Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06940 and DDA3937_RS06945 are separated by 272 nucleotides DDA3937_RS06945 and DDA3937_RS06950 are separated by 168 nucleotides DDA3937_RS06950 and DDA3937_RS06955 are separated by 9 nucleotides
DDA3937_RS06940: DDA3937_RS06940 - AMP nucleosidase, at 1,553,087 to 1,554,544
_RS06940
DDA3937_RS06945: DDA3937_RS06945 - Hcp family type VI secretion system effector, at 1,554,817 to 1,555,335
_RS06945
DDA3937_RS06950: DDA3937_RS06950 - type VI secretion system tip protein VgrG, at 1,555,504 to 1,557,540
_RS06950
DDA3937_RS06955: DDA3937_RS06955 - PAAR domain-containing protein, at 1,557,550 to 1,558,920
_RS06955
Position (kb) 1555
1556
1557
1558 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1554.537 kb on + strand at 1554.537 kb on + strand at 1554.538 kb on - strand at 1554.538 kb on - strand at 1554.538 kb on - strand at 1554.538 kb on - strand at 1554.538 kb on - strand at 1554.538 kb on - strand at 1554.628 kb on - strand at 1554.665 kb on + strand at 1554.665 kb on + strand at 1554.666 kb on - strand at 1554.666 kb on - strand at 1554.685 kb on + strand at 1554.688 kb on - strand at 1554.730 kb on + strand at 1554.756 kb on - strand at 1554.785 kb on + strand at 1554.786 kb on - strand at 1554.817 kb on - strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.832 kb on + strand at 1554.864 kb on + strand at 1554.864 kb on + strand at 1554.864 kb on + strand at 1554.865 kb on - strand at 1554.865 kb on - strand at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.907 kb on + strand, within DDA3937_RS06945 at 1554.908 kb on - strand, within DDA3937_RS06945 at 1554.908 kb on - strand, within DDA3937_RS06945 at 1555.061 kb on - strand, within DDA3937_RS06945 at 1555.061 kb on - strand, within DDA3937_RS06945 at 1555.061 kb on - strand, within DDA3937_RS06945 at 1555.228 kb on + strand, within DDA3937_RS06945 at 1555.228 kb on + strand, within DDA3937_RS06945 at 1555.333 kb on + strand at 1555.420 kb on + strand at 1555.420 kb on + strand at 1555.421 kb on - strand at 1555.468 kb on + strand at 1555.469 kb on - strand at 1555.472 kb on + strand at 1555.473 kb on - strand at 1555.473 kb on - strand at 1555.530 kb on + strand at 1555.696 kb on + strand at 1555.939 kb on + strand, within DDA3937_RS06950 at 1555.940 kb on - strand, within DDA3937_RS06950 at 1556.009 kb on - strand, within DDA3937_RS06950 at 1556.009 kb on - strand, within DDA3937_RS06950 at 1556.009 kb on - strand, within DDA3937_RS06950 at 1556.009 kb on - strand, within DDA3937_RS06950 at 1556.128 kb on + strand, within DDA3937_RS06950 at 1556.128 kb on + strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.129 kb on - strand, within DDA3937_RS06950 at 1556.188 kb on + strand, within DDA3937_RS06950 at 1556.188 kb on + strand, within DDA3937_RS06950 at 1556.189 kb on - strand, within DDA3937_RS06950 at 1556.189 kb on - strand at 1556.366 kb on + strand, within DDA3937_RS06950 at 1556.366 kb on + strand, within DDA3937_RS06950 at 1556.585 kb on - strand, within DDA3937_RS06950 at 1556.585 kb on - strand, within DDA3937_RS06950 at 1556.647 kb on + strand, within DDA3937_RS06950 at 1556.877 kb on + strand, within DDA3937_RS06950 at 1556.878 kb on + strand, within DDA3937_RS06950 at 1556.878 kb on + strand, within DDA3937_RS06950 at 1556.878 kb on + strand, within DDA3937_RS06950 at 1556.878 kb on + strand, within DDA3937_RS06950 at 1556.879 kb on - strand, within DDA3937_RS06950 at 1556.907 kb on + strand, within DDA3937_RS06950 at 1556.907 kb on + strand, within DDA3937_RS06950 at 1556.907 kb on + strand, within DDA3937_RS06950 at 1556.907 kb on + strand, within DDA3937_RS06950 at 1556.908 kb on - strand, within DDA3937_RS06950 at 1556.908 kb on - strand, within DDA3937_RS06950 at 1556.987 kb on - strand, within DDA3937_RS06950 at 1557.102 kb on + strand, within DDA3937_RS06950 at 1557.234 kb on + strand, within DDA3937_RS06950 at 1557.235 kb on - strand, within DDA3937_RS06950 at 1557.235 kb on - strand, within DDA3937_RS06950 at 1557.255 kb on + strand, within DDA3937_RS06950 at 1557.256 kb on - strand, within DDA3937_RS06950 at 1557.322 kb on + strand, within DDA3937_RS06950 at 1557.323 kb on - strand, within DDA3937_RS06950 at 1557.369 kb on + strand at 1557.639 kb on + strand at 1557.706 kb on - strand, within DDA3937_RS06955 at 1557.768 kb on + strand, within DDA3937_RS06955 at 1557.841 kb on - strand, within DDA3937_RS06955 at 1557.857 kb on - strand, within DDA3937_RS06955 at 1557.999 kb on - strand, within DDA3937_RS06955 at 1558.001 kb on + strand, within DDA3937_RS06955 at 1558.001 kb on + strand, within DDA3937_RS06955 at 1558.001 kb on + strand, within DDA3937_RS06955 at 1558.002 kb on - strand, within DDA3937_RS06955 at 1558.002 kb on - strand, within DDA3937_RS06955 at 1558.002 kb on - strand, within DDA3937_RS06955 at 1558.008 kb on + strand, within DDA3937_RS06955 at 1558.009 kb on - strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.107 kb on + strand, within DDA3937_RS06955 at 1558.108 kb on - strand, within DDA3937_RS06955 at 1558.132 kb on + strand, within DDA3937_RS06955 at 1558.132 kb on + strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.133 kb on - strand, within DDA3937_RS06955 at 1558.161 kb on + strand, within DDA3937_RS06955 at 1558.161 kb on + strand at 1558.161 kb on + strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.162 kb on - strand, within DDA3937_RS06955 at 1558.167 kb on - strand, within DDA3937_RS06955 at 1558.212 kb on + strand, within DDA3937_RS06955 at 1558.213 kb on - strand, within DDA3937_RS06955 at 1558.213 kb on - strand, within DDA3937_RS06955 at 1558.214 kb on + strand, within DDA3937_RS06955 at 1558.214 kb on + strand, within DDA3937_RS06955 at 1558.215 kb on - strand, within DDA3937_RS06955 at 1558.233 kb on + strand, within DDA3937_RS06955 at 1558.239 kb on + strand, within DDA3937_RS06955 at 1558.248 kb on + strand, within DDA3937_RS06955 at 1558.248 kb on + strand, within DDA3937_RS06955 at 1558.280 kb on + strand, within DDA3937_RS06955 at 1558.284 kb on + strand, within DDA3937_RS06955 at 1558.285 kb on - strand, within DDA3937_RS06955 at 1558.285 kb on - strand, within DDA3937_RS06955 at 1558.293 kb on + strand, within DDA3937_RS06955 at 1558.293 kb on + strand, within DDA3937_RS06955 at 1558.293 kb on + strand, within DDA3937_RS06955 at 1558.294 kb on - strand at 1558.294 kb on - strand, within DDA3937_RS06955 at 1558.294 kb on - strand, within DDA3937_RS06955 at 1558.294 kb on - strand, within DDA3937_RS06955 at 1558.299 kb on + strand, within DDA3937_RS06955 at 1558.321 kb on - strand at 1558.332 kb on + strand, within DDA3937_RS06955 at 1558.340 kb on + strand, within DDA3937_RS06955 at 1558.340 kb on + strand, within DDA3937_RS06955 at 1558.350 kb on + strand, within DDA3937_RS06955 at 1558.362 kb on + strand, within DDA3937_RS06955 at 1558.382 kb on + strand, within DDA3937_RS06955 at 1558.382 kb on + strand, within DDA3937_RS06955 at 1558.402 kb on + strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.403 kb on - strand, within DDA3937_RS06955 at 1558.404 kb on + strand, within DDA3937_RS06955 at 1558.445 kb on + strand, within DDA3937_RS06955 at 1558.445 kb on + strand, within DDA3937_RS06955 at 1558.445 kb on + strand, within DDA3937_RS06955 at 1558.446 kb on - strand, within DDA3937_RS06955 at 1558.461 kb on + strand, within DDA3937_RS06955 at 1558.461 kb on + strand, within DDA3937_RS06955 at 1558.462 kb on - strand, within DDA3937_RS06955 at 1558.462 kb on - strand, within DDA3937_RS06955 at 1558.520 kb on + strand, within DDA3937_RS06955 at 1558.520 kb on + strand, within DDA3937_RS06955 at 1558.528 kb on + strand, within DDA3937_RS06955 at 1558.529 kb on - strand at 1558.531 kb on - strand, within DDA3937_RS06955 at 1558.531 kb on - strand, within DDA3937_RS06955 at 1558.536 kb on + strand, within DDA3937_RS06955
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,554,537 + +0.1 1,554,537 + -0.5 1,554,538 - -0.4 1,554,538 - -0.7 1,554,538 - +1.4 1,554,538 - -0.2 1,554,538 - +1.1 1,554,538 - -0.0 1,554,628 - +0.1 1,554,665 + -1.5 1,554,665 + -0.4 1,554,666 - -0.1 1,554,666 - -0.1 1,554,685 + -0.1 1,554,688 - -0.3 1,554,730 + -0.6 1,554,756 - -1.0 1,554,785 + -0.0 1,554,786 - -1.0 1,554,817 - +0.0 1,554,832 + -0.0 1,554,832 + +0.1 1,554,832 + -0.4 1,554,832 + +0.4 1,554,832 + -1.0 1,554,832 + -0.5 1,554,832 + -1.2 1,554,832 + -0.7 1,554,832 + -1.3 1,554,832 + +0.1 1,554,832 + -0.1 1,554,864 + -0.7 1,554,864 + +0.1 1,554,864 + -0.1 1,554,865 - -1.5 1,554,865 - -0.1 1,554,907 + DDA3937_RS06945 0.17 +1.1 1,554,907 + DDA3937_RS06945 0.17 +1.4 1,554,907 + DDA3937_RS06945 0.17 -1.6 1,554,907 + DDA3937_RS06945 0.17 -2.0 1,554,907 + DDA3937_RS06945 0.17 +0.1 1,554,907 + DDA3937_RS06945 0.17 -0.1 1,554,907 + DDA3937_RS06945 0.17 +0.1 1,554,907 + DDA3937_RS06945 0.17 -1.7 1,554,908 - DDA3937_RS06945 0.18 -1.1 1,554,908 - DDA3937_RS06945 0.18 -0.7 1,555,061 - DDA3937_RS06945 0.47 -0.7 1,555,061 - DDA3937_RS06945 0.47 +1.4 1,555,061 - DDA3937_RS06945 0.47 -1.6 1,555,228 + DDA3937_RS06945 0.79 -0.4 1,555,228 + DDA3937_RS06945 0.79 -1.4 1,555,333 + -0.5 1,555,420 + +0.7 1,555,420 + -0.0 1,555,421 - -0.6 1,555,468 + -0.1 1,555,469 - -0.3 1,555,472 + +0.9 1,555,473 - -2.6 1,555,473 - +0.1 1,555,530 + -0.1 1,555,696 + -2.3 1,555,939 + DDA3937_RS06950 0.21 -0.9 1,555,940 - DDA3937_RS06950 0.21 -0.4 1,556,009 - DDA3937_RS06950 0.25 -0.9 1,556,009 - DDA3937_RS06950 0.25 -0.1 1,556,009 - DDA3937_RS06950 0.25 -2.0 1,556,009 - DDA3937_RS06950 0.25 -0.9 1,556,128 + DDA3937_RS06950 0.31 -2.0 1,556,128 + DDA3937_RS06950 0.31 +1.2 1,556,129 - DDA3937_RS06950 0.31 +0.5 1,556,129 - DDA3937_RS06950 0.31 +0.3 1,556,129 - DDA3937_RS06950 0.31 -0.7 1,556,129 - DDA3937_RS06950 0.31 +0.3 1,556,129 - DDA3937_RS06950 0.31 -0.4 1,556,129 - DDA3937_RS06950 0.31 +1.2 1,556,129 - DDA3937_RS06950 0.31 -1.0 1,556,129 - DDA3937_RS06950 0.31 -1.4 1,556,129 - DDA3937_RS06950 0.31 +0.1 1,556,129 - DDA3937_RS06950 0.31 +0.2 1,556,129 - DDA3937_RS06950 0.31 +0.2 1,556,129 - DDA3937_RS06950 0.31 -0.3 1,556,129 - DDA3937_RS06950 0.31 +0.9 1,556,129 - DDA3937_RS06950 0.31 -0.9 1,556,129 - DDA3937_RS06950 0.31 -0.8 1,556,129 - DDA3937_RS06950 0.31 +4.0 1,556,188 + DDA3937_RS06950 0.34 +0.6 1,556,188 + DDA3937_RS06950 0.34 -0.5 1,556,189 - DDA3937_RS06950 0.34 -0.4 1,556,189 - -1.5 1,556,366 + DDA3937_RS06950 0.42 -1.1 1,556,366 + DDA3937_RS06950 0.42 -1.5 1,556,585 - DDA3937_RS06950 0.53 -0.9 1,556,585 - DDA3937_RS06950 0.53 +0.9 1,556,647 + DDA3937_RS06950 0.56 -0.1 1,556,877 + DDA3937_RS06950 0.67 -2.6 1,556,878 + DDA3937_RS06950 0.67 -0.9 1,556,878 + DDA3937_RS06950 0.67 -0.3 1,556,878 + DDA3937_RS06950 0.67 -0.4 1,556,878 + DDA3937_RS06950 0.67 +0.1 1,556,879 - DDA3937_RS06950 0.68 -0.3 1,556,907 + DDA3937_RS06950 0.69 -0.9 1,556,907 + DDA3937_RS06950 0.69 -0.4 1,556,907 + DDA3937_RS06950 0.69 +2.4 1,556,907 + DDA3937_RS06950 0.69 -0.2 1,556,908 - DDA3937_RS06950 0.69 -1.3 1,556,908 - DDA3937_RS06950 0.69 -1.0 1,556,987 - DDA3937_RS06950 0.73 -0.1 1,557,102 + DDA3937_RS06950 0.78 +1.7 1,557,234 + DDA3937_RS06950 0.85 +0.7 1,557,235 - DDA3937_RS06950 0.85 -0.5 1,557,235 - DDA3937_RS06950 0.85 -0.3 1,557,255 + DDA3937_RS06950 0.86 +0.2 1,557,256 - DDA3937_RS06950 0.86 -0.7 1,557,322 + DDA3937_RS06950 0.89 +1.0 1,557,323 - DDA3937_RS06950 0.89 +1.1 1,557,369 + -1.1 1,557,639 + +2.6 1,557,706 - DDA3937_RS06955 0.11 -0.4 1,557,768 + DDA3937_RS06955 0.16 -1.7 1,557,841 - DDA3937_RS06955 0.21 -0.4 1,557,857 - DDA3937_RS06955 0.22 -1.1 1,557,999 - DDA3937_RS06955 0.33 -2.7 1,558,001 + DDA3937_RS06955 0.33 -0.1 1,558,001 + DDA3937_RS06955 0.33 -0.1 1,558,001 + DDA3937_RS06955 0.33 +0.6 1,558,002 - DDA3937_RS06955 0.33 -2.6 1,558,002 - DDA3937_RS06955 0.33 -1.0 1,558,002 - DDA3937_RS06955 0.33 -0.7 1,558,008 + DDA3937_RS06955 0.33 +2.2 1,558,009 - DDA3937_RS06955 0.33 +0.4 1,558,107 + DDA3937_RS06955 0.41 +0.3 1,558,107 + DDA3937_RS06955 0.41 +0.7 1,558,107 + DDA3937_RS06955 0.41 -0.3 1,558,107 + DDA3937_RS06955 0.41 -1.6 1,558,108 - DDA3937_RS06955 0.41 +0.6 1,558,132 + DDA3937_RS06955 0.42 -2.1 1,558,132 + DDA3937_RS06955 0.42 -0.2 1,558,133 - DDA3937_RS06955 0.43 -1.5 1,558,133 - DDA3937_RS06955 0.43 +0.5 1,558,133 - DDA3937_RS06955 0.43 -1.4 1,558,133 - DDA3937_RS06955 0.43 -0.8 1,558,161 + DDA3937_RS06955 0.45 -0.6 1,558,161 + +0.9 1,558,161 + DDA3937_RS06955 0.45 -1.7 1,558,162 - DDA3937_RS06955 0.45 -1.0 1,558,162 - DDA3937_RS06955 0.45 -0.5 1,558,162 - DDA3937_RS06955 0.45 -1.7 1,558,162 - DDA3937_RS06955 0.45 -0.7 1,558,162 - DDA3937_RS06955 0.45 -1.6 1,558,162 - DDA3937_RS06955 0.45 -1.0 1,558,167 - DDA3937_RS06955 0.45 -0.3 1,558,212 + DDA3937_RS06955 0.48 +0.0 1,558,213 - DDA3937_RS06955 0.48 -0.5 1,558,213 - DDA3937_RS06955 0.48 +0.0 1,558,214 + DDA3937_RS06955 0.48 -1.1 1,558,214 + DDA3937_RS06955 0.48 +0.2 1,558,215 - DDA3937_RS06955 0.49 -0.7 1,558,233 + DDA3937_RS06955 0.50 -0.0 1,558,239 + DDA3937_RS06955 0.50 -0.6 1,558,248 + DDA3937_RS06955 0.51 +0.0 1,558,248 + DDA3937_RS06955 0.51 -0.9 1,558,280 + DDA3937_RS06955 0.53 -0.5 1,558,284 + DDA3937_RS06955 0.54 -0.1 1,558,285 - DDA3937_RS06955 0.54 -0.6 1,558,285 - DDA3937_RS06955 0.54 +0.3 1,558,293 + DDA3937_RS06955 0.54 -2.0 1,558,293 + DDA3937_RS06955 0.54 +0.2 1,558,293 + DDA3937_RS06955 0.54 -0.7 1,558,294 - +2.7 1,558,294 - DDA3937_RS06955 0.54 +2.3 1,558,294 - DDA3937_RS06955 0.54 -0.4 1,558,294 - DDA3937_RS06955 0.54 -1.3 1,558,299 + DDA3937_RS06955 0.55 +1.6 1,558,321 - -1.1 1,558,332 + DDA3937_RS06955 0.57 -1.1 1,558,340 + DDA3937_RS06955 0.58 -0.5 1,558,340 + DDA3937_RS06955 0.58 -0.0 1,558,350 + DDA3937_RS06955 0.58 +0.2 1,558,362 + DDA3937_RS06955 0.59 +0.2 1,558,382 + DDA3937_RS06955 0.61 +0.1 1,558,382 + DDA3937_RS06955 0.61 +0.2 1,558,402 + DDA3937_RS06955 0.62 -1.6 1,558,403 - DDA3937_RS06955 0.62 -1.1 1,558,403 - DDA3937_RS06955 0.62 -0.1 1,558,403 - DDA3937_RS06955 0.62 -0.7 1,558,403 - DDA3937_RS06955 0.62 -2.3 1,558,404 + DDA3937_RS06955 0.62 +0.4 1,558,445 + DDA3937_RS06955 0.65 +0.4 1,558,445 + DDA3937_RS06955 0.65 -0.3 1,558,445 + DDA3937_RS06955 0.65 +1.7 1,558,446 - DDA3937_RS06955 0.65 +1.1 1,558,461 + DDA3937_RS06955 0.66 -0.5 1,558,461 + DDA3937_RS06955 0.66 -2.0 1,558,462 - DDA3937_RS06955 0.67 -1.6 1,558,462 - DDA3937_RS06955 0.67 -1.7 1,558,520 + DDA3937_RS06955 0.71 -0.7 1,558,520 + DDA3937_RS06955 0.71 +0.3 1,558,528 + DDA3937_RS06955 0.71 +1.3 1,558,529 - -1.5 1,558,531 - DDA3937_RS06955 0.72 +0.3 1,558,531 - DDA3937_RS06955 0.72 +0.5 1,558,536 + DDA3937_RS06955 0.72 -0.1
Or see this region's nucleotide sequence