Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02580 and DDA3937_RS02585 are separated by 13 nucleotides DDA3937_RS02585 and DDA3937_RS02590 overlap by 4 nucleotides
DDA3937_RS02580: DDA3937_RS02580 - polysaccharide biosynthesis tyrosine autokinase, at 571,011 to 573,143
_RS02580
DDA3937_RS02585: DDA3937_RS02585 - oligosaccharide flippase family protein, at 573,157 to 574,368
_RS02585
DDA3937_RS02590: DDA3937_RS02590 - hypothetical protein, at 574,365 to 575,747
_RS02590
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.168 kb on + strand, within DDA3937_RS02580 at 572.168 kb on + strand, within DDA3937_RS02580 at 572.169 kb on - strand, within DDA3937_RS02580 at 572.169 kb on - strand, within DDA3937_RS02580 at 572.178 kb on + strand, within DDA3937_RS02580 at 572.179 kb on - strand, within DDA3937_RS02580 at 572.179 kb on - strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.218 kb on + strand, within DDA3937_RS02580 at 572.233 kb on + strand, within DDA3937_RS02580 at 572.233 kb on + strand, within DDA3937_RS02580 at 572.233 kb on + strand, within DDA3937_RS02580 at 572.234 kb on - strand, within DDA3937_RS02580 at 572.238 kb on + strand, within DDA3937_RS02580 at 572.238 kb on + strand, within DDA3937_RS02580 at 572.238 kb on + strand, within DDA3937_RS02580 at 572.279 kb on + strand, within DDA3937_RS02580 at 572.280 kb on - strand, within DDA3937_RS02580 at 572.311 kb on + strand, within DDA3937_RS02580 at 572.311 kb on + strand, within DDA3937_RS02580 at 572.334 kb on + strand, within DDA3937_RS02580 at 572.335 kb on - strand, within DDA3937_RS02580 at 572.461 kb on + strand, within DDA3937_RS02580 at 572.759 kb on + strand, within DDA3937_RS02580 at 572.760 kb on - strand, within DDA3937_RS02580 at 572.773 kb on + strand at 572.773 kb on + strand, within DDA3937_RS02580 at 572.774 kb on - strand, within DDA3937_RS02580 at 572.774 kb on - strand, within DDA3937_RS02580 at 572.868 kb on + strand, within DDA3937_RS02580 at 572.879 kb on + strand, within DDA3937_RS02580 at 572.879 kb on + strand, within DDA3937_RS02580 at 572.879 kb on + strand, within DDA3937_RS02580 at 572.880 kb on - strand, within DDA3937_RS02580 at 572.938 kb on + strand at 573.011 kb on - strand at 573.088 kb on + strand at 573.088 kb on + strand at 573.089 kb on - strand at 573.165 kb on - strand at 573.165 kb on - strand at 573.228 kb on + strand at 573.250 kb on + strand at 573.251 kb on - strand at 573.251 kb on - strand at 573.251 kb on - strand at 573.274 kb on + strand at 573.275 kb on - strand at 573.286 kb on + strand, within DDA3937_RS02585 at 573.286 kb on + strand, within DDA3937_RS02585 at 573.287 kb on - strand, within DDA3937_RS02585 at 573.287 kb on - strand, within DDA3937_RS02585 at 573.287 kb on - strand, within DDA3937_RS02585 at 573.318 kb on + strand, within DDA3937_RS02585 at 573.319 kb on - strand, within DDA3937_RS02585 at 573.466 kb on + strand, within DDA3937_RS02585 at 573.467 kb on - strand, within DDA3937_RS02585 at 573.467 kb on - strand, within DDA3937_RS02585 at 573.484 kb on + strand, within DDA3937_RS02585 at 573.484 kb on + strand, within DDA3937_RS02585 at 573.528 kb on + strand, within DDA3937_RS02585 at 573.528 kb on + strand, within DDA3937_RS02585 at 573.529 kb on - strand, within DDA3937_RS02585 at 573.660 kb on + strand, within DDA3937_RS02585 at 573.660 kb on + strand, within DDA3937_RS02585 at 573.661 kb on - strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.792 kb on + strand, within DDA3937_RS02585 at 573.793 kb on - strand, within DDA3937_RS02585 at 573.795 kb on + strand, within DDA3937_RS02585 at 573.808 kb on - strand, within DDA3937_RS02585 at 573.816 kb on + strand, within DDA3937_RS02585 at 573.909 kb on + strand, within DDA3937_RS02585 at 573.989 kb on + strand, within DDA3937_RS02585 at 574.026 kb on - strand, within DDA3937_RS02585 at 574.100 kb on - strand, within DDA3937_RS02585 at 574.116 kb on - strand, within DDA3937_RS02585 at 574.217 kb on + strand, within DDA3937_RS02585 at 574.326 kb on + strand at 574.350 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.398 kb on + strand at 574.398 kb on + strand at 574.417 kb on + strand at 574.476 kb on - strand at 574.526 kb on + strand, within DDA3937_RS02590 at 574.527 kb on - strand, within DDA3937_RS02590 at 574.527 kb on - strand, within DDA3937_RS02590 at 574.597 kb on + strand, within DDA3937_RS02590 at 574.601 kb on + strand, within DDA3937_RS02590 at 574.602 kb on - strand, within DDA3937_RS02590 at 574.602 kb on - strand, within DDA3937_RS02590 at 574.610 kb on - strand, within DDA3937_RS02590 at 574.621 kb on + strand, within DDA3937_RS02590 at 574.629 kb on - strand, within DDA3937_RS02590 at 574.631 kb on + strand, within DDA3937_RS02590 at 574.734 kb on + strand, within DDA3937_RS02590 at 574.735 kb on - strand, within DDA3937_RS02590 at 574.746 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.771 kb on - strand, within DDA3937_RS02590 at 574.878 kb on - strand, within DDA3937_RS02590 at 574.910 kb on + strand, within DDA3937_RS02590 at 574.911 kb on - strand, within DDA3937_RS02590 at 574.935 kb on - strand, within DDA3937_RS02590 at 575.070 kb on + strand, within DDA3937_RS02590 at 575.073 kb on - strand, within DDA3937_RS02590 at 575.074 kb on + strand, within DDA3937_RS02590 at 575.075 kb on - strand, within DDA3937_RS02590 at 575.092 kb on + strand, within DDA3937_RS02590 at 575.256 kb on + strand, within DDA3937_RS02590 at 575.259 kb on - strand at 575.288 kb on + strand, within DDA3937_RS02590 at 575.296 kb on + strand, within DDA3937_RS02590 at 575.360 kb on - strand, within DDA3937_RS02590
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 572,166 + DDA3937_RS02580 0.54 -0.5 572,166 + DDA3937_RS02580 0.54 -1.1 572,166 + DDA3937_RS02580 0.54 -0.4 572,166 + DDA3937_RS02580 0.54 -0.1 572,166 + +1.8 572,166 + DDA3937_RS02580 0.54 -2.7 572,166 + DDA3937_RS02580 0.54 -2.5 572,166 + DDA3937_RS02580 0.54 -0.2 572,166 + DDA3937_RS02580 0.54 +0.4 572,167 - DDA3937_RS02580 0.54 +1.2 572,167 - DDA3937_RS02580 0.54 -2.3 572,167 - DDA3937_RS02580 0.54 -0.6 572,167 - DDA3937_RS02580 0.54 +3.3 572,167 - DDA3937_RS02580 0.54 -1.3 572,167 - DDA3937_RS02580 0.54 +0.3 572,167 - DDA3937_RS02580 0.54 -0.0 572,167 - DDA3937_RS02580 0.54 -0.5 572,167 - DDA3937_RS02580 0.54 -1.4 572,168 + DDA3937_RS02580 0.54 +0.6 572,168 + DDA3937_RS02580 0.54 -0.0 572,169 - DDA3937_RS02580 0.54 +1.4 572,169 - DDA3937_RS02580 0.54 -0.6 572,178 + DDA3937_RS02580 0.55 -0.8 572,179 - DDA3937_RS02580 0.55 -1.8 572,179 - DDA3937_RS02580 0.55 -0.1 572,214 + DDA3937_RS02580 0.56 +0.8 572,214 + DDA3937_RS02580 0.56 +0.1 572,214 + DDA3937_RS02580 0.56 -0.4 572,214 + DDA3937_RS02580 0.56 +0.3 572,214 + DDA3937_RS02580 0.56 -0.4 572,215 - DDA3937_RS02580 0.56 -0.2 572,215 - DDA3937_RS02580 0.56 -0.4 572,215 - DDA3937_RS02580 0.56 +0.2 572,215 - DDA3937_RS02580 0.56 -0.4 572,215 - DDA3937_RS02580 0.56 -2.3 572,215 - DDA3937_RS02580 0.56 -0.1 572,215 - DDA3937_RS02580 0.56 -1.3 572,218 + DDA3937_RS02580 0.57 -0.7 572,233 + DDA3937_RS02580 0.57 -0.4 572,233 + DDA3937_RS02580 0.57 -0.4 572,233 + DDA3937_RS02580 0.57 -0.5 572,234 - DDA3937_RS02580 0.57 +0.2 572,238 + DDA3937_RS02580 0.58 +0.6 572,238 + DDA3937_RS02580 0.58 -1.2 572,238 + DDA3937_RS02580 0.58 +0.6 572,279 + DDA3937_RS02580 0.59 +0.2 572,280 - DDA3937_RS02580 0.59 +3.7 572,311 + DDA3937_RS02580 0.61 -2.5 572,311 + DDA3937_RS02580 0.61 -1.4 572,334 + DDA3937_RS02580 0.62 -1.0 572,335 - DDA3937_RS02580 0.62 +1.2 572,461 + DDA3937_RS02580 0.68 -0.5 572,759 + DDA3937_RS02580 0.82 -0.5 572,760 - DDA3937_RS02580 0.82 -0.7 572,773 + -1.1 572,773 + DDA3937_RS02580 0.83 -2.4 572,774 - DDA3937_RS02580 0.83 -1.8 572,774 - DDA3937_RS02580 0.83 +0.4 572,868 + DDA3937_RS02580 0.87 +2.4 572,879 + DDA3937_RS02580 0.88 -1.0 572,879 + DDA3937_RS02580 0.88 -0.3 572,879 + DDA3937_RS02580 0.88 -1.0 572,880 - DDA3937_RS02580 0.88 -1.4 572,938 + -0.7 573,011 - -0.5 573,088 + -0.0 573,088 + -0.3 573,089 - +0.0 573,165 - +0.2 573,165 - -2.7 573,228 + -0.6 573,250 + -0.5 573,251 - -0.8 573,251 - +0.3 573,251 - -0.7 573,274 + -1.4 573,275 - -2.5 573,286 + DDA3937_RS02585 0.11 -2.0 573,286 + DDA3937_RS02585 0.11 -0.2 573,287 - DDA3937_RS02585 0.11 -1.2 573,287 - DDA3937_RS02585 0.11 -0.9 573,287 - DDA3937_RS02585 0.11 -2.1 573,318 + DDA3937_RS02585 0.13 -1.4 573,319 - DDA3937_RS02585 0.13 -1.1 573,466 + DDA3937_RS02585 0.25 -0.7 573,467 - DDA3937_RS02585 0.26 -2.5 573,467 - DDA3937_RS02585 0.26 +0.9 573,484 + DDA3937_RS02585 0.27 -1.0 573,484 + DDA3937_RS02585 0.27 -1.1 573,528 + DDA3937_RS02585 0.31 -0.4 573,528 + DDA3937_RS02585 0.31 -0.8 573,529 - DDA3937_RS02585 0.31 -2.6 573,660 + DDA3937_RS02585 0.42 -0.3 573,660 + DDA3937_RS02585 0.42 -1.4 573,661 - DDA3937_RS02585 0.42 -0.2 573,789 + DDA3937_RS02585 0.52 -0.4 573,789 + DDA3937_RS02585 0.52 -0.9 573,789 + DDA3937_RS02585 0.52 -1.1 573,792 + DDA3937_RS02585 0.52 -0.3 573,793 - DDA3937_RS02585 0.52 +0.3 573,795 + DDA3937_RS02585 0.53 -1.7 573,808 - DDA3937_RS02585 0.54 -0.9 573,816 + DDA3937_RS02585 0.54 -2.4 573,909 + DDA3937_RS02585 0.62 -0.5 573,989 + DDA3937_RS02585 0.69 -0.6 574,026 - DDA3937_RS02585 0.72 -1.2 574,100 - DDA3937_RS02585 0.78 -3.1 574,116 - DDA3937_RS02585 0.79 -1.4 574,217 + DDA3937_RS02585 0.87 -0.6 574,326 + -0.4 574,350 + +0.3 574,386 + -0.2 574,386 + +1.2 574,398 + -1.6 574,398 + +0.9 574,417 + -0.3 574,476 - -1.3 574,526 + DDA3937_RS02590 0.12 -0.6 574,527 - DDA3937_RS02590 0.12 -0.1 574,527 - DDA3937_RS02590 0.12 +0.2 574,597 + DDA3937_RS02590 0.17 +0.9 574,601 + DDA3937_RS02590 0.17 +0.2 574,602 - DDA3937_RS02590 0.17 +0.3 574,602 - DDA3937_RS02590 0.17 -0.4 574,610 - DDA3937_RS02590 0.18 -0.3 574,621 + DDA3937_RS02590 0.19 -1.2 574,629 - DDA3937_RS02590 0.19 +2.3 574,631 + DDA3937_RS02590 0.19 +0.8 574,734 + DDA3937_RS02590 0.27 -2.6 574,735 - DDA3937_RS02590 0.27 +0.2 574,746 + DDA3937_RS02590 0.28 +0.2 574,770 + DDA3937_RS02590 0.29 -0.5 574,770 + DDA3937_RS02590 0.29 -0.2 574,771 - DDA3937_RS02590 0.29 +0.8 574,878 - DDA3937_RS02590 0.37 -1.7 574,910 + DDA3937_RS02590 0.39 +0.0 574,911 - DDA3937_RS02590 0.39 -0.2 574,935 - DDA3937_RS02590 0.41 -0.6 575,070 + DDA3937_RS02590 0.51 -0.4 575,073 - DDA3937_RS02590 0.51 -0.9 575,074 + DDA3937_RS02590 0.51 -0.3 575,075 - DDA3937_RS02590 0.51 -0.8 575,092 + DDA3937_RS02590 0.53 -1.4 575,256 + DDA3937_RS02590 0.64 -1.0 575,259 - +0.2 575,288 + DDA3937_RS02590 0.67 -0.7 575,296 + DDA3937_RS02590 0.67 -0.4 575,360 - DDA3937_RS02590 0.72 -0.1
Or see this region's nucleotide sequence