71 -0.0
1,879,372 - DDA3937_RS08315 0.71 +0.2
1,879,372 - DDA3937_RS08315 0.71 +1.1
1,879,372 - DDA3937_RS08315 0.71 +0.1
1,879,372 - DDA3937_RS08315 0.71 -1.2
1,879,372 - DDA3937_RS08315 0.71 +2.9
1,879,372 - DDA3937_RS08315 0.71 -0.6
1,879,372 - DDA3937_RS08315 0.71 -1.9
1,879,372 - DDA3937_RS08315 0.71 -1.4
1,879,372 - DDA3937_RS08315 0.71 -0.9
1,879,372 - DDA3937_RS08315 0.71 -0.2
1,879,379 + DDA3937_RS08315 0.72 +0.5
1,879,380 - DDA3937_RS08315 0.72 +0.4
1,879,394 + DDA3937_RS08315 0.73 -0.8
1,879,394 + DDA3937_RS08315 0.73 +0.8
1,879,395 - DDA3937_RS08315 0.73 -2.6
1,879,395 - DDA3937_RS08315 0.73 -1.2
1,879,395 - DDA3937_RS08315 0.73 +0.8
1,879,397 + -0.8
1,879,397 + DDA3937_RS08315 0.73 -0.4
1,879,397 + DDA3937_RS08315 0.73 -0.1
1,879,398 - DDA3937_RS08315 0.74 -0.2
1,879,398 - DDA3937_RS08315 0.74 -0.2

Or see this region's nucleotide sequence