Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06025

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,356,672	+				-0.0
1,356,672	+				-1.0
1,356,731	-				-0.1
1,356,824	+				+0.1
1,356,824	+				-0.7
1,356,825	-				-0.3
1,356,874	+				-0.9
1,356,875	-				+0.7
1,356,919	+				+0.4
1,356,928	+				-0.0
1,356,928	+				-0.5
1,356,928	+				-2.2
1,356,929	-				-1.6
1,356,929	-				+1.0
1,356,929	-				+0.1
1,356,929	-				+0.1
1,356,932	-				-0.7
1,356,942	+				+0.5
1,356,942	+				-0.0
1,356,942	+				-0.8
1,356,942	+				+0.2
1,356,943	-				-1.4
1,356,949	-				-0.5
1,357,053	+		DDA3937_RS06020	0.17	+0.6
1,357,053	+		DDA3937_RS06020	0.17	-1.9
1,357,054	-		DDA3937_RS06020	0.17	-0.7
1,357,062	+		DDA3937_RS06020	0.18	+0.3
1,357,062	+		DDA3937_RS06020	0.18	-0.3
1,357,062	+		DDA3937_RS06020	0.18	+0.1
1,357,063	-		DDA3937_RS06020	0.18	+1.6
1,357,063	-		DDA3937_RS06020	0.18	+0.6
1,357,184	-		DDA3937_RS06020	0.37	-0.0
1,357,321	-		DDA3937_RS06020	0.59	+0.1
1,357,321	-		DDA3937_RS06020	0.59	-1.8
1,357,321	-		DDA3937_RS06020	0.59	-0.9
1,357,337	+		DDA3937_RS06020	0.61	-0.2
1,357,337	+		DDA3937_RS06020	0.61	-0.4
1,357,337	+		DDA3937_RS06020	0.61	+0.4
1,357,338	-		DDA3937_RS06020	0.61	-0.9
1,357,338	-		DDA3937_RS06020	0.61	-1.0
1,357,338	-		DDA3937_RS06020	0.61	-0.8
1,357,338	-		DDA3937_RS06020	0.61	-0.9
1,357,402	-		DDA3937_RS06020	0.71	-0.0
1,357,484	+		DDA3937_RS06020	0.84	-0.6
1,357,492	+		DDA3937_RS06020	0.85	+0.4
1,357,493	-		DDA3937_RS06020	0.85	-1.5
1,357,593	+				+0.4
1,357,593	+				-0.2
1,357,728	+		DDA3937_RS06025	0.14	-2.5
1,357,729	-		DDA3937_RS06025	0.14	-2.7
1,357,739	+		DDA3937_RS06025	0.15	-0.3
1,357,843	+		DDA3937_RS06025	0.25	-1.1
1,357,897	+		DDA3937_RS06025	0.30	-2.7
1,357,898	-		DDA3937_RS06025	0.30	-1.7
1,357,898	-		DDA3937_RS06025	0.30	-0.2
1,357,898	-		DDA3937_RS06025	0.30	-2.0
1,357,898	-		DDA3937_RS06025	0.30	-3.5
1,357,898	-		DDA3937_RS06025	0.30	-1.8
1,357,898	-		DDA3937_RS06025	0.30	-2.9
1,357,937	+		DDA3937_RS06025	0.34	-1.5
1,357,937	+		DDA3937_RS06025	0.34	-0.6
1,358,162	+		DDA3937_RS06025	0.56	-2.9
1,358,163	-		DDA3937_RS06025	0.56	-0.0
1,358,177	+		DDA3937_RS06025	0.57	-2.0
1,358,177	+		DDA3937_RS06025	0.57	-2.7
1,358,177	+		DDA3937_RS06025	0.57	-3.3
1,358,177	+		DDA3937_RS06025	0.57	-1.0
1,358,177	+		DDA3937_RS06025	0.57	+0.7
1,358,178	-		DDA3937_RS06025	0.57	-3.4
1,358,297	+		DDA3937_RS06025	0.69	-1.4
1,358,300	+		DDA3937_RS06025	0.69	-2.2
1,358,300	+		DDA3937_RS06025	0.69	-0.9
1,358,332	+		DDA3937_RS06025	0.72	-1.6
1,358,332	+		DDA3937_RS06025	0.72	-1.9
1,358,333	-		DDA3937_RS06025	0.72	-1.9
1,358,333	-		DDA3937_RS06025	0.72	-1.4
1,358,379	+		DDA3937_RS06025	0.76	-3.1
1,358,380	-		DDA3937_RS06025	0.77	-0.4
1,358,536	+				-2.2
1,358,537	-				-1.2
1,358,537	-				-3.1
1,358,547	+				-2.3
1,358,548	-				-3.2
1,358,555	-				-1.5
1,358,555	-				-2.2
1,358,555	-				-0.0
1,358,555	-				-0.6
1,358,555	-				-2.5
1,358,578	-				-0.0
1,358,578	-				-1.8
1,358,595	+				-0.8
1,358,596	-				-3.2
1,358,596	-				+2.0
1,358,597	+				-2.5
1,358,597	+				-1.2
1,358,597	+				-1.5
1,358,597	+				-1.9
1,358,597	+				-1.2
1,358,598	-				-1.2
1,358,598	-				-1.2
1,358,598	-				-2.6
1,358,598	-				-1.9
1,358,598	-				+0.5
1,358,598	-				-1.8
1,358,645	-				-1.3
1,358,678	+				-1.8
1,358,679	-				-0.9
1,358,721	-				+0.4
1,358,721	-				+0.5
1,358,764	+				-0.1
1,358,765	-				+0.2
1,358,765	-				-2.9
1,358,765	-				-0.3
1,358,845	-				+1.0
1,358,845	-				-1.7
1,358,846	+				-1.6
1,358,846	+				-0.3
1,358,846	+				+0.8
1,358,846	+				-0.8
1,358,846	+				-0.4
1,358,847	-				-3.1
1,358,847	-				-0.9
1,358,847	-				+0.1
1,358,869	+				-0.5
1,358,869	+				+0.1
1,358,869	+				-0.1
1,358,869	+				+0.3
1,358,870	-				-0.0
1,358,933	+				-0.0
1,358,933	+				+0.5
1,358,934	-				-0.5
1,358,934	-				-0.5
1,358,934	-				-1.7
1,358,934	-				-1.2
1,358,934	-				-1.0
1,358,966	+		DDA3937_RS06030	0.11	+3.0
1,359,015	+		DDA3937_RS06030	0.19	+1.0
1,359,015	+		DDA3937_RS06030	0.19	-0.6
1,359,015	+		DDA3937_RS06030	0.19	-0.1
1,359,016	-		DDA3937_RS06030	0.19	-2.0
1,359,016	-		DDA3937_RS06030	0.19	-0.4
1,359,167	-		DDA3937_RS06030	0.43	+0.6
1,359,198	+		DDA3937_RS06030	0.48	-1.0
1,359,198	+		DDA3937_RS06030	0.48	-2.1
1,359,199	-		DDA3937_RS06030	0.48	+0.4
1,359,231	+		DDA3937_RS06030	0.54	-0.9
1,359,232	-		DDA3937_RS06030	0.54	-1.9
1,359,232	-		DDA3937_RS06030	0.54	-1.9
1,359,421	+				-0.0
1,359,421	+		DDA3937_RS06030	0.84	+0.4
1,359,422	-		DDA3937_RS06030	0.84	-2.0
1,359,422	-		DDA3937_RS06030	0.84	-0.2
1,359,422	-		DDA3937_RS06030	0.84	-1.4
1,359,429	+		DDA3937_RS06030	0.85	-0.1
1,359,429	+		DDA3937_RS06030	0.85	+0.5
1,359,430	-		DDA3937_RS06030	0.85	-0.6
1,359,430	-		DDA3937_RS06030	0.85	-1.4
1,359,430	-		DDA3937_RS06030	0.85	+0.1
1,359,468	+				+0.0
1,359,468	+				-0.5
1,359,468	+				-0.2
1,359,468	+				-0.6
1,359,468	+				-1.3
1,359,468	+				-0.3
1,359,469	-				-1.0
1,359,522	+				-0.5
1,359,600	+				+0.1
1,359,600	+				-0.4
1,359,601	-				+0.3
1,359,601	-				-0.6