Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04185

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS23035 and DDA3937_RS23405 are separated by 477 nucleotidesDDA3937_RS23405 and DDA3937_RS04180 are separated by 6 nucleotidesDDA3937_RS04180 and DDA3937_RS04185 are separated by 53 nucleotidesDDA3937_RS04185 and DDA3937_RS04190 overlap by 25 nucleotides DDA3937_RS23035: DDA3937_RS23035 - Fic family protein, at 924,557 to 925,606 _RS23035 DDA3937_RS23405: DDA3937_RS23405 - hypothetical protein, at 926,084 to 926,239 _RS23405 DDA3937_RS04180: DDA3937_RS04180 - ogr/Delta-like zinc finger family protein, at 926,246 to 926,512 _RS04180 DDA3937_RS04185: DDA3937_RS04185 - phage portal protein, at 926,566 to 927,615 _RS04185 DDA3937_RS04190: DDA3937_RS04190 - hypothetical protein, at 927,591 to 929,366 _RS04190 Position (kb) 926 927 928Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 925.574 kb on - strandat 925.591 kb on + strandat 925.667 kb on - strandat 925.823 kb on - strandat 925.896 kb on - strandat 925.896 kb on - strandat 925.900 kb on - strandat 925.900 kb on - strandat 925.955 kb on - strandat 926.010 kb on - strandat 926.065 kb on + strandat 926.066 kb on - strandat 926.066 kb on - strandat 926.082 kb on + strandat 926.226 kb on + strandat 926.226 kb on + strandat 926.226 kb on + strandat 926.227 kb on - strandat 926.247 kb on + strandat 926.273 kb on + strand, within DDA3937_RS04180at 926.273 kb on + strand, within DDA3937_RS04180at 926.421 kb on + strand, within DDA3937_RS04180at 926.421 kb on + strand, within DDA3937_RS04180at 926.422 kb on - strand, within DDA3937_RS04180at 926.422 kb on - strand, within DDA3937_RS04180at 926.422 kb on - strand, within DDA3937_RS04180at 926.513 kb on - strandat 926.513 kb on - strandat 926.531 kb on + strandat 926.532 kb on - strandat 926.558 kb on - strandat 926.586 kb on + strandat 926.586 kb on + strandat 926.785 kb on + strand, within DDA3937_RS04185at 926.785 kb on + strand, within DDA3937_RS04185at 926.785 kb on + strand, within DDA3937_RS04185at 926.786 kb on - strand, within DDA3937_RS04185at 926.786 kb on - strand, within DDA3937_RS04185at 926.786 kb on - strand, within DDA3937_RS04185at 926.890 kb on + strand, within DDA3937_RS04185at 926.970 kb on + strand, within DDA3937_RS04185at 926.970 kb on + strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.021 kb on - strand, within DDA3937_RS04185at 927.023 kb on + strand, within DDA3937_RS04185at 927.024 kb on - strand, within DDA3937_RS04185at 927.084 kb on - strand, within DDA3937_RS04185at 927.084 kb on - strand, within DDA3937_RS04185at 927.098 kb on + strand, within DDA3937_RS04185at 927.099 kb on - strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.119 kb on + strand, within DDA3937_RS04185at 927.120 kb on - strand, within DDA3937_RS04185at 927.152 kb on + strand, within DDA3937_RS04185at 927.179 kb on - strand, within DDA3937_RS04185at 927.198 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.212 kb on + strand, within DDA3937_RS04185at 927.213 kb on - strandat 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.213 kb on - strand, within DDA3937_RS04185at 927.262 kb on + strand, within DDA3937_RS04185at 927.263 kb on - strand, within DDA3937_RS04185at 927.263 kb on - strand, within DDA3937_RS04185at 927.267 kb on + strand, within DDA3937_RS04185at 927.268 kb on - strand, within DDA3937_RS04185at 927.268 kb on - strand, within DDA3937_RS04185at 927.296 kb on + strand, within DDA3937_RS04185at 927.347 kb on + strand, within DDA3937_RS04185at 927.347 kb on + strand, within DDA3937_RS04185at 927.348 kb on - strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.449 kb on + strand, within DDA3937_RS04185at 927.450 kb on - strand, within DDA3937_RS04185at 927.456 kb on + strand, within DDA3937_RS04185at 927.456 kb on + strand, within DDA3937_RS04185at 927.470 kb on + strand, within DDA3937_RS04185at 927.471 kb on - strand, within DDA3937_RS04185at 927.532 kb on - strandat 927.532 kb on - strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.534 kb on + strandat 927.535 kb on - strandat 927.638 kb on - strandat 927.638 kb on - strandat 927.767 kb on + strandat 927.767 kb on + strandat 927.768 kb on - strandat 927.768 kb on - strandat 927.958 kb on + strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.959 kb on - strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.962 kb on + strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 927.963 kb on - strand, within DDA3937_RS04190at 928.066 kb on + strand, within DDA3937_RS04190at 928.067 kb on - strand, within DDA3937_RS04190at 928.067 kb on - strand, within DDA3937_RS04190at 928.067 kb on - strand, within DDA3937_RS04190at 928.135 kb on - strand, within DDA3937_RS04190at 928.262 kb on + strand, within DDA3937_RS04190at 928.262 kb on + strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.263 kb on - strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.264 kb on + strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.265 kb on - strand, within DDA3937_RS04190at 928.291 kb on + strand, within DDA3937_RS04190at 928.363 kb on + strand, within DDA3937_RS04190at 928.519 kb on + strand, within DDA3937_RS04190at 928.519 kb on + strand, within DDA3937_RS04190at 928.520 kb on - strand, within DDA3937_RS04190at 928.520 kb on - strand, within DDA3937_RS04190at 928.569 kb on - strand, within DDA3937_RS04190at 928.597 kb on + strand, within DDA3937_RS04190at 928.610 kb on - strand, within DDA3937_RS04190

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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925,574 - +0.1
925,591 + -1.8
925,667 - -1.3
925,823 - -0.8
925,896 - -0.3
925,896 - -0.5
925,900 - -0.4
925,900 - +0.6
925,955 - +1.1
926,010 - -0.6
926,065 + -2.0
926,066 - +0.0
926,066 - -2.1
926,082 + -1.0
926,226 + +0.9
926,226 + -0.8
926,226 + -0.5
926,227 - -1.4
926,247 + -0.3
926,273 + DDA3937_RS04180 0.10 +0.0
926,273 + DDA3937_RS04180 0.10 -1.0
926,421 + DDA3937_RS04180 0.66 -0.3
926,421 + DDA3937_RS04180 0.66 -0.3
926,422 - DDA3937_RS04180 0.66 -1.9
926,422 - DDA3937_RS04180 0.66 -2.4
926,422 - DDA3937_RS04180 0.66 +0.0
926,513 - -0.7
926,513 - -1.3
926,531 + -1.4
926,532 - +1.0
926,558 - -0.2
926,586 + -1.3
926,586 + +0.4
926,785 + DDA3937_RS04185 0.21 -0.5
926,785 + DDA3937_RS04185 0.21 -0.8
926,785 + DDA3937_RS04185 0.21 -0.5
926,786 - DDA3937_RS04185 0.21 +0.5
926,786 - DDA3937_RS04185 0.21 -0.1
926,786 - DDA3937_RS04185 0.21 +0.1
926,890 + DDA3937_RS04185 0.31 -1.3
926,970 + DDA3937_RS04185 0.38 +0.6
926,970 + DDA3937_RS04185 0.38 +0.7
927,021 - DDA3937_RS04185 0.43 +1.4
927,021 - DDA3937_RS04185 0.43 -0.7
927,021 - DDA3937_RS04185 0.43 +1.0
927,021 - DDA3937_RS04185 0.43 -1.8
927,023 + DDA3937_RS04185 0.44 -0.6
927,024 - DDA3937_RS04185 0.44 +3.0
927,084 - DDA3937_RS04185 0.49 -0.6
927,084 - DDA3937_RS04185 0.49 +0.0
927,098 + DDA3937_RS04185 0.51 -1.8
927,099 - DDA3937_RS04185 0.51 +0.1
927,119 + DDA3937_RS04185 0.53 -0.4
927,119 + DDA3937_RS04185 0.53 +1.5
927,119 + DDA3937_RS04185 0.53 +0.2
927,119 + DDA3937_RS04185 0.53 +0.5
927,120 - DDA3937_RS04185 0.53 -0.4
927,152 + DDA3937_RS04185 0.56 -0.8
927,179 - DDA3937_RS04185 0.58 +0.3
927,198 + DDA3937_RS04185 0.60 -1.8
927,212 + DDA3937_RS04185 0.62 +1.0
927,212 + DDA3937_RS04185 0.62 +0.4
927,212 + DDA3937_RS04185 0.62 +0.3
927,212 + DDA3937_RS04185 0.62 -2.0
927,213 - +0.5
927,213 - DDA3937_RS04185 0.62 -0.5
927,213 - DDA3937_RS04185 0.62 -0.8
927,213 - DDA3937_RS04185 0.62 -1.6
927,213 - DDA3937_RS04185 0.62 -0.2
927,213 - DDA3937_RS04185 0.62 +0.1
927,213 - DDA3937_RS04185 0.62 -0.5
927,213 - DDA3937_RS04185 0.62 +0.7
927,213 - DDA3937_RS04185 0.62 -0.0
927,213 - DDA3937_RS04185 0.62 +0.3
927,262 + DDA3937_RS04185 0.66 -1.8
927,263 - DDA3937_RS04185 0.66 -0.2
927,263 - DDA3937_RS04185 0.66 +0.7
927,267 + DDA3937_RS04185 0.67 -0.4
927,268 - DDA3937_RS04185 0.67 -0.0
927,268 - DDA3937_RS04185 0.67 +0.5
927,296 + DDA3937_RS04185 0.70 +0.0
927,347 + DDA3937_RS04185 0.74 +0.5
927,347 + DDA3937_RS04185 0.74 -0.6
927,348 - DDA3937_RS04185 0.74 +1.8
927,449 + DDA3937_RS04185 0.84 +0.1
927,449 + DDA3937_RS04185 0.84 -2.0
927,449 + DDA3937_RS04185 0.84 +0.0
927,449 + DDA3937_RS04185 0.84 +0.7
927,450 - DDA3937_RS04185 0.84 +0.6
927,456 + DDA3937_RS04185 0.85 +0.4
927,456 + DDA3937_RS04185 0.85 +0.3
927,470 + DDA3937_RS04185 0.86 -1.2
927,471 - DDA3937_RS04185 0.86 -0.6
927,532 - -0.3
927,532 - -0.5
927,534 + -0.6
927,534 + -0.6
927,534 + +0.0
927,534 + -0.8
927,534 + +0.2
927,535 - -0.8
927,638 - -1.7
927,638 - +0.3
927,767 + +7.3
927,767 + +1.9
927,768 - +0.8
927,768 - -0.6
927,958 + DDA3937_RS04190 0.21 +0.3
927,959 - DDA3937_RS04190 0.21 +0.7
927,959 - DDA3937_RS04190 0.21 +0.0
927,959 - DDA3937_RS04190 0.21 -1.5
927,959 - DDA3937_RS04190 0.21 -0.8
927,962 + DDA3937_RS04190 0.21 +0.0
927,962 + DDA3937_RS04190 0.21 +0.3
927,962 + DDA3937_RS04190 0.21 -0.6
927,962 + DDA3937_RS04190 0.21 -0.2
927,962 + DDA3937_RS04190 0.21 +0.9
927,963 - DDA3937_RS04190 0.21 +0.8
927,963 - DDA3937_RS04190 0.21 -0.2
927,963 - DDA3937_RS04190 0.21 -1.6
927,963 - DDA3937_RS04190 0.21 -0.2
927,963 - DDA3937_RS04190 0.21 -1.3
927,963 - DDA3937_RS04190 0.21 -0.4
927,963 - DDA3937_RS04190 0.21 +1.5
927,963 - DDA3937_RS04190 0.21 -1.1
928,066 + DDA3937_RS04190 0.27 +0.6
928,067 - DDA3937_RS04190 0.27 -0.6
928,067 - DDA3937_RS04190 0.27 +0.2
928,067 - DDA3937_RS04190 0.27 +4.2
928,135 - DDA3937_RS04190 0.31 -0.9
928,262 + DDA3937_RS04190 0.38 -0.4
928,262 + DDA3937_RS04190 0.38 +0.2
928,263 - DDA3937_RS04190 0.38 -1.2
928,263 - DDA3937_RS04190 0.38 +1.0
928,263 - DDA3937_RS04190 0.38 +1.2
928,263 - DDA3937_RS04190 0.38 -0.4
928,263 - DDA3937_RS04190 0.38 -0.4
928,263 - DDA3937_RS04190 0.38 +0.8
928,264 + DDA3937_RS04190 0.38 -0.2
928,264 + DDA3937_RS04190 0.38 +0.3
928,264 + DDA3937_RS04190 0.38 -0.9
928,264 + DDA3937_RS04190 0.38 +1.7
928,264 + DDA3937_RS04190 0.38 +0.2
928,264 + DDA3937_RS04190 0.38 -0.3
928,264 + DDA3937_RS04190 0.38 +0.2
928,264 + DDA3937_RS04190 0.38 -0.7
928,264 + DDA3937_RS04190 0.38 +0.0
928,264 + DDA3937_RS04190 0.38 +0.2
928,265 - DDA3937_RS04190 0.38 -0.4
928,265 - DDA3937_RS04190 0.38 +0.7
928,265 - DDA3937_RS04190 0.38 +0.3
928,265 - DDA3937_RS04190 0.38 -0.8
928,265 - DDA3937_RS04190 0.38 +0.0
928,291 + DDA3937_RS04190 0.39 -1.0
928,363 + DDA3937_RS04190 0.43 -1.3
928,519 + DDA3937_RS04190 0.52 -1.0
928,519 + DDA3937_RS04190 0.52 -0.0
928,520 - DDA3937_RS04190 0.52 +0.0
928,520 - DDA3937_RS04190 0.52 +0.7
928,569 - DDA3937_RS04190 0.55 -0.9
928,597 + DDA3937_RS04190 0.57 +0.6
928,610 - DDA3937_RS04190 0.57 -1.3

Or see this region's nucleotide sequence