Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03465

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03460 and DDA3937_RS03465 are separated by 221 nucleotidesDDA3937_RS03465 and DDA3937_RS03470 are separated by 46 nucleotides DDA3937_RS03460: DDA3937_RS03460 - NCS2 family permease, at 756,258 to 757,625 _RS03460 DDA3937_RS03465: DDA3937_RS03465 - Na+/H+ antiporter, at 757,847 to 759,493 _RS03465 DDA3937_RS03470: DDA3937_RS03470 - cation/acetate symporter ActP, at 759,540 to 761,198 _RS03470 Position (kb) 757 758 759 760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 756.952 kb on - strand, within DDA3937_RS03460at 756.952 kb on - strand, within DDA3937_RS03460at 757.233 kb on + strand, within DDA3937_RS03460at 757.234 kb on - strand, within DDA3937_RS03460at 757.339 kb on - strand, within DDA3937_RS03460at 757.339 kb on - strand, within DDA3937_RS03460at 757.339 kb on - strand, within DDA3937_RS03460at 757.377 kb on + strand, within DDA3937_RS03460at 757.377 kb on + strandat 757.377 kb on + strand, within DDA3937_RS03460at 757.377 kb on + strand, within DDA3937_RS03460at 757.377 kb on + strand, within DDA3937_RS03460at 757.377 kb on + strand, within DDA3937_RS03460at 757.377 kb on + strand, within DDA3937_RS03460at 757.377 kb on + strand, within DDA3937_RS03460at 757.377 kb on + strand, within DDA3937_RS03460at 757.378 kb on - strand, within DDA3937_RS03460at 757.378 kb on - strand, within DDA3937_RS03460at 757.378 kb on - strand, within DDA3937_RS03460at 757.378 kb on - strand, within DDA3937_RS03460at 757.378 kb on - strand, within DDA3937_RS03460at 757.378 kb on - strand, within DDA3937_RS03460at 757.378 kb on - strand, within DDA3937_RS03460at 757.481 kb on + strand, within DDA3937_RS03460at 757.482 kb on - strand, within DDA3937_RS03460at 757.482 kb on - strand, within DDA3937_RS03460at 757.602 kb on + strandat 757.603 kb on - strandat 757.650 kb on - strandat 757.675 kb on + strandat 757.687 kb on - strandat 757.744 kb on - strandat 757.744 kb on - strandat 757.744 kb on - strandat 757.744 kb on - strandat 757.755 kb on - strandat 757.823 kb on + strandat 757.823 kb on + strandat 757.823 kb on + strandat 757.824 kb on - strandat 757.874 kb on - strandat 757.874 kb on - strandat 757.902 kb on + strandat 758.017 kb on + strand, within DDA3937_RS03465at 758.089 kb on + strand, within DDA3937_RS03465at 758.090 kb on - strand, within DDA3937_RS03465at 758.090 kb on - strand, within DDA3937_RS03465at 758.090 kb on - strand, within DDA3937_RS03465at 758.090 kb on - strand, within DDA3937_RS03465at 758.118 kb on + strand, within DDA3937_RS03465at 758.151 kb on - strand, within DDA3937_RS03465at 758.151 kb on - strand, within DDA3937_RS03465at 758.154 kb on + strand, within DDA3937_RS03465at 758.154 kb on + strand, within DDA3937_RS03465at 758.155 kb on - strand, within DDA3937_RS03465at 758.155 kb on - strand, within DDA3937_RS03465at 758.155 kb on - strand, within DDA3937_RS03465at 758.155 kb on - strand, within DDA3937_RS03465at 758.155 kb on - strand, within DDA3937_RS03465at 758.289 kb on + strand, within DDA3937_RS03465at 758.374 kb on + strand, within DDA3937_RS03465at 758.454 kb on - strand, within DDA3937_RS03465at 758.459 kb on - strand, within DDA3937_RS03465at 758.517 kb on + strandat 758.544 kb on - strand, within DDA3937_RS03465at 758.605 kb on + strand, within DDA3937_RS03465at 758.816 kb on + strand, within DDA3937_RS03465at 758.817 kb on - strand, within DDA3937_RS03465at 758.817 kb on - strand, within DDA3937_RS03465at 758.817 kb on - strand, within DDA3937_RS03465at 758.817 kb on - strand, within DDA3937_RS03465at 758.817 kb on - strand, within DDA3937_RS03465at 758.876 kb on + strand, within DDA3937_RS03465at 758.877 kb on - strand, within DDA3937_RS03465at 758.877 kb on - strand, within DDA3937_RS03465at 758.877 kb on - strand, within DDA3937_RS03465at 758.877 kb on - strand, within DDA3937_RS03465at 758.880 kb on + strand, within DDA3937_RS03465at 758.881 kb on - strandat 758.887 kb on + strand, within DDA3937_RS03465at 758.887 kb on + strand, within DDA3937_RS03465at 758.887 kb on + strand, within DDA3937_RS03465at 758.912 kb on + strand, within DDA3937_RS03465at 758.912 kb on + strand, within DDA3937_RS03465at 758.913 kb on - strand, within DDA3937_RS03465at 758.952 kb on + strand, within DDA3937_RS03465at 759.115 kb on + strand, within DDA3937_RS03465at 759.116 kb on - strand, within DDA3937_RS03465at 759.116 kb on - strand, within DDA3937_RS03465at 759.283 kb on + strand, within DDA3937_RS03465at 759.283 kb on + strand, within DDA3937_RS03465at 759.395 kb on + strandat 759.395 kb on + strandat 759.396 kb on - strandat 759.418 kb on + strandat 759.541 kb on + strandat 759.703 kb on + strandat 759.703 kb on + strandat 759.704 kb on - strandat 759.704 kb on - strandat 759.772 kb on - strand, within DDA3937_RS03470at 759.835 kb on + strand, within DDA3937_RS03470at 759.835 kb on + strand, within DDA3937_RS03470at 759.835 kb on + strand, within DDA3937_RS03470at 759.835 kb on + strand, within DDA3937_RS03470at 759.835 kb on + strand, within DDA3937_RS03470at 759.836 kb on - strand, within DDA3937_RS03470at 759.836 kb on - strand, within DDA3937_RS03470at 759.836 kb on - strand, within DDA3937_RS03470at 759.863 kb on + strand, within DDA3937_RS03470at 759.900 kb on - strand, within DDA3937_RS03470at 759.900 kb on - strand, within DDA3937_RS03470at 759.900 kb on - strand, within DDA3937_RS03470at 759.964 kb on - strand, within DDA3937_RS03470at 760.030 kb on + strand, within DDA3937_RS03470at 760.031 kb on - strand, within DDA3937_RS03470at 760.031 kb on - strand, within DDA3937_RS03470at 760.031 kb on - strand, within DDA3937_RS03470at 760.115 kb on + strand, within DDA3937_RS03470at 760.116 kb on - strand, within DDA3937_RS03470at 760.268 kb on - strand, within DDA3937_RS03470at 760.268 kb on - strand, within DDA3937_RS03470at 760.273 kb on + strand, within DDA3937_RS03470at 760.273 kb on + strand, within DDA3937_RS03470at 760.274 kb on - strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.352 kb on + strand, within DDA3937_RS03470at 760.352 kb on + strand, within DDA3937_RS03470at 760.352 kb on + strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.448 kb on + strand, within DDA3937_RS03470

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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756,952 - DDA3937_RS03460 0.51 +2.4
756,952 - DDA3937_RS03460 0.51 +1.8
757,233 + DDA3937_RS03460 0.71 -0.2
757,234 - DDA3937_RS03460 0.71 -0.5
757,339 - DDA3937_RS03460 0.79 -0.6
757,339 - DDA3937_RS03460 0.79 -0.5
757,339 - DDA3937_RS03460 0.79 +4.1
757,377 + DDA3937_RS03460 0.82 -2.3
757,377 + +1.7
757,377 + DDA3937_RS03460 0.82 -2.5
757,377 + DDA3937_RS03460 0.82 -0.9
757,377 + DDA3937_RS03460 0.82 -0.6
757,377 + DDA3937_RS03460 0.82 +0.2
757,377 + DDA3937_RS03460 0.82 +0.1
757,377 + DDA3937_RS03460 0.82 -0.1
757,377 + DDA3937_RS03460 0.82 -0.5
757,378 - DDA3937_RS03460 0.82 -0.5
757,378 - DDA3937_RS03460 0.82 -1.1
757,378 - DDA3937_RS03460 0.82 -0.1
757,378 - DDA3937_RS03460 0.82 -0.4
757,378 - DDA3937_RS03460 0.82 -0.4
757,378 - DDA3937_RS03460 0.82 -1.0
757,378 - DDA3937_RS03460 0.82 +1.1
757,481 + DDA3937_RS03460 0.89 -0.2
757,482 - DDA3937_RS03460 0.89 +0.3
757,482 - DDA3937_RS03460 0.89 -2.9
757,602 + -0.2
757,603 - +0.1
757,650 - -0.3
757,675 + +0.2
757,687 - -0.4
757,744 - +0.6
757,744 - +0.8
757,744 - +0.1
757,744 - -0.4
757,755 - -0.4
757,823 + -0.6
757,823 + -1.0
757,823 + -0.8
757,824 - -0.7
757,874 - -2.2
757,874 - -2.2
757,902 + -1.1
758,017 + DDA3937_RS03465 0.10 -1.2
758,089 + DDA3937_RS03465 0.15 -1.5
758,090 - DDA3937_RS03465 0.15 -0.2
758,090 - DDA3937_RS03465 0.15 -0.7
758,090 - DDA3937_RS03465 0.15 -1.8
758,090 - DDA3937_RS03465 0.15 -3.0
758,118 + DDA3937_RS03465 0.16 -1.4
758,151 - DDA3937_RS03465 0.18 -0.2
758,151 - DDA3937_RS03465 0.18 +1.1
758,154 + DDA3937_RS03465 0.19 -1.8
758,154 + DDA3937_RS03465 0.19 -1.3
758,155 - DDA3937_RS03465 0.19 -0.9
758,155 - DDA3937_RS03465 0.19 +0.6
758,155 - DDA3937_RS03465 0.19 -0.5
758,155 - DDA3937_RS03465 0.19 -2.5
758,155 - DDA3937_RS03465 0.19 -2.9
758,289 + DDA3937_RS03465 0.27 -1.5
758,374 + DDA3937_RS03465 0.32 -0.2
758,454 - DDA3937_RS03465 0.37 -1.5
758,459 - DDA3937_RS03465 0.37 -0.1
758,517 + +2.1
758,544 - DDA3937_RS03465 0.42 -2.1
758,605 + DDA3937_RS03465 0.46 -1.0
758,816 + DDA3937_RS03465 0.59 -0.1
758,817 - DDA3937_RS03465 0.59 -2.6
758,817 - DDA3937_RS03465 0.59 -1.5
758,817 - DDA3937_RS03465 0.59 -2.2
758,817 - DDA3937_RS03465 0.59 +0.1
758,817 - DDA3937_RS03465 0.59 -1.2
758,876 + DDA3937_RS03465 0.62 -1.0
758,877 - DDA3937_RS03465 0.63 -2.5
758,877 - DDA3937_RS03465 0.63 -0.2
758,877 - DDA3937_RS03465 0.63 -1.1
758,877 - DDA3937_RS03465 0.63 -0.4
758,880 + DDA3937_RS03465 0.63 -0.3
758,881 - -0.3
758,887 + DDA3937_RS03465 0.63 -2.8
758,887 + DDA3937_RS03465 0.63 -1.3
758,887 + DDA3937_RS03465 0.63 -0.8
758,912 + DDA3937_RS03465 0.65 -1.5
758,912 + DDA3937_RS03465 0.65 -1.0
758,913 - DDA3937_RS03465 0.65 -1.5
758,952 + DDA3937_RS03465 0.67 -0.9
759,115 + DDA3937_RS03465 0.77 -1.7
759,116 - DDA3937_RS03465 0.77 +0.4
759,116 - DDA3937_RS03465 0.77 -1.8
759,283 + DDA3937_RS03465 0.87 +0.7
759,283 + DDA3937_RS03465 0.87 -0.0
759,395 + +0.4
759,395 + -0.4
759,396 - -0.2
759,418 + -0.1
759,541 + -0.7
759,703 + +0.6
759,703 + -0.2
759,704 - +0.5
759,704 - -0.6
759,772 - DDA3937_RS03470 0.14 +0.8
759,835 + DDA3937_RS03470 0.18 -0.6
759,835 + DDA3937_RS03470 0.18 +0.9
759,835 + DDA3937_RS03470 0.18 -0.2
759,835 + DDA3937_RS03470 0.18 -1.0
759,835 + DDA3937_RS03470 0.18 +0.6
759,836 - DDA3937_RS03470 0.18 -0.8
759,836 - DDA3937_RS03470 0.18 -0.3
759,836 - DDA3937_RS03470 0.18 -0.6
759,863 + DDA3937_RS03470 0.19 -0.7
759,900 - DDA3937_RS03470 0.22 -0.3
759,900 - DDA3937_RS03470 0.22 -0.4
759,900 - DDA3937_RS03470 0.22 +0.9
759,964 - DDA3937_RS03470 0.26 -0.0
760,030 + DDA3937_RS03470 0.30 +0.7
760,031 - DDA3937_RS03470 0.30 +0.1
760,031 - DDA3937_RS03470 0.30 -1.5
760,031 - DDA3937_RS03470 0.30 -0.5
760,115 + DDA3937_RS03470 0.35 +0.2
760,116 - DDA3937_RS03470 0.35 +0.2
760,268 - DDA3937_RS03470 0.44 +1.3
760,268 - DDA3937_RS03470 0.44 -0.6
760,273 + DDA3937_RS03470 0.44 -0.2
760,273 + DDA3937_RS03470 0.44 +0.8
760,274 - DDA3937_RS03470 0.44 -0.0
760,350 + DDA3937_RS03470 0.49 -0.6
760,350 + DDA3937_RS03470 0.49 +0.2
760,350 + DDA3937_RS03470 0.49 -0.0
760,350 + DDA3937_RS03470 0.49 +0.7
760,350 + DDA3937_RS03470 0.49 -0.8
760,350 + DDA3937_RS03470 0.49 -0.8
760,350 + DDA3937_RS03470 0.49 -0.6
760,350 + DDA3937_RS03470 0.49 -1.8
760,350 + DDA3937_RS03470 0.49 -0.7
760,350 + DDA3937_RS03470 0.49 -0.1
760,350 + DDA3937_RS03470 0.49 +0.0
760,350 + DDA3937_RS03470 0.49 +0.2
760,350 + DDA3937_RS03470 0.49 -0.1
760,350 + DDA3937_RS03470 0.49 -1.9
760,350 + DDA3937_RS03470 0.49 -2.3
760,351 - DDA3937_RS03470 0.49 +0.5
760,351 - DDA3937_RS03470 0.49 -1.7
760,351 - DDA3937_RS03470 0.49 -0.1
760,351 - DDA3937_RS03470 0.49 -1.3
760,351 - DDA3937_RS03470 0.49 +1.0
760,351 - DDA3937_RS03470 0.49 +0.1
760,352 + DDA3937_RS03470 0.49 -0.5
760,352 + DDA3937_RS03470 0.49 +0.3
760,352 + DDA3937_RS03470 0.49 -2.0
760,353 - DDA3937_RS03470 0.49 +0.1
760,353 - DDA3937_RS03470 0.49 +0.3
760,353 - DDA3937_RS03470 0.49 -0.7
760,353 - DDA3937_RS03470 0.49 -0.6
760,448 + DDA3937_RS03470 0.55 -0.1

Or see this region's nucleotide sequence