Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06805

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,522,076	+		DDA3937_RS06800	0.27	+0.1
1,522,076	+		DDA3937_RS06800	0.27	-1.9
1,522,076	+		DDA3937_RS06800	0.27	+0.1
1,522,076	+		DDA3937_RS06800	0.27	-0.8
1,522,076	+		DDA3937_RS06800	0.27	-0.3
1,522,076	+		DDA3937_RS06800	0.27	-1.1
1,522,077	-		DDA3937_RS06800	0.27	-0.5
1,522,077	-		DDA3937_RS06800	0.27	-1.7
1,522,077	-		DDA3937_RS06800	0.27	-2.6
1,522,077	-		DDA3937_RS06800	0.27	-0.3
1,522,077	-		DDA3937_RS06800	0.27	+0.2
1,522,117	+		DDA3937_RS06800	0.31	-0.2
1,522,117	+		DDA3937_RS06800	0.31	+0.0
1,522,228	-		DDA3937_RS06800	0.43	-0.7
1,522,228	-		DDA3937_RS06800	0.43	+1.5
1,522,228	-		DDA3937_RS06800	0.43	-0.7
1,522,355	+		DDA3937_RS06800	0.55	-0.5
1,522,355	+		DDA3937_RS06800	0.55	-0.1
1,522,355	+		DDA3937_RS06800	0.55	+0.1
1,522,355	+		DDA3937_RS06800	0.55	-0.7
1,522,355	+		DDA3937_RS06800	0.55	+0.1
1,522,355	+		DDA3937_RS06800	0.55	-2.6
1,522,356	-		DDA3937_RS06800	0.55	+0.1
1,522,356	-		DDA3937_RS06800	0.55	-0.2
1,522,356	-		DDA3937_RS06800	0.55	-0.3
1,522,356	-		DDA3937_RS06800	0.55	+1.3
1,522,493	+		DDA3937_RS06800	0.69	-0.1
1,522,611	+		DDA3937_RS06800	0.81	+0.2
1,522,612	-		DDA3937_RS06800	0.81	-0.2
1,522,612	-		DDA3937_RS06800	0.81	-0.9
1,522,680	+		DDA3937_RS06800	0.88	+2.5
1,522,680	+		DDA3937_RS06800	0.88	+0.1
1,522,717	+				+1.7
1,522,807	+				+1.1
1,522,808	-				-0.3
1,522,808	-				+0.9
1,522,808	-				+1.7
1,522,812	-				-1.1
1,522,826	+				-0.4
1,522,827	-				-0.7
1,522,827	-				+0.6
1,522,827	-				-1.7
1,522,827	-				+0.1
1,522,830	+				-0.4
1,522,830	+				-1.0
1,522,830	+				-2.0
1,522,830	+				-0.5
1,522,830	+				-0.2
1,522,830	+				-0.1
1,522,830	+				-0.4
1,522,830	+				-0.3
1,522,830	+				-0.8
1,522,830	+				+0.9
1,522,830	+				-0.4
1,522,830	+				-0.1
1,522,830	+				-1.9
1,522,831	-				-0.9
1,522,831	-				-0.7
1,522,831	-				-1.5
1,522,831	-				-1.0
1,522,831	-				-0.6
1,522,831	-				+0.5
1,522,831	-				-0.5
1,522,831	-				-1.0
1,522,847	+				+0.6
1,522,847	+				-0.5
1,522,847	+				-0.4
1,522,847	+				+0.5
1,522,848	-				-2.1
1,522,848	-				-0.7
1,522,865	+				+0.5
1,522,866	-				-0.1
1,522,915	+				+0.3
1,522,915	+				+0.5
1,522,915	+				-0.4
1,522,915	+				-0.3
1,522,915	+				-0.6
1,522,916	-				-1.2
1,522,916	-				+0.4
1,522,920	-				-0.4
1,522,920	-				-1.9
1,522,920	-				-2.3
1,522,920	-				+0.8
1,522,933	+				-2.8
1,522,934	-				-1.7
1,522,942	+				-0.5
1,522,995	+				-0.5
1,523,099	+				-1.6
1,523,099	+				-1.1
1,523,100	-				-2.3
1,523,181	+		DDA3937_RS06805	0.12	-2.3
1,523,261	+		DDA3937_RS06805	0.17	-0.7
1,523,286	+		DDA3937_RS06805	0.19	-1.2
1,523,286	+		DDA3937_RS06805	0.19	-1.7
1,523,286	+		DDA3937_RS06805	0.19	-1.5
1,523,331	+		DDA3937_RS06805	0.22	-1.0
1,523,331	+		DDA3937_RS06805	0.22	-1.5
1,523,331	+		DDA3937_RS06805	0.22	-1.3
1,523,332	-		DDA3937_RS06805	0.22	-2.1
1,523,332	-		DDA3937_RS06805	0.22	-1.4
1,523,332	-		DDA3937_RS06805	0.22	-1.5
1,523,332	-		DDA3937_RS06805	0.22	-0.8
1,523,332	-		DDA3937_RS06805	0.22	-1.7
1,523,332	-		DDA3937_RS06805	0.22	-1.2
1,523,333	+		DDA3937_RS06805	0.22	-0.3
1,523,334	-		DDA3937_RS06805	0.22	-0.7
1,523,339	+		DDA3937_RS06805	0.23	-1.1
1,523,339	+		DDA3937_RS06805	0.23	-0.1
1,523,339	+		DDA3937_RS06805	0.23	-1.4
1,523,340	-		DDA3937_RS06805	0.23	-1.5
1,523,340	-		DDA3937_RS06805	0.23	+0.0
1,523,340	-		DDA3937_RS06805	0.23	-1.9
1,523,342	+		DDA3937_RS06805	0.23	-1.9
1,523,343	-		DDA3937_RS06805	0.23	-2.5
1,523,438	+		DDA3937_RS06805	0.30	-2.6
1,523,463	+		DDA3937_RS06805	0.32	-1.9
1,523,463	+		DDA3937_RS06805	0.32	-2.9
1,523,464	-		DDA3937_RS06805	0.32	-0.7
1,523,529	+		DDA3937_RS06805	0.36	+0.4
1,523,529	+		DDA3937_RS06805	0.36	-0.7
1,523,529	+		DDA3937_RS06805	0.36	-1.3
1,523,529	+		DDA3937_RS06805	0.36	-1.3
1,523,529	+		DDA3937_RS06805	0.36	+0.3
1,523,529	+		DDA3937_RS06805	0.36	-0.5
1,523,529	+		DDA3937_RS06805	0.36	-2.1
1,523,529	+		DDA3937_RS06805	0.36	-2.7
1,523,529	+		DDA3937_RS06805	0.36	-0.3
1,523,530	-		DDA3937_RS06805	0.36	+0.0
1,523,530	-		DDA3937_RS06805	0.36	-0.7
1,523,530	-		DDA3937_RS06805	0.36	+0.9
1,523,530	-		DDA3937_RS06805	0.36	-1.8
1,523,530	-		DDA3937_RS06805	0.36	-1.2
1,523,530	-		DDA3937_RS06805	0.36	-1.7
1,523,530	-		DDA3937_RS06805	0.36	-1.2
1,523,530	-		DDA3937_RS06805	0.36	-2.4
1,523,530	-				+0.9
1,523,530	-		DDA3937_RS06805	0.36	-2.8
1,523,531	+		DDA3937_RS06805	0.36	-0.5
1,523,556	+		DDA3937_RS06805	0.38	-0.1
1,523,556	+		DDA3937_RS06805	0.38	+0.3
1,523,556	+		DDA3937_RS06805	0.38	-1.7
1,523,557	-		DDA3937_RS06805	0.38	-1.1
1,523,557	-		DDA3937_RS06805	0.38	-2.6
1,523,557	-		DDA3937_RS06805	0.38	+0.9
1,523,616	+		DDA3937_RS06805	0.42	-2.7
1,523,617	-		DDA3937_RS06805	0.43	-1.4
1,523,699	+				-0.5
1,523,699	+		DDA3937_RS06805	0.48	-1.7
1,523,700	-		DDA3937_RS06805	0.48	-0.8
1,523,700	-		DDA3937_RS06805	0.48	-0.8
1,523,703	+		DDA3937_RS06805	0.49	-2.7
1,523,703	+		DDA3937_RS06805	0.49	-0.7
1,523,703	+		DDA3937_RS06805	0.49	-1.0
1,523,703	+		DDA3937_RS06805	0.49	-1.4
1,523,703	+		DDA3937_RS06805	0.49	-2.6
1,523,703	+		DDA3937_RS06805	0.49	-0.9
1,523,703	+		DDA3937_RS06805	0.49	-1.1
1,523,703	+		DDA3937_RS06805	0.49	-1.5
1,523,703	+		DDA3937_RS06805	0.49	-3.0
1,523,704	-		DDA3937_RS06805	0.49	-0.5
1,523,753	+		DDA3937_RS06805	0.52	-1.1
1,523,754	-		DDA3937_RS06805	0.52	-0.5
1,523,757	+		DDA3937_RS06805	0.52	-0.5
1,523,758	-		DDA3937_RS06805	0.53	-1.6
1,523,758	-		DDA3937_RS06805	0.53	-1.8
1,523,855	+		DDA3937_RS06805	0.59	-0.0
1,523,878	-		DDA3937_RS06805	0.61	-1.9
1,523,878	-		DDA3937_RS06805	0.61	-1.9
1,523,994	+		DDA3937_RS06805	0.69	-1.9
1,523,994	+		DDA3937_RS06805	0.69	-2.5
1,523,995	-		DDA3937_RS06805	0.69	-1.3
1,524,015	+		DDA3937_RS06805	0.71	-0.4
1,524,015	+		DDA3937_RS06805	0.71	-0.7
1,524,015	+		DDA3937_RS06805	0.71	-0.7
1,524,015	+		DDA3937_RS06805	0.71	-1.1
1,524,075	+		DDA3937_RS06805	0.75	-0.8
1,524,076	-		DDA3937_RS06805	0.75	-1.6
1,524,247	-		DDA3937_RS06805	0.87	-0.4
1,524,247	-		DDA3937_RS06805	0.87	-1.5
1,524,297	+				-1.9
1,524,301	-				-1.9
1,524,301	-				-0.1
1,524,301	-				-0.9
1,524,301	-				+0.3
1,524,301	-				+0.9
1,524,301	-				-2.4
1,524,301	-				-0.7
1,524,309	+				-0.6
1,524,371	+				-2.3
1,524,372	-				-0.3
1,524,372	-				-0.1
1,524,372	-				-1.1
1,524,375	+				-0.7
1,524,375	+				-0.9
1,524,375	+				-1.4
1,524,376	-				-1.9
1,524,376	-				-1.1
1,524,376	-				-0.9
1,524,376	-				-1.7
1,524,376	-				-1.6
1,524,377	+				-2.5
1,524,378	-				-0.1
1,524,384	-				-1.1
1,524,384	-				-1.1
1,524,390	-				-1.8
1,524,401	-				-1.3
1,524,401	-				-0.5
1,524,401	-				-1.8
1,524,423	+				-1.2
1,524,426	+				-1.5
1,524,427	-				-0.9
1,524,498	+				+0.2
1,524,506	-				+0.0
1,524,563	+				+0.2
1,524,571	+				-1.2
1,524,571	+				+0.6
1,524,571	+				-1.9
1,524,572	-				-1.1
1,524,620	-				-1.7
1,524,679	-				-0.1
1,524,739	+				-0.6
1,524,741	+				-0.5
1,524,741	+				+0.6
1,524,742	-				+2.3
1,524,789	+				+0.0
1,524,790	-				-1.3
1,524,805	+				+0.0
1,524,806	-				+1.5
1,524,932	-				-0.1
1,524,949	-				-0.2
1,525,100	+		DDA3937_RS06810	0.60	+1.0
1,525,100	+		DDA3937_RS06810	0.60	+0.5
1,525,303	+				-0.3
1,525,304	-				-0.6
1,525,304	-				+0.1