Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03455 and DDA3937_RS03460 are separated by 805 nucleotides DDA3937_RS03460 and DDA3937_RS03465 are separated by 221 nucleotides
DDA3937_RS03455: DDA3937_RS03455 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 754,532 to 755,452
_RS03455
DDA3937_RS03460: DDA3937_RS03460 - NCS2 family permease, at 756,258 to 757,625
_RS03460
DDA3937_RS03465: DDA3937_RS03465 - Na+/H+ antiporter, at 757,847 to 759,493
_RS03465
Position (kb) 756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 755.342 kb on + strand, within DDA3937_RS03455 at 755.342 kb on + strand, within DDA3937_RS03455 at 755.342 kb on + strand, within DDA3937_RS03455 at 755.343 kb on - strand, within DDA3937_RS03455 at 755.343 kb on - strand, within DDA3937_RS03455 at 755.390 kb on + strand at 755.390 kb on + strand at 755.390 kb on + strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.395 kb on - strand at 755.444 kb on + strand at 755.444 kb on + strand at 755.494 kb on + strand at 755.494 kb on + strand at 755.495 kb on - strand at 755.541 kb on - strand at 755.597 kb on + strand at 755.597 kb on + strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.623 kb on + strand at 755.624 kb on - strand at 755.624 kb on - strand at 755.633 kb on - strand at 755.646 kb on - strand at 755.682 kb on - strand at 755.716 kb on + strand at 755.716 kb on + strand at 755.716 kb on + strand at 755.716 kb on + strand at 755.717 kb on - strand at 755.760 kb on + strand at 755.761 kb on - strand at 755.761 kb on - strand at 755.821 kb on + strand at 755.848 kb on + strand at 755.943 kb on + strand at 755.944 kb on - strand at 755.978 kb on + strand at 755.978 kb on + strand at 756.054 kb on + strand at 756.135 kb on + strand at 756.136 kb on - strand at 756.216 kb on - strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.221 kb on + strand at 756.222 kb on - strand at 756.231 kb on + strand at 756.231 kb on + strand at 756.266 kb on + strand at 756.329 kb on + strand at 756.329 kb on + strand at 756.361 kb on + strand at 756.362 kb on - strand at 756.428 kb on + strand, within DDA3937_RS03460 at 756.587 kb on + strand, within DDA3937_RS03460 at 756.587 kb on + strand, within DDA3937_RS03460 at 756.632 kb on - strand, within DDA3937_RS03460 at 756.740 kb on + strand, within DDA3937_RS03460 at 756.741 kb on - strand, within DDA3937_RS03460 at 756.952 kb on - strand, within DDA3937_RS03460 at 756.952 kb on - strand, within DDA3937_RS03460 at 757.233 kb on + strand, within DDA3937_RS03460 at 757.234 kb on - strand, within DDA3937_RS03460 at 757.339 kb on - strand, within DDA3937_RS03460 at 757.339 kb on - strand, within DDA3937_RS03460 at 757.339 kb on - strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.377 kb on + strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.378 kb on - strand, within DDA3937_RS03460 at 757.481 kb on + strand, within DDA3937_RS03460 at 757.482 kb on - strand, within DDA3937_RS03460 at 757.482 kb on - strand, within DDA3937_RS03460 at 757.602 kb on + strand at 757.603 kb on - strand at 757.650 kb on - strand at 757.675 kb on + strand at 757.687 kb on - strand at 757.744 kb on - strand at 757.744 kb on - strand at 757.744 kb on - strand at 757.744 kb on - strand at 757.755 kb on - strand at 757.823 kb on + strand at 757.823 kb on + strand at 757.823 kb on + strand at 757.824 kb on - strand at 757.874 kb on - strand at 757.874 kb on - strand at 757.902 kb on + strand at 758.017 kb on + strand, within DDA3937_RS03465 at 758.089 kb on + strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.090 kb on - strand, within DDA3937_RS03465 at 758.118 kb on + strand, within DDA3937_RS03465 at 758.151 kb on - strand, within DDA3937_RS03465 at 758.151 kb on - strand, within DDA3937_RS03465 at 758.154 kb on + strand, within DDA3937_RS03465 at 758.154 kb on + strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.155 kb on - strand, within DDA3937_RS03465 at 758.289 kb on + strand, within DDA3937_RS03465 at 758.374 kb on + strand, within DDA3937_RS03465 at 758.454 kb on - strand, within DDA3937_RS03465 at 758.459 kb on - strand, within DDA3937_RS03465 at 758.517 kb on + strand at 758.544 kb on - strand, within DDA3937_RS03465 at 758.605 kb on + strand, within DDA3937_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 755,342 + DDA3937_RS03455 0.88 +0.2 755,342 + DDA3937_RS03455 0.88 -0.5 755,342 + DDA3937_RS03455 0.88 -0.2 755,343 - DDA3937_RS03455 0.88 -0.5 755,343 - DDA3937_RS03455 0.88 -0.9 755,390 + -1.5 755,390 + -0.5 755,390 + +0.2 755,391 - +0.4 755,391 - -0.0 755,391 - +0.2 755,391 - +0.6 755,391 - -0.1 755,394 + -1.2 755,394 + -1.1 755,394 + -1.9 755,394 + -1.1 755,394 + -0.5 755,394 + -0.9 755,395 - -0.9 755,444 + -0.5 755,444 + -1.5 755,494 + +0.3 755,494 + -0.9 755,495 - -0.5 755,541 - -1.4 755,597 + +1.2 755,597 + -1.0 755,598 - -0.3 755,598 - -2.3 755,598 - +1.1 755,598 - -1.6 755,598 - -1.5 755,623 + -1.2 755,624 - +1.1 755,624 - -2.2 755,633 - +0.7 755,646 - +0.5 755,682 - -1.5 755,716 + +0.2 755,716 + +0.3 755,716 + -0.2 755,716 + -0.4 755,717 - +1.1 755,760 + -0.4 755,761 - -1.2 755,761 - +0.2 755,821 + +0.1 755,848 + -0.3 755,943 + -0.5 755,944 - -0.5 755,978 + -1.0 755,978 + +1.1 756,054 + +0.3 756,135 + -0.3 756,136 - -0.1 756,216 - +2.7 756,219 + -0.5 756,219 + -1.8 756,219 + +0.6 756,219 + -0.2 756,220 - -0.0 756,220 - -0.1 756,220 - -0.3 756,220 - -1.6 756,220 - +0.9 756,221 + -0.4 756,222 - -1.7 756,231 + -0.5 756,231 + -3.0 756,266 + -0.1 756,329 + +1.3 756,329 + -0.4 756,361 + -0.4 756,362 - -1.2 756,428 + DDA3937_RS03460 0.12 +0.3 756,587 + DDA3937_RS03460 0.24 +0.3 756,587 + DDA3937_RS03460 0.24 +0.9 756,632 - DDA3937_RS03460 0.27 -1.7 756,740 + DDA3937_RS03460 0.35 +0.4 756,741 - DDA3937_RS03460 0.35 +0.2 756,952 - DDA3937_RS03460 0.51 +2.4 756,952 - DDA3937_RS03460 0.51 +1.8 757,233 + DDA3937_RS03460 0.71 -0.2 757,234 - DDA3937_RS03460 0.71 -0.5 757,339 - DDA3937_RS03460 0.79 -0.6 757,339 - DDA3937_RS03460 0.79 -0.5 757,339 - DDA3937_RS03460 0.79 +4.1 757,377 + DDA3937_RS03460 0.82 -2.3 757,377 + +1.7 757,377 + DDA3937_RS03460 0.82 -2.5 757,377 + DDA3937_RS03460 0.82 -0.9 757,377 + DDA3937_RS03460 0.82 -0.6 757,377 + DDA3937_RS03460 0.82 +0.2 757,377 + DDA3937_RS03460 0.82 +0.1 757,377 + DDA3937_RS03460 0.82 -0.1 757,377 + DDA3937_RS03460 0.82 -0.5 757,378 - DDA3937_RS03460 0.82 -0.5 757,378 - DDA3937_RS03460 0.82 -1.1 757,378 - DDA3937_RS03460 0.82 -0.1 757,378 - DDA3937_RS03460 0.82 -0.4 757,378 - DDA3937_RS03460 0.82 -0.4 757,378 - DDA3937_RS03460 0.82 -1.0 757,378 - DDA3937_RS03460 0.82 +1.1 757,481 + DDA3937_RS03460 0.89 -0.2 757,482 - DDA3937_RS03460 0.89 +0.3 757,482 - DDA3937_RS03460 0.89 -2.9 757,602 + -0.2 757,603 - +0.1 757,650 - -0.3 757,675 + +0.2 757,687 - -0.4 757,744 - +0.6 757,744 - +0.8 757,744 - +0.1 757,744 - -0.4 757,755 - -0.4 757,823 + -0.6 757,823 + -1.0 757,823 + -0.8 757,824 - -0.7 757,874 - -2.2 757,874 - -2.2 757,902 + -1.1 758,017 + DDA3937_RS03465 0.10 -1.2 758,089 + DDA3937_RS03465 0.15 -1.5 758,090 - DDA3937_RS03465 0.15 -0.2 758,090 - DDA3937_RS03465 0.15 -0.7 758,090 - DDA3937_RS03465 0.15 -1.8 758,090 - DDA3937_RS03465 0.15 -3.0 758,118 + DDA3937_RS03465 0.16 -1.4 758,151 - DDA3937_RS03465 0.18 -0.2 758,151 - DDA3937_RS03465 0.18 +1.1 758,154 + DDA3937_RS03465 0.19 -1.8 758,154 + DDA3937_RS03465 0.19 -1.3 758,155 - DDA3937_RS03465 0.19 -0.9 758,155 - DDA3937_RS03465 0.19 +0.6 758,155 - DDA3937_RS03465 0.19 -0.5 758,155 - DDA3937_RS03465 0.19 -2.5 758,155 - DDA3937_RS03465 0.19 -2.9 758,289 + DDA3937_RS03465 0.27 -1.5 758,374 + DDA3937_RS03465 0.32 -0.2 758,454 - DDA3937_RS03465 0.37 -1.5 758,459 - DDA3937_RS03465 0.37 -0.1 758,517 + +2.1 758,544 - DDA3937_RS03465 0.42 -2.1 758,605 + DDA3937_RS03465 0.46 -1.0
Or see this region's nucleotide sequence