Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03340 and DDA3937_RS03345 are separated by 399 nucleotides DDA3937_RS03345 and DDA3937_RS03350 are separated by 125 nucleotides DDA3937_RS03350 and DDA3937_RS03355 are separated by 85 nucleotides
DDA3937_RS03340: DDA3937_RS03340 - phosphoesterase, at 730,230 to 731,657
_RS03340
DDA3937_RS03345: DDA3937_RS03345 - helix-turn-helix transcriptional regulator, at 732,057 to 732,812
_RS03345
DDA3937_RS03350: DDA3937_RS03350 - LysE family transporter, at 732,938 to 733,609
_RS03350
DDA3937_RS03355: DDA3937_RS03355 - tRNA-Gly, at 733,695 to 733,768
_RS03355
Position (kb) 732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.192 kb on - strand, within DDA3937_RS03340 at 731.235 kb on - strand, within DDA3937_RS03340 at 731.249 kb on + strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.315 kb on - strand, within DDA3937_RS03340 at 731.320 kb on + strand, within DDA3937_RS03340 at 731.321 kb on - strand, within DDA3937_RS03340 at 731.404 kb on + strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.435 kb on + strand, within DDA3937_RS03340 at 731.436 kb on - strand, within DDA3937_RS03340 at 731.440 kb on + strand, within DDA3937_RS03340 at 731.472 kb on + strand, within DDA3937_RS03340 at 731.473 kb on - strand, within DDA3937_RS03340 at 731.586 kb on - strand at 731.625 kb on - strand at 731.652 kb on - strand at 731.764 kb on + strand at 731.764 kb on + strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.797 kb on + strand at 731.797 kb on + strand at 731.798 kb on - strand at 731.798 kb on - strand at 731.845 kb on - strand at 731.853 kb on + strand at 732.022 kb on + strand at 732.066 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.072 kb on - strand at 732.072 kb on - strand at 732.225 kb on + strand, within DDA3937_RS03345 at 732.225 kb on + strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.227 kb on + strand, within DDA3937_RS03345 at 732.228 kb on - strand, within DDA3937_RS03345 at 732.288 kb on + strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.315 kb on + strand, within DDA3937_RS03345 at 732.516 kb on - strand, within DDA3937_RS03345 at 732.615 kb on - strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.630 kb on - strand, within DDA3937_RS03345 at 732.662 kb on + strand, within DDA3937_RS03345 at 732.662 kb on + strand, within DDA3937_RS03345 at 732.662 kb on + strand, within DDA3937_RS03345 at 732.678 kb on - strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.701 kb on + strand, within DDA3937_RS03345 at 732.702 kb on - strand, within DDA3937_RS03345 at 732.770 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.816 kb on + strand at 732.817 kb on - strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.853 kb on + strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.854 kb on - strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.874 kb on - strand at 732.890 kb on + strand at 732.923 kb on + strand at 732.924 kb on - strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.937 kb on + strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.938 kb on - strand at 732.942 kb on + strand at 732.942 kb on + strand at 733.006 kb on + strand, within DDA3937_RS03350 at 733.016 kb on - strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.133 kb on + strand, within DDA3937_RS03350 at 733.134 kb on - strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.135 kb on + strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.136 kb on - strand, within DDA3937_RS03350 at 733.144 kb on - strand, within DDA3937_RS03350 at 733.345 kb on - strand, within DDA3937_RS03350 at 733.458 kb on + strand, within DDA3937_RS03350 at 733.474 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.518 kb on - strand, within DDA3937_RS03350 at 733.580 kb on + strand at 733.621 kb on - strand at 733.673 kb on + strand at 733.674 kb on - strand at 733.675 kb on + strand at 733.675 kb on + strand at 733.676 kb on - strand at 733.702 kb on + strand at 733.713 kb on + strand, within DDA3937_RS03355 at 733.714 kb on - strand at 733.714 kb on - strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.736 kb on + strand, within DDA3937_RS03355 at 733.737 kb on - strand, within DDA3937_RS03355 at 733.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 731,080 + DDA3937_RS03340 0.60 -0.4 731,080 + DDA3937_RS03340 0.60 +0.7 731,080 + DDA3937_RS03340 0.60 -1.2 731,081 - DDA3937_RS03340 0.60 -1.1 731,081 - DDA3937_RS03340 0.60 +0.1 731,081 - DDA3937_RS03340 0.60 -0.4 731,081 - DDA3937_RS03340 0.60 -0.3 731,192 - DDA3937_RS03340 0.67 +0.6 731,235 - DDA3937_RS03340 0.70 -0.6 731,249 + DDA3937_RS03340 0.71 -0.7 731,250 - DDA3937_RS03340 0.71 +0.4 731,250 - DDA3937_RS03340 0.71 -0.9 731,315 - DDA3937_RS03340 0.76 -0.4 731,320 + DDA3937_RS03340 0.76 +0.4 731,321 - DDA3937_RS03340 0.76 -0.2 731,404 + DDA3937_RS03340 0.82 -0.1 731,408 - DDA3937_RS03340 0.82 -0.4 731,408 - DDA3937_RS03340 0.82 -0.7 731,435 + DDA3937_RS03340 0.84 -0.4 731,436 - DDA3937_RS03340 0.84 +0.4 731,440 + DDA3937_RS03340 0.85 -0.4 731,472 + DDA3937_RS03340 0.87 -0.6 731,473 - DDA3937_RS03340 0.87 +0.6 731,586 - -1.5 731,625 - -1.0 731,652 - -0.1 731,764 + -1.5 731,764 + -0.1 731,765 - +0.2 731,765 - -0.6 731,765 - +0.5 731,797 + +0.8 731,797 + -0.8 731,798 - -0.1 731,798 - -1.7 731,845 - +0.6 731,853 + -0.4 732,022 + -1.4 732,066 + -0.3 732,071 + -0.4 732,071 + -1.6 732,071 + -0.2 732,072 - +2.7 732,072 - +0.8 732,225 + DDA3937_RS03345 0.22 -0.5 732,225 + DDA3937_RS03345 0.22 -0.7 732,226 - DDA3937_RS03345 0.22 -0.1 732,226 - DDA3937_RS03345 0.22 -0.9 732,226 - DDA3937_RS03345 0.22 -1.2 732,226 - DDA3937_RS03345 0.22 -0.6 732,227 + DDA3937_RS03345 0.22 -0.4 732,228 - DDA3937_RS03345 0.23 -1.2 732,288 + DDA3937_RS03345 0.31 +1.1 732,289 - DDA3937_RS03345 0.31 +1.3 732,289 - DDA3937_RS03345 0.31 -0.9 732,289 - DDA3937_RS03345 0.31 +0.4 732,289 - DDA3937_RS03345 0.31 -0.3 732,315 + DDA3937_RS03345 0.34 -0.1 732,516 - DDA3937_RS03345 0.61 -0.9 732,615 - DDA3937_RS03345 0.74 -0.6 732,629 + DDA3937_RS03345 0.76 -1.0 732,629 + DDA3937_RS03345 0.76 +0.2 732,629 + DDA3937_RS03345 0.76 +0.1 732,630 - DDA3937_RS03345 0.76 -1.1 732,662 + DDA3937_RS03345 0.80 -2.0 732,662 + DDA3937_RS03345 0.80 -0.7 732,662 + DDA3937_RS03345 0.80 -1.0 732,678 - DDA3937_RS03345 0.82 +0.6 732,701 + DDA3937_RS03345 0.85 -0.7 732,701 + DDA3937_RS03345 0.85 -1.1 732,701 + DDA3937_RS03345 0.85 -0.1 732,702 - DDA3937_RS03345 0.85 +0.1 732,770 + -0.6 732,816 + -1.3 732,816 + -1.5 732,816 + -1.0 732,816 + -0.8 732,816 + -0.2 732,817 - -1.1 732,853 + -0.1 732,853 + -0.2 732,853 + -0.5 732,853 + -0.1 732,853 + -0.7 732,853 + -0.5 732,854 - -0.0 732,854 - -1.2 732,854 - -0.7 732,854 - -0.4 732,873 + -1.3 732,873 + -0.3 732,873 + -0.3 732,873 + -0.7 732,874 - +0.6 732,874 - -0.4 732,874 - -0.1 732,890 + -0.3 732,923 + -0.1 732,924 - +2.6 732,937 + -1.1 732,937 + -1.9 732,937 + -0.1 732,937 + +0.5 732,937 + +0.0 732,937 + -0.4 732,937 + -0.7 732,937 + -0.4 732,937 + +1.0 732,937 + +0.3 732,937 + -0.2 732,937 + -0.2 732,938 - -1.7 732,938 - -0.4 732,938 - +0.6 732,938 - +1.6 732,938 - +0.5 732,938 - -1.2 732,938 - +0.3 732,938 - -0.4 732,938 - -0.6 732,942 + -0.1 732,942 + +0.1 733,006 + DDA3937_RS03350 0.10 +2.3 733,016 - DDA3937_RS03350 0.12 -0.1 733,133 + DDA3937_RS03350 0.29 -1.4 733,133 + DDA3937_RS03350 0.29 -0.2 733,133 + DDA3937_RS03350 0.29 +0.0 733,133 + DDA3937_RS03350 0.29 -0.0 733,133 + DDA3937_RS03350 0.29 -0.2 733,133 + DDA3937_RS03350 0.29 -0.3 733,133 + DDA3937_RS03350 0.29 -0.5 733,133 + DDA3937_RS03350 0.29 +0.8 733,133 + DDA3937_RS03350 0.29 +1.4 733,133 + DDA3937_RS03350 0.29 -0.4 733,133 + DDA3937_RS03350 0.29 -0.6 733,133 + DDA3937_RS03350 0.29 +1.3 733,133 + DDA3937_RS03350 0.29 -0.4 733,134 - DDA3937_RS03350 0.29 -0.1 733,135 + DDA3937_RS03350 0.29 +1.1 733,135 + DDA3937_RS03350 0.29 -1.2 733,135 + DDA3937_RS03350 0.29 -0.0 733,136 - DDA3937_RS03350 0.29 +0.9 733,136 - DDA3937_RS03350 0.29 -2.0 733,144 - DDA3937_RS03350 0.31 -0.1 733,345 - DDA3937_RS03350 0.61 -0.2 733,458 + DDA3937_RS03350 0.77 -0.2 733,474 - DDA3937_RS03350 0.80 +0.3 733,518 - DDA3937_RS03350 0.86 +0.3 733,518 - DDA3937_RS03350 0.86 -1.4 733,580 + +0.3 733,621 - +0.1 733,673 + -0.3 733,674 - +0.0 733,675 + -1.2 733,675 + -0.4 733,676 - +1.3 733,702 + -0.4 733,713 + DDA3937_RS03355 0.24 -0.4 733,714 - -1.2 733,714 - DDA3937_RS03355 0.26 -0.3 733,736 + DDA3937_RS03355 0.55 -0.4 733,736 + DDA3937_RS03355 0.55 -1.4 733,737 - DDA3937_RS03355 0.57 +1.1 733,798 - -0.4
Or see this region's nucleotide sequence