Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02420 and DDA3937_RS02425 are separated by 80 nucleotides DDA3937_RS02425 and DDA3937_RS02430 are separated by 129 nucleotides DDA3937_RS02430 and DDA3937_RS02435 are separated by 14 nucleotides
DDA3937_RS02420: DDA3937_RS02420 - DNA repair protein RadA, at 535,647 to 537,032
_RS02420
DDA3937_RS02425: DDA3937_RS02425 - phosphoserine phosphatase, at 537,113 to 538,090
_RS02425
DDA3937_RS02430: DDA3937_RS02430 - YtjB family periplasmic protein, at 538,220 to 538,900
_RS02430
DDA3937_RS02435: DDA3937_RS02435 - trans-aconitate 2-methyltransferase, at 538,915 to 539,691
_RS02435
Position (kb) 537
538
539 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 536.124 kb on + strand, within DDA3937_RS02420 at 536.124 kb on + strand, within DDA3937_RS02420 at 536.124 kb on + strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.125 kb on - strand, within DDA3937_RS02420 at 536.223 kb on + strand, within DDA3937_RS02420 at 536.322 kb on - strand, within DDA3937_RS02420 at 536.322 kb on - strand, within DDA3937_RS02420 at 536.422 kb on + strand, within DDA3937_RS02420 at 536.650 kb on + strand, within DDA3937_RS02420 at 536.650 kb on + strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.651 kb on - strand, within DDA3937_RS02420 at 536.702 kb on + strand, within DDA3937_RS02420 at 536.833 kb on - strand, within DDA3937_RS02420 at 536.980 kb on + strand at 537.000 kb on - strand at 537.037 kb on + strand at 537.037 kb on + strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.038 kb on - strand at 537.049 kb on - strand at 537.049 kb on - strand at 537.074 kb on - strand at 537.076 kb on + strand at 537.076 kb on + strand at 537.076 kb on + strand at 537.077 kb on - strand at 537.077 kb on - strand at 537.077 kb on - strand at 537.090 kb on - strand at 537.103 kb on - strand at 537.103 kb on - strand at 537.343 kb on + strand, within DDA3937_RS02425 at 537.344 kb on - strand, within DDA3937_RS02425 at 537.345 kb on + strand, within DDA3937_RS02425 at 537.346 kb on - strand, within DDA3937_RS02425 at 537.451 kb on - strand, within DDA3937_RS02425 at 537.451 kb on - strand, within DDA3937_RS02425 at 537.462 kb on + strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.463 kb on - strand, within DDA3937_RS02425 at 537.668 kb on + strand, within DDA3937_RS02425 at 537.668 kb on + strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.710 kb on - strand, within DDA3937_RS02425 at 537.783 kb on + strand at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.783 kb on + strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.784 kb on - strand, within DDA3937_RS02425 at 537.856 kb on + strand, within DDA3937_RS02425 at 537.856 kb on + strand, within DDA3937_RS02425 at 537.856 kb on + strand, within DDA3937_RS02425 at 537.857 kb on - strand, within DDA3937_RS02425 at 537.857 kb on - strand, within DDA3937_RS02425 at 537.857 kb on - strand, within DDA3937_RS02425 at 537.861 kb on - strand, within DDA3937_RS02425 at 537.939 kb on + strand, within DDA3937_RS02425 at 537.940 kb on - strand, within DDA3937_RS02425 at 537.940 kb on - strand, within DDA3937_RS02425 at 537.960 kb on + strand, within DDA3937_RS02425 at 537.961 kb on - strand, within DDA3937_RS02425 at 538.003 kb on + strand at 538.004 kb on - strand at 538.070 kb on - strand at 538.070 kb on - strand at 538.071 kb on + strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.095 kb on + strand at 538.096 kb on - strand at 538.096 kb on - strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.100 kb on - strand at 538.100 kb on - strand at 538.100 kb on - strand at 538.162 kb on + strand at 538.162 kb on + strand at 538.162 kb on + strand at 538.163 kb on - strand at 538.163 kb on - strand at 538.163 kb on - strand at 538.163 kb on - strand at 538.168 kb on - strand at 538.197 kb on - strand at 538.213 kb on + strand at 538.213 kb on + strand at 538.214 kb on - strand at 538.214 kb on - strand at 538.214 kb on - strand at 538.214 kb on - strand at 538.248 kb on + strand at 538.248 kb on + strand at 538.248 kb on + strand at 538.248 kb on + strand at 538.249 kb on - strand at 538.249 kb on - strand at 538.249 kb on - strand at 538.255 kb on + strand at 538.256 kb on - strand at 538.313 kb on + strand, within DDA3937_RS02430 at 538.313 kb on + strand, within DDA3937_RS02430 at 538.314 kb on - strand, within DDA3937_RS02430 at 538.369 kb on + strand, within DDA3937_RS02430 at 538.370 kb on - strand, within DDA3937_RS02430 at 538.472 kb on - strand, within DDA3937_RS02430 at 538.477 kb on + strand, within DDA3937_RS02430 at 538.477 kb on + strand, within DDA3937_RS02430 at 538.478 kb on - strand, within DDA3937_RS02430 at 538.494 kb on + strand, within DDA3937_RS02430 at 538.495 kb on - strand, within DDA3937_RS02430 at 538.495 kb on - strand, within DDA3937_RS02430 at 538.495 kb on - strand, within DDA3937_RS02430 at 538.496 kb on + strand, within DDA3937_RS02430 at 538.496 kb on + strand, within DDA3937_RS02430 at 538.496 kb on + strand, within DDA3937_RS02430 at 538.497 kb on - strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand at 538.587 kb on - strand, within DDA3937_RS02430 at 538.621 kb on + strand, within DDA3937_RS02430 at 538.651 kb on + strand, within DDA3937_RS02430 at 538.651 kb on + strand, within DDA3937_RS02430 at 538.652 kb on - strand, within DDA3937_RS02430 at 538.652 kb on - strand, within DDA3937_RS02430 at 538.652 kb on - strand, within DDA3937_RS02430 at 538.750 kb on + strand, within DDA3937_RS02430 at 538.751 kb on - strand, within DDA3937_RS02430 at 538.805 kb on + strand, within DDA3937_RS02430 at 538.805 kb on + strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 539.013 kb on - strand, within DDA3937_RS02435
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 536,124 + DDA3937_RS02420 0.34 -1.5 536,124 + DDA3937_RS02420 0.34 -0.1 536,124 + DDA3937_RS02420 0.34 +1.5 536,125 - DDA3937_RS02420 0.34 -1.4 536,125 - DDA3937_RS02420 0.34 -1.2 536,125 - DDA3937_RS02420 0.34 -0.6 536,125 - DDA3937_RS02420 0.34 -0.0 536,223 + DDA3937_RS02420 0.42 -0.6 536,322 - DDA3937_RS02420 0.49 -0.1 536,322 - DDA3937_RS02420 0.49 -1.8 536,422 + DDA3937_RS02420 0.56 -0.2 536,650 + DDA3937_RS02420 0.72 -2.6 536,650 + DDA3937_RS02420 0.72 -0.2 536,651 - DDA3937_RS02420 0.72 -0.2 536,651 - DDA3937_RS02420 0.72 -0.1 536,651 - DDA3937_RS02420 0.72 +0.2 536,651 - DDA3937_RS02420 0.72 +1.6 536,651 - DDA3937_RS02420 0.72 -0.7 536,702 + DDA3937_RS02420 0.76 -3.5 536,833 - DDA3937_RS02420 0.86 -0.5 536,980 + -1.6 537,000 - -1.1 537,037 + -3.5 537,037 + -0.4 537,038 - -0.1 537,038 - -0.3 537,038 - -0.3 537,038 - -0.8 537,038 - -0.5 537,049 - +0.1 537,049 - -0.5 537,074 - -1.0 537,076 + +1.0 537,076 + -2.0 537,076 + -2.6 537,077 - -0.2 537,077 - +0.5 537,077 - -0.7 537,090 - -0.6 537,103 - +0.0 537,103 - -0.0 537,343 + DDA3937_RS02425 0.24 -1.6 537,344 - DDA3937_RS02425 0.24 -3.8 537,345 + DDA3937_RS02425 0.24 -2.4 537,346 - DDA3937_RS02425 0.24 -3.4 537,451 - DDA3937_RS02425 0.35 -1.8 537,451 - DDA3937_RS02425 0.35 -2.0 537,462 + DDA3937_RS02425 0.36 -1.4 537,463 - DDA3937_RS02425 0.36 -2.6 537,463 - DDA3937_RS02425 0.36 -1.1 537,463 - DDA3937_RS02425 0.36 -1.8 537,463 - DDA3937_RS02425 0.36 -3.0 537,668 + DDA3937_RS02425 0.57 -0.8 537,668 + DDA3937_RS02425 0.57 +0.2 537,710 - DDA3937_RS02425 0.61 -2.3 537,710 - DDA3937_RS02425 0.61 -3.4 537,710 - DDA3937_RS02425 0.61 -2.1 537,710 - DDA3937_RS02425 0.61 -4.0 537,710 - DDA3937_RS02425 0.61 -0.8 537,783 + -0.8 537,783 + DDA3937_RS02425 0.69 -0.4 537,783 + DDA3937_RS02425 0.69 -0.3 537,783 + DDA3937_RS02425 0.69 -0.8 537,783 + DDA3937_RS02425 0.69 +0.7 537,783 + DDA3937_RS02425 0.69 -0.8 537,784 - DDA3937_RS02425 0.69 -1.5 537,784 - DDA3937_RS02425 0.69 -3.1 537,784 - DDA3937_RS02425 0.69 -0.9 537,784 - DDA3937_RS02425 0.69 -2.3 537,784 - DDA3937_RS02425 0.69 -1.4 537,856 + DDA3937_RS02425 0.76 -0.4 537,856 + DDA3937_RS02425 0.76 -2.9 537,856 + DDA3937_RS02425 0.76 -5.0 537,857 - DDA3937_RS02425 0.76 -2.0 537,857 - DDA3937_RS02425 0.76 -4.1 537,857 - DDA3937_RS02425 0.76 -3.4 537,861 - DDA3937_RS02425 0.76 -4.2 537,939 + DDA3937_RS02425 0.84 -2.8 537,940 - DDA3937_RS02425 0.85 -1.8 537,940 - DDA3937_RS02425 0.85 -1.8 537,960 + DDA3937_RS02425 0.87 -1.4 537,961 - DDA3937_RS02425 0.87 +0.5 538,003 + -1.5 538,004 - -1.7 538,070 - -1.4 538,070 - -3.3 538,071 + -0.4 538,072 - -2.3 538,072 - -1.0 538,072 - -1.0 538,072 - -0.4 538,072 - -1.7 538,072 - -1.0 538,095 + -3.4 538,096 - -2.0 538,096 - -1.9 538,099 + -1.6 538,099 + -2.1 538,099 + -1.4 538,099 + -0.2 538,099 + -2.3 538,100 - -1.4 538,100 - -2.3 538,100 - -1.1 538,162 + -3.0 538,162 + -0.5 538,162 + -2.0 538,163 - -0.1 538,163 - +0.8 538,163 - -0.6 538,163 - +0.9 538,168 - -0.8 538,197 - -1.0 538,213 + -0.5 538,213 + +0.8 538,214 - -0.0 538,214 - -0.4 538,214 - -0.3 538,214 - -0.5 538,248 + -0.7 538,248 + +0.7 538,248 + +0.0 538,248 + +1.0 538,249 - +0.1 538,249 - +1.5 538,249 - +0.2 538,255 + -0.5 538,256 - -0.1 538,313 + DDA3937_RS02430 0.14 +1.3 538,313 + DDA3937_RS02430 0.14 -0.2 538,314 - DDA3937_RS02430 0.14 +1.2 538,369 + DDA3937_RS02430 0.22 -0.5 538,370 - DDA3937_RS02430 0.22 +2.1 538,472 - DDA3937_RS02430 0.37 +0.3 538,477 + DDA3937_RS02430 0.38 +1.7 538,477 + DDA3937_RS02430 0.38 -0.7 538,478 - DDA3937_RS02430 0.38 +1.1 538,494 + DDA3937_RS02430 0.40 +0.8 538,495 - DDA3937_RS02430 0.40 -0.6 538,495 - DDA3937_RS02430 0.40 -0.4 538,495 - DDA3937_RS02430 0.40 +0.0 538,496 + DDA3937_RS02430 0.41 -0.2 538,496 + DDA3937_RS02430 0.41 -0.1 538,496 + DDA3937_RS02430 0.41 +0.7 538,497 - DDA3937_RS02430 0.41 -0.0 538,586 + DDA3937_RS02430 0.54 +1.5 538,586 + DDA3937_RS02430 0.54 +1.1 538,586 + DDA3937_RS02430 0.54 -0.4 538,586 + DDA3937_RS02430 0.54 +0.8 538,586 + DDA3937_RS02430 0.54 -0.1 538,586 + -0.4 538,587 - DDA3937_RS02430 0.54 +0.0 538,621 + DDA3937_RS02430 0.59 +0.6 538,651 + DDA3937_RS02430 0.63 -1.6 538,651 + DDA3937_RS02430 0.63 +1.5 538,652 - DDA3937_RS02430 0.63 +2.3 538,652 - DDA3937_RS02430 0.63 -0.5 538,652 - DDA3937_RS02430 0.63 -0.8 538,750 + DDA3937_RS02430 0.78 -0.1 538,751 - DDA3937_RS02430 0.78 +2.4 538,805 + DDA3937_RS02430 0.86 -1.0 538,805 + DDA3937_RS02430 0.86 -0.8 538,806 - DDA3937_RS02430 0.86 +0.1 538,806 - DDA3937_RS02430 0.86 -0.9 538,806 - DDA3937_RS02430 0.86 -0.2 538,806 - DDA3937_RS02430 0.86 +0.1 538,806 - DDA3937_RS02430 0.86 -1.6 539,013 - DDA3937_RS02435 0.13 -2.3
Or see this region's nucleotide sequence