Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02340 and DDA3937_RS02345 are separated by 277 nucleotides DDA3937_RS02345 and DDA3937_RS02350 are separated by 365 nucleotides DDA3937_RS02350 and DDA3937_RS02355 overlap by 4 nucleotides DDA3937_RS02355 and DDA3937_RS02360 are separated by 76 nucleotides
DDA3937_RS02340: DDA3937_RS02340 - hypothetical protein, at 518,418 to 518,687
_RS02340
DDA3937_RS02345: DDA3937_RS02345 - hypothetical protein, at 518,965 to 519,222
_RS02345
DDA3937_RS02350: DDA3937_RS02350 - ABC transporter ATP-binding protein, at 519,588 to 521,288
_RS02350
DDA3937_RS02355: DDA3937_RS02355 - ABC transporter permease, at 521,285 to 522,124
_RS02355
DDA3937_RS02360: DDA3937_RS02360 - ABC transporter permease, at 522,201 to 523,166
_RS02360
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 518.609 kb on + strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.637 kb on + strand, within DDA3937_RS02340 at 518.692 kb on + strand at 518.730 kb on + strand at 518.734 kb on + strand at 518.970 kb on + strand at 518.970 kb on + strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.973 kb on + strand at 518.979 kb on + strand at 518.980 kb on - strand at 519.001 kb on + strand, within DDA3937_RS02345 at 519.002 kb on - strand, within DDA3937_RS02345 at 519.049 kb on - strand, within DDA3937_RS02345 at 519.058 kb on + strand, within DDA3937_RS02345 at 519.096 kb on + strand, within DDA3937_RS02345 at 519.126 kb on - strand, within DDA3937_RS02345 at 519.214 kb on + strand at 519.303 kb on + strand at 519.306 kb on + strand at 519.309 kb on - strand at 519.349 kb on - strand at 519.621 kb on + strand at 519.658 kb on + strand at 519.681 kb on + strand at 519.776 kb on + strand at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 520.131 kb on - strand, within DDA3937_RS02350 at 520.227 kb on + strand, within DDA3937_RS02350 at 520.227 kb on + strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.228 kb on - strand, within DDA3937_RS02350 at 520.248 kb on - strand, within DDA3937_RS02350 at 520.307 kb on + strand, within DDA3937_RS02350 at 520.307 kb on + strand, within DDA3937_RS02350 at 520.307 kb on + strand, within DDA3937_RS02350 at 520.310 kb on + strand, within DDA3937_RS02350 at 520.311 kb on - strand, within DDA3937_RS02350 at 520.368 kb on + strand, within DDA3937_RS02350 at 520.513 kb on + strand, within DDA3937_RS02350 at 520.514 kb on - strand, within DDA3937_RS02350 at 520.884 kb on - strand, within DDA3937_RS02350 at 520.899 kb on - strand, within DDA3937_RS02350 at 520.975 kb on - strand, within DDA3937_RS02350 at 521.135 kb on + strand at 521.309 kb on - strand at 521.537 kb on + strand at 521.538 kb on - strand, within DDA3937_RS02355 at 521.554 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.571 kb on + strand, within DDA3937_RS02355 at 521.572 kb on - strand, within DDA3937_RS02355 at 521.572 kb on - strand, within DDA3937_RS02355 at 521.659 kb on - strand, within DDA3937_RS02355 at 521.695 kb on + strand, within DDA3937_RS02355 at 521.696 kb on - strand, within DDA3937_RS02355 at 521.898 kb on + strand, within DDA3937_RS02355 at 521.899 kb on - strand, within DDA3937_RS02355 at 522.041 kb on + strand at 522.042 kb on - strand at 522.042 kb on - strand at 522.100 kb on - strand at 522.118 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.142 kb on + strand at 522.143 kb on - strand at 522.149 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.172 kb on + strand at 522.173 kb on - strand at 522.173 kb on - strand at 522.173 kb on - strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.174 kb on + strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.175 kb on - strand at 522.180 kb on - strand at 522.188 kb on - strand at 522.190 kb on - strand at 522.190 kb on - strand at 522.190 kb on - strand at 522.253 kb on + strand at 522.253 kb on + strand at 522.254 kb on - strand at 522.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 518,609 + DDA3937_RS02340 0.71 -0.3 518,610 - DDA3937_RS02340 0.71 +0.3 518,610 - DDA3937_RS02340 0.71 +1.6 518,610 - DDA3937_RS02340 0.71 -0.2 518,610 - DDA3937_RS02340 0.71 +0.5 518,637 + DDA3937_RS02340 0.81 -0.2 518,692 + -0.1 518,730 + -1.6 518,734 + +0.8 518,970 + +0.6 518,970 + -0.7 518,971 - +0.3 518,971 - -1.2 518,971 - +0.2 518,973 + +1.6 518,979 + -0.4 518,980 - -0.2 519,001 + DDA3937_RS02345 0.14 +1.5 519,002 - DDA3937_RS02345 0.14 -0.8 519,049 - DDA3937_RS02345 0.33 -0.5 519,058 + DDA3937_RS02345 0.36 -1.1 519,096 + DDA3937_RS02345 0.51 -0.5 519,126 - DDA3937_RS02345 0.62 -0.4 519,214 + -0.1 519,303 + +0.5 519,306 + +0.6 519,309 - -1.5 519,349 - +1.7 519,621 + +0.7 519,658 + -0.2 519,681 + +2.9 519,776 + -1.1 519,920 + DDA3937_RS02350 0.20 -0.0 519,920 + DDA3937_RS02350 0.20 -0.8 519,920 + DDA3937_RS02350 0.20 +0.2 519,920 + DDA3937_RS02350 0.20 -1.1 519,920 + DDA3937_RS02350 0.20 -1.6 519,920 + DDA3937_RS02350 0.20 -0.4 519,921 - DDA3937_RS02350 0.20 -0.2 519,921 - DDA3937_RS02350 0.20 -0.2 519,921 - DDA3937_RS02350 0.20 +0.0 519,921 - DDA3937_RS02350 0.20 -0.3 519,921 - DDA3937_RS02350 0.20 -1.2 519,921 - DDA3937_RS02350 0.20 -2.2 519,921 - DDA3937_RS02350 0.20 +1.0 520,131 - DDA3937_RS02350 0.32 -0.2 520,227 + DDA3937_RS02350 0.38 -0.5 520,227 + DDA3937_RS02350 0.38 +0.2 520,228 - DDA3937_RS02350 0.38 +0.8 520,228 - DDA3937_RS02350 0.38 -1.1 520,228 - DDA3937_RS02350 0.38 -1.8 520,228 - DDA3937_RS02350 0.38 -2.0 520,248 - DDA3937_RS02350 0.39 -0.6 520,307 + DDA3937_RS02350 0.42 +0.5 520,307 + DDA3937_RS02350 0.42 +0.2 520,307 + DDA3937_RS02350 0.42 +1.4 520,310 + DDA3937_RS02350 0.42 -0.8 520,311 - DDA3937_RS02350 0.43 -1.4 520,368 + DDA3937_RS02350 0.46 -0.5 520,513 + DDA3937_RS02350 0.54 -0.1 520,514 - DDA3937_RS02350 0.54 -1.2 520,884 - DDA3937_RS02350 0.76 -1.9 520,899 - DDA3937_RS02350 0.77 -1.3 520,975 - DDA3937_RS02350 0.82 -0.4 521,135 + +0.0 521,309 - -0.2 521,537 + +1.2 521,538 - DDA3937_RS02355 0.30 -0.1 521,554 + DDA3937_RS02355 0.32 -1.6 521,571 + DDA3937_RS02355 0.34 +0.7 521,571 + DDA3937_RS02355 0.34 +0.7 521,571 + DDA3937_RS02355 0.34 -1.1 521,571 + DDA3937_RS02355 0.34 -0.9 521,571 + DDA3937_RS02355 0.34 -0.4 521,572 - DDA3937_RS02355 0.34 +0.1 521,572 - DDA3937_RS02355 0.34 -1.4 521,659 - DDA3937_RS02355 0.45 -1.1 521,695 + DDA3937_RS02355 0.49 -0.5 521,696 - DDA3937_RS02355 0.49 +1.5 521,898 + DDA3937_RS02355 0.73 +0.3 521,899 - DDA3937_RS02355 0.73 +0.1 522,041 + +0.3 522,042 - -1.1 522,042 - -1.5 522,100 - -0.8 522,118 + -1.7 522,142 + -1.1 522,142 + -1.6 522,142 + +2.9 522,142 + -0.8 522,143 - -1.1 522,149 + -1.6 522,172 + -0.4 522,172 + -2.0 522,172 + +0.1 522,172 + +0.7 522,173 - -0.7 522,173 - -0.4 522,173 - +0.4 522,174 + +0.1 522,174 + -0.1 522,174 + -0.5 522,174 + -0.2 522,174 + +0.0 522,174 + -1.4 522,174 + -0.4 522,175 - -0.1 522,175 - +1.3 522,175 - -1.4 522,175 - +0.1 522,180 - -1.7 522,188 - -0.3 522,190 - +0.8 522,190 - -2.4 522,190 - -0.2 522,253 + -0.4 522,253 + -0.2 522,254 - -1.0 522,254 - -0.5
Or see this region's nucleotide sequence