Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03685 and DDA3937_RS23020 are separated by 322 nucleotides DDA3937_RS23020 and DDA3937_RS03690 are separated by 358 nucleotides DDA3937_RS03690 and DDA3937_RS03695 are separated by 158 nucleotides DDA3937_RS03695 and DDA3937_RS03700 are separated by 152 nucleotides
DDA3937_RS03685: DDA3937_RS03685 - PAS domain-containing methyl-accepting chemotaxis protein, at 814,606 to 815,904
_RS03685
DDA3937_RS23020: DDA3937_RS23020 - hypothetical protein, at 816,227 to 816,424
_RS23020
DDA3937_RS03690: DDA3937_RS03690 - AAA family ATPase, at 816,783 to 817,532
_RS03690
DDA3937_RS03695: DDA3937_RS03695 - hypothetical protein, at 817,691 to 818,161
_RS03695
DDA3937_RS03700: DDA3937_RS03700 - inositol 2-dehydrogenase, at 818,314 to 819,300
_RS03700
Position (kb) 816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 815.798 kb on + strand at 815.799 kb on - strand at 815.799 kb on - strand at 815.799 kb on - strand at 815.826 kb on + strand at 815.826 kb on + strand at 815.827 kb on - strand at 815.827 kb on - strand at 815.915 kb on + strand at 815.915 kb on + strand at 815.915 kb on + strand at 815.916 kb on - strand at 815.916 kb on - strand at 815.916 kb on - strand at 815.928 kb on + strand at 815.929 kb on - strand at 815.929 kb on - strand at 815.943 kb on + strand at 815.959 kb on + strand at 815.976 kb on - strand at 815.982 kb on + strand at 815.983 kb on - strand at 815.983 kb on - strand at 815.986 kb on + strand at 815.987 kb on - strand at 815.992 kb on - strand at 816.080 kb on - strand at 816.082 kb on + strand at 816.082 kb on + strand at 816.083 kb on - strand at 816.094 kb on - strand at 816.094 kb on - strand at 816.100 kb on - strand at 816.100 kb on - strand at 816.123 kb on - strand at 816.141 kb on - strand at 816.142 kb on + strand at 816.229 kb on - strand at 816.366 kb on + strand, within DDA3937_RS23020 at 816.366 kb on + strand, within DDA3937_RS23020 at 816.413 kb on + strand at 816.413 kb on + strand at 816.414 kb on - strand at 816.414 kb on - strand at 816.414 kb on - strand at 816.414 kb on - strand at 816.415 kb on + strand at 816.415 kb on + strand at 816.416 kb on - strand at 816.416 kb on - strand at 816.416 kb on - strand at 816.416 kb on - strand at 816.417 kb on + strand at 816.417 kb on + strand at 816.418 kb on - strand at 816.418 kb on - strand at 816.438 kb on - strand at 816.550 kb on - strand at 816.565 kb on - strand at 816.583 kb on - strand at 816.583 kb on - strand at 816.669 kb on - strand at 816.740 kb on + strand at 816.879 kb on + strand, within DDA3937_RS03690 at 816.882 kb on - strand, within DDA3937_RS03690 at 816.954 kb on - strand, within DDA3937_RS03690 at 816.975 kb on - strand, within DDA3937_RS03690 at 817.049 kb on - strand, within DDA3937_RS03690 at 817.049 kb on - strand at 817.049 kb on - strand, within DDA3937_RS03690 at 817.081 kb on - strand, within DDA3937_RS03690 at 817.117 kb on - strand, within DDA3937_RS03690 at 817.139 kb on + strand, within DDA3937_RS03690 at 817.246 kb on - strand, within DDA3937_RS03690 at 817.275 kb on + strand at 817.428 kb on - strand, within DDA3937_RS03690 at 817.445 kb on + strand, within DDA3937_RS03690 at 817.505 kb on + strand at 817.515 kb on - strand at 817.515 kb on - strand at 817.599 kb on + strand at 817.660 kb on + strand at 817.660 kb on + strand at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 818.026 kb on + strand, within DDA3937_RS03695 at 818.051 kb on + strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.069 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.246 kb on + strand at 818.247 kb on - strand at 818.272 kb on + strand at 818.273 kb on - strand at 818.273 kb on - strand at 818.309 kb on + strand at 818.310 kb on - strand at 818.320 kb on - strand at 818.399 kb on - strand at 818.445 kb on + strand, within DDA3937_RS03700 at 818.449 kb on + strand, within DDA3937_RS03700 at 818.450 kb on - strand, within DDA3937_RS03700 at 818.499 kb on - strand, within DDA3937_RS03700
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 815,798 + +0.1 815,799 - -0.7 815,799 - +0.1 815,799 - -0.9 815,826 + -0.7 815,826 + -0.7 815,827 - -1.3 815,827 - -0.6 815,915 + -0.7 815,915 + -0.6 815,915 + -1.2 815,916 - -1.4 815,916 - -1.3 815,916 - -0.9 815,928 + -1.0 815,929 - +1.2 815,929 - +2.9 815,943 + +0.3 815,959 + -1.1 815,976 - +0.3 815,982 + -1.3 815,983 - +0.5 815,983 - -2.4 815,986 + -0.1 815,987 - -0.8 815,992 - +1.1 816,080 - -0.9 816,082 + -0.8 816,082 + -1.2 816,083 - +0.3 816,094 - -0.8 816,094 - +0.8 816,100 - -0.7 816,100 - +0.4 816,123 - -1.5 816,141 - +0.3 816,142 + -0.2 816,229 - -0.4 816,366 + DDA3937_RS23020 0.70 +0.1 816,366 + DDA3937_RS23020 0.70 -0.4 816,413 + +1.2 816,413 + -1.4 816,414 - +0.5 816,414 - -0.3 816,414 - +1.4 816,414 - -1.2 816,415 + -0.6 816,415 + -1.4 816,416 - +0.3 816,416 - -0.2 816,416 - -0.6 816,416 - +0.5 816,417 + +0.7 816,417 + -0.3 816,418 - -1.6 816,418 - -1.1 816,438 - -0.0 816,550 - -0.1 816,565 - +0.9 816,583 - +2.9 816,583 - +0.5 816,669 - -1.1 816,740 + -0.5 816,879 + DDA3937_RS03690 0.13 -2.2 816,882 - DDA3937_RS03690 0.13 -0.1 816,954 - DDA3937_RS03690 0.23 -0.0 816,975 - DDA3937_RS03690 0.26 -1.1 817,049 - DDA3937_RS03690 0.35 -1.0 817,049 - -0.5 817,049 - DDA3937_RS03690 0.35 -0.8 817,081 - DDA3937_RS03690 0.40 -1.6 817,117 - DDA3937_RS03690 0.45 -0.5 817,139 + DDA3937_RS03690 0.47 -0.7 817,246 - DDA3937_RS03690 0.62 -2.5 817,275 + -0.1 817,428 - DDA3937_RS03690 0.86 -0.6 817,445 + DDA3937_RS03690 0.88 -1.5 817,505 + -0.7 817,515 - -2.7 817,515 - -1.5 817,599 + +1.2 817,660 + -0.4 817,660 + +1.5 817,769 + DDA3937_RS03695 0.17 +0.1 817,769 + DDA3937_RS03695 0.17 +0.7 817,769 + DDA3937_RS03695 0.17 +0.8 818,026 + DDA3937_RS03695 0.71 -0.2 818,051 + DDA3937_RS03695 0.76 +0.4 818,052 - DDA3937_RS03695 0.77 +0.3 818,052 - DDA3937_RS03695 0.77 -0.5 818,052 - DDA3937_RS03695 0.77 +0.3 818,052 - DDA3937_RS03695 0.77 +1.4 818,069 + DDA3937_RS03695 0.80 -1.0 818,086 + DDA3937_RS03695 0.84 -0.5 818,086 + DDA3937_RS03695 0.84 -2.0 818,161 + +0.1 818,161 + +0.3 818,161 + +0.1 818,161 + -0.1 818,162 - -0.6 818,162 - +1.2 818,162 - +0.1 818,162 - +0.6 818,162 - -0.2 818,162 - -1.0 818,162 - -0.1 818,246 + -1.3 818,247 - +0.2 818,272 + -1.4 818,273 - -0.3 818,273 - +1.1 818,309 + -0.1 818,310 - -0.1 818,320 - -0.4 818,399 - -1.5 818,445 + DDA3937_RS03700 0.13 +1.1 818,449 + DDA3937_RS03700 0.14 -2.4 818,450 - DDA3937_RS03700 0.14 -1.2 818,499 - DDA3937_RS03700 0.19 -0.3
Or see this region's nucleotide sequence