Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21885 and DDA3937_RS03945 are separated by 100 nucleotides DDA3937_RS03945 and DDA3937_RS03950 overlap by 1 nucleotides
DDA3937_RS21885: DDA3937_RS21885 - hypothetical protein, at 879,640 to 880,596
_RS21885
DDA3937_RS03945: DDA3937_RS03945 - DNA sulfur modification protein DndE, at 880,697 to 881,050
_RS03945
DDA3937_RS03950: DDA3937_RS03950 - DNA sulfur modification protein DndD, at 881,050 to 883,059
_RS03950
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 879.756 kb on - strand, within DDA3937_RS21885 at 879.767 kb on - strand, within DDA3937_RS21885 at 879.787 kb on - strand, within DDA3937_RS21885 at 879.789 kb on + strand, within DDA3937_RS21885 at 879.917 kb on - strand, within DDA3937_RS21885 at 879.975 kb on - strand, within DDA3937_RS21885 at 880.140 kb on + strand, within DDA3937_RS21885 at 880.141 kb on - strand, within DDA3937_RS21885 at 880.154 kb on - strand, within DDA3937_RS21885 at 880.201 kb on - strand, within DDA3937_RS21885 at 880.242 kb on + strand, within DDA3937_RS21885 at 880.243 kb on - strand, within DDA3937_RS21885 at 880.369 kb on - strand, within DDA3937_RS21885 at 880.543 kb on - strand at 880.732 kb on - strand at 880.897 kb on + strand, within DDA3937_RS03945 at 880.897 kb on + strand at 880.897 kb on + strand, within DDA3937_RS03945 at 880.898 kb on - strand, within DDA3937_RS03945 at 880.985 kb on - strand, within DDA3937_RS03945 at 880.987 kb on - strand, within DDA3937_RS03945 at 880.994 kb on + strand, within DDA3937_RS03945 at 881.002 kb on + strand, within DDA3937_RS03945 at 881.002 kb on + strand, within DDA3937_RS03945 at 881.027 kb on - strand at 881.065 kb on - strand at 881.069 kb on - strand at 881.098 kb on - strand at 881.143 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.146 kb on - strand at 881.146 kb on - strand at 881.171 kb on + strand at 881.183 kb on - strand at 881.183 kb on - strand at 881.234 kb on + strand at 881.250 kb on + strand at 881.351 kb on + strand, within DDA3937_RS03950 at 881.389 kb on - strand, within DDA3937_RS03950 at 881.441 kb on - strand at 881.459 kb on - strand, within DDA3937_RS03950 at 881.502 kb on + strand, within DDA3937_RS03950 at 881.549 kb on + strand, within DDA3937_RS03950 at 881.550 kb on - strand, within DDA3937_RS03950 at 881.584 kb on - strand, within DDA3937_RS03950 at 881.596 kb on - strand, within DDA3937_RS03950 at 881.596 kb on - strand at 881.636 kb on - strand, within DDA3937_RS03950 at 881.725 kb on - strand, within DDA3937_RS03950 at 881.791 kb on - strand, within DDA3937_RS03950 at 881.793 kb on + strand, within DDA3937_RS03950 at 881.793 kb on + strand, within DDA3937_RS03950 at 881.794 kb on - strand, within DDA3937_RS03950 at 881.794 kb on - strand, within DDA3937_RS03950 at 881.794 kb on - strand, within DDA3937_RS03950 at 881.843 kb on + strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.902 kb on - strand, within DDA3937_RS03950 at 881.920 kb on + strand, within DDA3937_RS03950 at 881.922 kb on + strand, within DDA3937_RS03950 at 881.950 kb on - strand, within DDA3937_RS03950 at 881.957 kb on - strand, within DDA3937_RS03950 at 881.958 kb on + strand, within DDA3937_RS03950 at 881.959 kb on - strand, within DDA3937_RS03950 at 881.959 kb on - strand, within DDA3937_RS03950 at 881.960 kb on + strand, within DDA3937_RS03950 at 881.960 kb on + strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 882.006 kb on + strand, within DDA3937_RS03950 at 882.007 kb on - strand, within DDA3937_RS03950 at 882.010 kb on - strand, within DDA3937_RS03950 at 882.010 kb on - strand, within DDA3937_RS03950 at 882.018 kb on + strand, within DDA3937_RS03950 at 882.033 kb on + strand, within DDA3937_RS03950 at 882.033 kb on + strand, within DDA3937_RS03950 at 882.034 kb on - strand, within DDA3937_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 879,756 - DDA3937_RS21885 0.12 -1.2 879,767 - DDA3937_RS21885 0.13 +0.1 879,787 - DDA3937_RS21885 0.15 +0.2 879,789 + DDA3937_RS21885 0.16 -0.5 879,917 - DDA3937_RS21885 0.29 -0.9 879,975 - DDA3937_RS21885 0.35 +1.3 880,140 + DDA3937_RS21885 0.52 +0.1 880,141 - DDA3937_RS21885 0.52 -0.3 880,154 - DDA3937_RS21885 0.54 -3.6 880,201 - DDA3937_RS21885 0.59 -0.3 880,242 + DDA3937_RS21885 0.63 -0.2 880,243 - DDA3937_RS21885 0.63 -0.3 880,369 - DDA3937_RS21885 0.76 +0.1 880,543 - -1.2 880,732 - +0.3 880,897 + DDA3937_RS03945 0.56 +0.1 880,897 + +0.3 880,897 + DDA3937_RS03945 0.56 -2.2 880,898 - DDA3937_RS03945 0.57 -1.4 880,985 - DDA3937_RS03945 0.81 -1.0 880,987 - DDA3937_RS03945 0.82 +0.1 880,994 + DDA3937_RS03945 0.84 -0.5 881,002 + DDA3937_RS03945 0.86 -0.6 881,002 + DDA3937_RS03945 0.86 -1.3 881,027 - -1.4 881,065 - -0.2 881,069 - +0.5 881,098 - -0.0 881,143 + +0.1 881,145 + -2.1 881,145 + -0.7 881,145 + -1.3 881,145 + -0.8 881,145 + -0.4 881,146 - -0.5 881,146 - +1.2 881,171 + -0.3 881,183 - +0.8 881,183 - -0.4 881,234 + +0.7 881,250 + -0.4 881,351 + DDA3937_RS03950 0.15 -1.7 881,389 - DDA3937_RS03950 0.17 -0.4 881,441 - +2.4 881,459 - DDA3937_RS03950 0.20 -1.9 881,502 + DDA3937_RS03950 0.22 +0.2 881,549 + DDA3937_RS03950 0.25 -0.7 881,550 - DDA3937_RS03950 0.25 -1.9 881,584 - DDA3937_RS03950 0.27 -1.2 881,596 - DDA3937_RS03950 0.27 -0.8 881,596 - +0.1 881,636 - DDA3937_RS03950 0.29 -1.9 881,725 - DDA3937_RS03950 0.34 +0.1 881,791 - DDA3937_RS03950 0.37 -0.4 881,793 + DDA3937_RS03950 0.37 -0.8 881,793 + DDA3937_RS03950 0.37 -2.1 881,794 - DDA3937_RS03950 0.37 +0.3 881,794 - DDA3937_RS03950 0.37 -1.2 881,794 - DDA3937_RS03950 0.37 -0.3 881,843 + DDA3937_RS03950 0.39 +0.0 881,844 - DDA3937_RS03950 0.40 -0.4 881,844 - DDA3937_RS03950 0.40 -0.0 881,844 - DDA3937_RS03950 0.40 +0.2 881,844 - DDA3937_RS03950 0.40 -1.9 881,902 - DDA3937_RS03950 0.42 -2.1 881,920 + DDA3937_RS03950 0.43 -0.0 881,922 + DDA3937_RS03950 0.43 +0.1 881,950 - DDA3937_RS03950 0.45 +0.7 881,957 - DDA3937_RS03950 0.45 -0.5 881,958 + DDA3937_RS03950 0.45 -2.3 881,959 - DDA3937_RS03950 0.45 +0.8 881,959 - DDA3937_RS03950 0.45 -0.3 881,960 + DDA3937_RS03950 0.45 +0.0 881,960 + DDA3937_RS03950 0.45 +0.4 881,961 - DDA3937_RS03950 0.45 +0.1 881,961 - DDA3937_RS03950 0.45 +0.1 881,961 - DDA3937_RS03950 0.45 -1.3 881,961 - DDA3937_RS03950 0.45 +0.5 881,961 - DDA3937_RS03950 0.45 -0.2 881,961 - DDA3937_RS03950 0.45 +1.1 881,961 - DDA3937_RS03950 0.45 -0.9 881,961 - DDA3937_RS03950 0.45 +0.7 881,961 - DDA3937_RS03950 0.45 +0.2 882,006 + DDA3937_RS03950 0.48 -0.5 882,007 - DDA3937_RS03950 0.48 +1.8 882,010 - DDA3937_RS03950 0.48 -1.9 882,010 - DDA3937_RS03950 0.48 +1.1 882,018 + DDA3937_RS03950 0.48 -0.5 882,033 + DDA3937_RS03950 0.49 +0.1 882,033 + DDA3937_RS03950 0.49 -0.9 882,034 - DDA3937_RS03950 0.49 +0.3
Or see this region's nucleotide sequence