Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08095

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,834,812	+				+0.8
1,834,812	+		DDA3937_RS08090	0.41	-2.4
1,834,813	-		DDA3937_RS08090	0.41	+0.6
1,834,813	-		DDA3937_RS08090	0.41	-2.1
1,834,813	-		DDA3937_RS08090	0.41	-0.4
1,834,813	-		DDA3937_RS08090	0.41	+0.8
1,834,816	+		DDA3937_RS08090	0.41	+0.1
1,834,816	+		DDA3937_RS08090	0.41	-0.8
1,834,816	+		DDA3937_RS08090	0.41	-0.4
1,834,816	+		DDA3937_RS08090	0.41	+0.4
1,834,816	+		DDA3937_RS08090	0.41	-1.1
1,834,816	+		DDA3937_RS08090	0.41	-0.2
1,834,816	+		DDA3937_RS08090	0.41	+0.3
1,834,816	+		DDA3937_RS08090	0.41	-2.5
1,834,816	+		DDA3937_RS08090	0.41	-0.6
1,834,816	+		DDA3937_RS08090	0.41	+0.5
1,834,816	+		DDA3937_RS08090	0.41	+1.7
1,834,816	+		DDA3937_RS08090	0.41	-0.4
1,834,816	+		DDA3937_RS08090	0.41	-1.2
1,834,816	+		DDA3937_RS08090	0.41	+0.6
1,834,817	-		DDA3937_RS08090	0.41	-1.1
1,834,817	-		DDA3937_RS08090	0.41	-1.9
1,834,817	-		DDA3937_RS08090	0.41	-0.5
1,834,817	-		DDA3937_RS08090	0.41	-0.4
1,834,817	-		DDA3937_RS08090	0.41	-2.0
1,834,817	-		DDA3937_RS08090	0.41	-0.3
1,834,817	-		DDA3937_RS08090	0.41	-0.7
1,834,817	-		DDA3937_RS08090	0.41	-0.8
1,834,817	-		DDA3937_RS08090	0.41	-2.8
1,834,817	-		DDA3937_RS08090	0.41	-1.1
1,834,817	-		DDA3937_RS08090	0.41	+0.6
1,834,817	-		DDA3937_RS08090	0.41	-0.7
1,834,817	-		DDA3937_RS08090	0.41	-0.1
1,834,817	-		DDA3937_RS08090	0.41	-1.9
1,834,817	-		DDA3937_RS08090	0.41	-1.9
1,834,817	-		DDA3937_RS08090	0.41	-0.2
1,834,817	-		DDA3937_RS08090	0.41	-0.5
1,834,819	-		DDA3937_RS08090	0.41	+0.1
1,834,819	-		DDA3937_RS08090	0.41	-0.4
1,834,819	-		DDA3937_RS08090	0.41	+1.4
1,834,819	-		DDA3937_RS08090	0.41	-0.6
1,834,819	-		DDA3937_RS08090	0.41	-0.4
1,834,827	+		DDA3937_RS08090	0.42	-1.3
1,834,827	+		DDA3937_RS08090	0.42	+0.3
1,834,827	+		DDA3937_RS08090	0.42	-0.2
1,834,828	-		DDA3937_RS08090	0.42	-0.7
1,834,905	+		DDA3937_RS08090	0.50	+0.7
1,834,905	+		DDA3937_RS08090	0.50	-1.5
1,834,905	+		DDA3937_RS08090	0.50	-2.0
1,834,905	+		DDA3937_RS08090	0.50	-1.5
1,834,905	+		DDA3937_RS08090	0.50	-0.4
1,834,905	+		DDA3937_RS08090	0.50	-1.5
1,834,906	-		DDA3937_RS08090	0.50	-1.2
1,834,927	-		DDA3937_RS08090	0.52	-1.8
1,834,927	-		DDA3937_RS08090	0.52	+0.2
1,834,927	-		DDA3937_RS08090	0.52	+0.8
1,834,998	+		DDA3937_RS08090	0.60	-1.3
1,834,998	+		DDA3937_RS08090	0.60	-2.0
1,834,999	-		DDA3937_RS08090	0.60	-0.6
1,834,999	-		DDA3937_RS08090	0.60	+0.6
1,835,043	+		DDA3937_RS08090	0.64	-0.4
1,835,044	-		DDA3937_RS08090	0.64	-0.5
1,835,050	+		DDA3937_RS08090	0.65	-0.7
1,835,051	-		DDA3937_RS08090	0.65	-0.8
1,835,051	-		DDA3937_RS08090	0.65	-0.6
1,835,191	-		DDA3937_RS08090	0.79	+0.6
1,835,205	+		DDA3937_RS08090	0.81	+0.6
1,835,226	+		DDA3937_RS08090	0.83	+1.6
1,835,227	-		DDA3937_RS08090	0.83	-0.5
1,835,227	-		DDA3937_RS08090	0.83	-0.7
1,835,285	+		DDA3937_RS08090	0.89	+2.9
1,835,285	+		DDA3937_RS08090	0.89	+0.2
1,835,285	+		DDA3937_RS08090	0.89	-0.4
1,835,285	+		DDA3937_RS08090	0.89	+0.3
1,835,285	+		DDA3937_RS08090	0.89	-0.5
1,835,285	+		DDA3937_RS08090	0.89	-0.8
1,835,285	+		DDA3937_RS08090	0.89	-0.4
1,835,286	-		DDA3937_RS08090	0.89	-0.3
1,835,286	-		DDA3937_RS08090	0.89	-1.5
1,835,286	-		DDA3937_RS08090	0.89	-0.6
1,835,289	+		DDA3937_RS08090	0.89	-1.2
1,835,289	+		DDA3937_RS08090	0.89	-0.0
1,835,289	+		DDA3937_RS08090	0.89	-0.8
1,835,289	+		DDA3937_RS08090	0.89	-0.9
1,835,289	+		DDA3937_RS08090	0.89	-0.8
1,835,289	+		DDA3937_RS08090	0.89	-0.2
1,835,290	-		DDA3937_RS08090	0.90	-0.2
1,835,290	-		DDA3937_RS08090	0.90	-0.5
1,835,290	-		DDA3937_RS08090	0.90	-0.8
1,835,308	+				-0.7
1,835,308	+				-1.2
1,835,308	+				-0.7
1,835,308	+				-0.4
1,835,308	+				+0.9
1,835,309	-				-0.2
1,835,389	+				-0.9
1,835,390	-				+1.1
1,835,394	+				+1.2
1,835,394	+				-0.2
1,835,479	-				-0.1
1,835,581	+				-0.7
1,835,581	+				-1.3
1,835,582	-				-0.3
1,835,582	-				-1.9
1,835,582	-				-0.2
1,835,669	+				-0.5
1,835,673	+				+1.1
1,835,702	+				-0.8
1,835,703	-				-2.3
1,835,757	-				-1.0
1,835,810	+				-0.0
1,835,810	+				-0.4
1,836,050	+		DDA3937_RS08095	0.14	-0.5
1,836,051	-		DDA3937_RS08095	0.14	-0.8
1,836,051	-		DDA3937_RS08095	0.14	-0.9
1,836,051	-		DDA3937_RS08095	0.14	-0.8
1,836,089	+		DDA3937_RS08095	0.17	-0.1
1,836,113	+				+0.8
1,836,200	+		DDA3937_RS08095	0.23	-0.9
1,836,200	+		DDA3937_RS08095	0.23	-1.0
1,836,200	+		DDA3937_RS08095	0.23	-0.7
1,836,200	+		DDA3937_RS08095	0.23	+0.2
1,836,200	+		DDA3937_RS08095	0.23	-2.1
1,836,200	+		DDA3937_RS08095	0.23	-0.6
1,836,200	+		DDA3937_RS08095	0.23	+0.1
1,836,201	-		DDA3937_RS08095	0.24	-1.4
1,836,201	-		DDA3937_RS08095	0.24	-0.4
1,836,201	-		DDA3937_RS08095	0.24	-1.5
1,836,201	-		DDA3937_RS08095	0.24	-1.4
1,836,201	-		DDA3937_RS08095	0.24	+0.0
1,836,204	+		DDA3937_RS08095	0.24	-1.0
1,836,204	+		DDA3937_RS08095	0.24	+0.1
1,836,204	+		DDA3937_RS08095	0.24	+0.1
1,836,204	+		DDA3937_RS08095	0.24	-0.4
1,836,204	+		DDA3937_RS08095	0.24	-1.4
1,836,205	-		DDA3937_RS08095	0.24	-0.6
1,836,205	-		DDA3937_RS08095	0.24	-0.2
1,836,205	-		DDA3937_RS08095	0.24	+0.1
1,836,205	-		DDA3937_RS08095	0.24	-0.2
1,836,205	-		DDA3937_RS08095	0.24	+0.9
1,836,205	-		DDA3937_RS08095	0.24	+0.4
1,836,205	-		DDA3937_RS08095	0.24	-0.4
1,836,205	-		DDA3937_RS08095	0.24	-0.2
1,836,216	+		DDA3937_RS08095	0.24	-0.5
1,836,217	-		DDA3937_RS08095	0.25	-0.6
1,836,228	+		DDA3937_RS08095	0.25	-1.5
1,836,228	+		DDA3937_RS08095	0.25	-0.2
1,836,228	+		DDA3937_RS08095	0.25	-0.1
1,836,228	+		DDA3937_RS08095	0.25	-0.9
1,836,228	+		DDA3937_RS08095	0.25	-0.1
1,836,228	+		DDA3937_RS08095	0.25	-0.2
1,836,228	+		DDA3937_RS08095	0.25	+2.4
1,836,229	-		DDA3937_RS08095	0.25	+0.2
1,836,229	-		DDA3937_RS08095	0.25	-0.2
1,836,229	-		DDA3937_RS08095	0.25	-0.6
1,836,229	-		DDA3937_RS08095	0.25	+0.3
1,836,269	+		DDA3937_RS08095	0.28	+0.7
1,836,269	+		DDA3937_RS08095	0.28	-0.4
1,836,270	-		DDA3937_RS08095	0.28	-0.2
1,836,295	-		DDA3937_RS08095	0.29	-0.1
1,836,416	+		DDA3937_RS08095	0.37	+3.6
1,836,438	+		DDA3937_RS08095	0.38	-1.0
1,836,438	+		DDA3937_RS08095	0.38	+0.1
1,836,438	+		DDA3937_RS08095	0.38	-0.5
1,836,439	-		DDA3937_RS08095	0.38	+0.0
1,836,439	-		DDA3937_RS08095	0.38	-1.9
1,836,439	-		DDA3937_RS08095	0.38	+0.3
1,836,439	-		DDA3937_RS08095	0.38	-2.2
1,836,439	-		DDA3937_RS08095	0.38	-0.5
1,836,439	-		DDA3937_RS08095	0.38	+0.9
1,836,439	-		DDA3937_RS08095	0.38	-0.7
1,836,439	-		DDA3937_RS08095	0.38	+0.8
1,836,439	-		DDA3937_RS08095	0.38	+0.8
1,836,439	-		DDA3937_RS08095	0.38	+0.5
1,836,443	-		DDA3937_RS08095	0.38	-0.6
1,836,443	-		DDA3937_RS08095	0.38	+0.3
1,836,537	-		DDA3937_RS08095	0.44	+0.6
1,836,549	+		DDA3937_RS08095	0.45	-1.1
1,836,549	+		DDA3937_RS08095	0.45	-0.4
1,836,549	+		DDA3937_RS08095	0.45	+1.0
1,836,549	+		DDA3937_RS08095	0.45	-0.0
1,836,549	+		DDA3937_RS08095	0.45	-0.4
1,836,550	-		DDA3937_RS08095	0.45	-2.4
1,836,550	-		DDA3937_RS08095	0.45	-0.5
1,836,575	+		DDA3937_RS08095	0.46	-1.0
1,836,627	+		DDA3937_RS08095	0.49	+0.2
1,836,765	+		DDA3937_RS08095	0.58	-0.2
1,836,765	+		DDA3937_RS08095	0.58	-0.9
1,836,765	+		DDA3937_RS08095	0.58	-0.3
1,836,765	+		DDA3937_RS08095	0.58	-0.8
1,836,765	+		DDA3937_RS08095	0.58	-0.5
1,836,765	+		DDA3937_RS08095	0.58	+0.8
1,836,765	+		DDA3937_RS08095	0.58	-0.8
1,836,765	+		DDA3937_RS08095	0.58	+0.1
1,836,765	+		DDA3937_RS08095	0.58	-0.1
1,836,766	-		DDA3937_RS08095	0.58	-0.4
1,836,766	-		DDA3937_RS08095	0.58	+0.9
1,836,766	-		DDA3937_RS08095	0.58	-1.4
1,836,766	-		DDA3937_RS08095	0.58	-1.2
1,836,766	-		DDA3937_RS08095	0.58	-0.2
1,836,766	-		DDA3937_RS08095	0.58	+0.1
1,836,766	-		DDA3937_RS08095	0.58	+0.8
1,836,852	+		DDA3937_RS08095	0.63	-0.6
1,836,863	+		DDA3937_RS08095	0.64	+0.8
1,836,864	-		DDA3937_RS08095	0.64	+0.5
1,836,864	-		DDA3937_RS08095	0.64	+1.0
1,836,864	-		DDA3937_RS08095	0.64	-0.2
1,836,864	-		DDA3937_RS08095	0.64	-1.0
1,836,864	-		DDA3937_RS08095	0.64	+0.1
1,837,164	+		DDA3937_RS08095	0.82	+0.2
1,837,210	-		DDA3937_RS08095	0.84	-1.1
1,837,226	+		DDA3937_RS08095	0.85	+1.1
1,837,227	-		DDA3937_RS08095	0.86	+1.0
1,837,434	+				+1.7
1,837,434	+				-0.7
1,837,465	-				+0.1
1,837,609	+		DDA3937_RS08100	0.17	-0.0
1,837,775	+		DDA3937_RS08100	0.36	+0.6
1,837,916	+		DDA3937_RS08100	0.52	-0.2
1,837,916	+		DDA3937_RS08100	0.52	-0.5
1,837,917	-		DDA3937_RS08100	0.52	-1.2
1,838,082	-		DDA3937_RS08100	0.72	-2.2
1,838,099	+		DDA3937_RS08100	0.74	-0.2
1,838,222	+		DDA3937_RS08100	0.88	-0.2
1,838,240	-				-1.8
1,838,284	+				+0.9
1,838,314	+				-1.1
1,838,315	-				-0.4
1,838,315	-				-0.8
1,838,316	+				-0.1
1,838,317	-				+1.0
1,838,322	+				+1.3
1,838,322	+				-0.7
1,838,323	-				-0.4
1,838,323	-				-0.1
1,838,333	+				+1.4
1,838,333	+				-2.4
1,838,345	+				+0.8
1,838,345	+				-1.5
1,838,345	+				-0.3
1,838,345	+				-1.0
1,838,345	+				-0.0
1,838,345	+				+0.8
1,838,345	+				-0.9
1,838,345	+				+0.4
1,838,345	+				-0.8
1,838,345	+				+1.2
1,838,345	+				+1.4
1,838,345	+				-0.1
1,838,345	+				+2.4
1,838,345	+				-0.2
1,838,345	+				-0.1
1,838,345	+				-0.9
1,838,345	+				+0.7
1,838,345	+				-0.4
1,838,345	+				+0.2
1,838,345	+				-0.2
1,838,345	+				+0.0
1,838,345	+				+0.8
1,838,345	+				+1.2
1,838,345	+				-0.8
1,838,345	+				-2.8
1,838,345	+				-0.7
1,838,345	+				-0.9
1,838,346	-				-2.4
1,838,346	-				-0.0
1,838,346	-				-1.5
1,838,346	-				+0.8
1,838,346	-				+1.2
1,838,346	-				-2.1
1,838,346	-				-2.3
1,838,346	-				+0.8
1,838,346	-				+2.5
1,838,346	-				-1.5
1,838,346	-				-0.4
1,838,346	-				+1.4
1,838,346	-				-1.5
1,838,346	-				-0.6
1,838,346	-				-0.2
1,838,346	-				-1.3
1,838,415	-		DDA3937_RS08105	0.27	-1.5