Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02150

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS02140 and DDA3937_RS21785 are separated by 94 nucleotidesDDA3937_RS21785 and DDA3937_RS02145 are separated by 59 nucleotidesDDA3937_RS02145 and DDA3937_RS02150 overlap by 4 nucleotidesDDA3937_RS02150 and DDA3937_RS02155 are separated by 122 nucleotides DDA3937_RS02140: DDA3937_RS02140 - carboxymuconolactone decarboxylase family protein, at 476,374 to 476,805 _RS02140 DDA3937_RS21785: DDA3937_RS21785 - MFS transporter, at 476,900 to 477,082 _RS21785 DDA3937_RS02145: DDA3937_RS02145 - DUF4276 family protein, at 477,142 to 477,765 _RS02145 DDA3937_RS02150: DDA3937_RS02150 - AAA family ATPase, at 477,762 to 478,922 _RS02150 DDA3937_RS02155: DDA3937_RS02155 - DeoR/GlpR transcriptional regulator, at 479,045 to 479,836 _RS02155 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2at 476.881 kb on + strandat 476.882 kb on - strandat 476.908 kb on + strandat 476.908 kb on + strandat 476.908 kb on + strandat 477.069 kb on + strandat 477.070 kb on - strandat 477.090 kb on + strandat 477.133 kb on + strandat 477.133 kb on + strandat 477.133 kb on + strandat 477.134 kb on - strandat 477.134 kb on - strandat 477.134 kb on - strandat 477.134 kb on - strandat 477.137 kb on + strandat 477.138 kb on - strandat 477.138 kb on - strandat 477.153 kb on + strandat 477.153 kb on + strandat 477.153 kb on + strandat 477.153 kb on + strandat 477.154 kb on - strandat 477.154 kb on - strandat 477.154 kb on - strandat 477.154 kb on - strandat 477.154 kb on - strandat 477.154 kb on - strandat 477.163 kb on + strandat 477.163 kb on + strandat 477.163 kb on + strandat 477.163 kb on + strandat 477.164 kb on - strandat 477.164 kb on - strandat 477.171 kb on + strandat 477.174 kb on + strandat 477.206 kb on - strand, within DDA3937_RS02145at 477.206 kb on - strand, within DDA3937_RS02145at 477.206 kb on - strand, within DDA3937_RS02145at 477.206 kb on - strand, within DDA3937_RS02145at 477.232 kb on + strand, within DDA3937_RS02145at 477.331 kb on + strand, within DDA3937_RS02145at 477.331 kb on + strand, within DDA3937_RS02145at 477.331 kb on + strand, within DDA3937_RS02145at 477.331 kb on + strand, within DDA3937_RS02145at 477.331 kb on + strand, within DDA3937_RS02145at 477.332 kb on - strand, within DDA3937_RS02145at 477.332 kb on - strand, within DDA3937_RS02145at 477.332 kb on - strand, within DDA3937_RS02145at 477.332 kb on - strand, within DDA3937_RS02145at 477.332 kb on - strand, within DDA3937_RS02145at 477.346 kb on + strand, within DDA3937_RS02145at 477.346 kb on + strand, within DDA3937_RS02145at 477.347 kb on - strand, within DDA3937_RS02145at 477.347 kb on - strand, within DDA3937_RS02145at 477.393 kb on + strand, within DDA3937_RS02145at 477.394 kb on - strand, within DDA3937_RS02145at 477.394 kb on - strand, within DDA3937_RS02145at 477.394 kb on - strand, within DDA3937_RS02145at 477.420 kb on + strand, within DDA3937_RS02145at 477.421 kb on - strand, within DDA3937_RS02145at 477.503 kb on - strandat 477.544 kb on + strand, within DDA3937_RS02145at 477.545 kb on - strand, within DDA3937_RS02145at 477.545 kb on - strand, within DDA3937_RS02145at 477.621 kb on + strand, within DDA3937_RS02145at 477.621 kb on + strand, within DDA3937_RS02145at 477.621 kb on + strand, within DDA3937_RS02145at 477.621 kb on + strand, within DDA3937_RS02145at 477.621 kb on + strand, within DDA3937_RS02145at 477.621 kb on + strand, within DDA3937_RS02145at 477.621 kb on + strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.622 kb on - strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.623 kb on + strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.624 kb on - strand, within DDA3937_RS02145at 477.729 kb on + strandat 477.730 kb on - strandat 477.730 kb on - strandat 477.735 kb on + strandat 477.755 kb on + strandat 477.755 kb on + strandat 477.755 kb on + strandat 477.755 kb on + strandat 477.755 kb on + strandat 477.755 kb on + strandat 477.755 kb on + strandat 477.756 kb on - strandat 477.756 kb on - strandat 477.833 kb on + strandat 477.833 kb on + strandat 478.017 kb on + strand, within DDA3937_RS02150at 478.093 kb on + strand, within DDA3937_RS02150at 478.697 kb on + strand, within DDA3937_RS02150at 478.785 kb on + strand, within DDA3937_RS02150at 478.984 kb on + strandat 478.992 kb on + strandat 479.027 kb on + strandat 479.028 kb on - strandat 479.031 kb on + strandat 479.031 kb on + strandat 479.032 kb on - strandat 479.032 kb on - strandat 479.202 kb on + strand, within DDA3937_RS02155at 479.202 kb on + strand, within DDA3937_RS02155at 479.202 kb on + strand, within DDA3937_RS02155at 479.203 kb on - strand, within DDA3937_RS02155at 479.203 kb on - strand, within DDA3937_RS02155at 479.203 kb on - strand, within DDA3937_RS02155at 479.203 kb on - strand, within DDA3937_RS02155at 479.268 kb on - strand, within DDA3937_RS02155at 479.437 kb on + strand, within DDA3937_RS02155at 479.656 kb on - strand, within DDA3937_RS02155at 479.656 kb on - strand, within DDA3937_RS02155at 479.658 kb on + strand, within DDA3937_RS02155at 479.670 kb on + strand, within DDA3937_RS02155at 479.670 kb on + strand, within DDA3937_RS02155at 479.670 kb on + strand, within DDA3937_RS02155at 479.671 kb on - strand, within DDA3937_RS02155at 479.758 kb on + strandat 479.889 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
476,881 + -0.0
476,882 - -0.6
476,908 + -1.2
476,908 + -0.0
476,908 + -0.4
477,069 + -0.8
477,070 - -0.3
477,090 + -0.4
477,133 + -0.2
477,133 + +0.7
477,133 + -0.2
477,134 - -0.3
477,134 - -0.3
477,134 - -0.2
477,134 - -0.2
477,137 + -0.6
477,138 - -0.3
477,138 - +0.1
477,153 + +0.2
477,153 + -0.1
477,153 + +1.2
477,153 + +0.2
477,154 - +0.7
477,154 - +1.2
477,154 - -0.4
477,154 - -0.2
477,154 - +0.0
477,154 - +0.2
477,163 + -1.1
477,163 + -2.5
477,163 + -0.5
477,163 + +0.6
477,164 - +0.0
477,164 - +0.7
477,171 + +0.3
477,174 + -0.0
477,206 - DDA3937_RS02145 0.10 -1.1
477,206 - DDA3937_RS02145 0.10 +0.2
477,206 - DDA3937_RS02145 0.10 -0.2
477,206 - DDA3937_RS02145 0.10 -0.7
477,232 + DDA3937_RS02145 0.14 -0.7
477,331 + DDA3937_RS02145 0.30 -0.4
477,331 + DDA3937_RS02145 0.30 +0.3
477,331 + DDA3937_RS02145 0.30 -1.1
477,331 + DDA3937_RS02145 0.30 -0.1
477,331 + DDA3937_RS02145 0.30 -1.2
477,332 - DDA3937_RS02145 0.30 +0.2
477,332 - DDA3937_RS02145 0.30 -0.8
477,332 - DDA3937_RS02145 0.30 +0.9
477,332 - DDA3937_RS02145 0.30 +1.2
477,332 - DDA3937_RS02145 0.30 -0.1
477,346 + DDA3937_RS02145 0.33 -1.3
477,346 + DDA3937_RS02145 0.33 +0.2
477,347 - DDA3937_RS02145 0.33 -0.8
477,347 - DDA3937_RS02145 0.33 -0.4
477,393 + DDA3937_RS02145 0.40 +0.3
477,394 - DDA3937_RS02145 0.40 +0.8
477,394 - DDA3937_RS02145 0.40 +1.1
477,394 - DDA3937_RS02145 0.40 +1.0
477,420 + DDA3937_RS02145 0.45 -0.2
477,421 - DDA3937_RS02145 0.45 -0.7
477,503 - +0.2
477,544 + DDA3937_RS02145 0.64 +1.0
477,545 - DDA3937_RS02145 0.65 +0.2
477,545 - DDA3937_RS02145 0.65 -0.1
477,621 + DDA3937_RS02145 0.77 -1.1
477,621 + DDA3937_RS02145 0.77 -1.1
477,621 + DDA3937_RS02145 0.77 +0.4
477,621 + DDA3937_RS02145 0.77 -1.9
477,621 + DDA3937_RS02145 0.77 -1.5
477,621 + DDA3937_RS02145 0.77 +0.2
477,621 + DDA3937_RS02145 0.77 -0.9
477,622 - DDA3937_RS02145 0.77 +0.3
477,622 - DDA3937_RS02145 0.77 -0.4
477,622 - DDA3937_RS02145 0.77 -0.1
477,622 - DDA3937_RS02145 0.77 -0.4
477,622 - DDA3937_RS02145 0.77 -0.2
477,622 - DDA3937_RS02145 0.77 -1.7
477,622 - DDA3937_RS02145 0.77 +0.9
477,622 - DDA3937_RS02145 0.77 -2.2
477,622 - DDA3937_RS02145 0.77 -1.5
477,623 + DDA3937_RS02145 0.77 +0.4
477,623 + DDA3937_RS02145 0.77 -0.1
477,623 + DDA3937_RS02145 0.77 +1.4
477,623 + DDA3937_RS02145 0.77 -0.4
477,623 + DDA3937_RS02145 0.77 +1.0
477,623 + DDA3937_RS02145 0.77 -0.0
477,623 + DDA3937_RS02145 0.77 +0.3
477,623 + DDA3937_RS02145 0.77 +0.3
477,624 - DDA3937_RS02145 0.77 -1.0
477,624 - DDA3937_RS02145 0.77 +0.9
477,624 - DDA3937_RS02145 0.77 -1.1
477,624 - DDA3937_RS02145 0.77 -0.1
477,624 - DDA3937_RS02145 0.77 -1.0
477,624 - DDA3937_RS02145 0.77 +1.0
477,624 - DDA3937_RS02145 0.77 -0.4
477,624 - DDA3937_RS02145 0.77 -0.2
477,624 - DDA3937_RS02145 0.77 -1.4
477,624 - DDA3937_RS02145 0.77 -0.7
477,624 - DDA3937_RS02145 0.77 -0.3
477,624 - DDA3937_RS02145 0.77 +0.2
477,624 - DDA3937_RS02145 0.77 -2.0
477,624 - DDA3937_RS02145 0.77 +0.9
477,624 - DDA3937_RS02145 0.77 -0.2
477,624 - DDA3937_RS02145 0.77 +0.9
477,624 - DDA3937_RS02145 0.77 -0.5
477,624 - DDA3937_RS02145 0.77 -1.4
477,624 - DDA3937_RS02145 0.77 -0.3
477,729 + +0.2
477,730 - +0.1
477,730 - +1.8
477,735 + -0.0
477,755 + +0.3
477,755 + -0.7
477,755 + -0.3
477,755 + -0.3
477,755 + -0.7
477,755 + -0.5
477,755 + -1.4
477,756 - -2.4
477,756 - +0.1
477,833 + -0.0
477,833 + -1.5
478,017 + DDA3937_RS02150 0.22 -1.4
478,093 + DDA3937_RS02150 0.29 -2.7
478,697 + DDA3937_RS02150 0.81 -1.2
478,785 + DDA3937_RS02150 0.88 -1.6
478,984 + +0.4
478,992 + +1.0
479,027 + +1.4
479,028 - -2.4
479,031 + +0.1
479,031 + +0.9
479,032 - +0.2
479,032 - -0.3
479,202 + DDA3937_RS02155 0.20 +0.6
479,202 + DDA3937_RS02155 0.20 -0.2
479,202 + DDA3937_RS02155 0.20 -1.1
479,203 - DDA3937_RS02155 0.20 +2.2
479,203 - DDA3937_RS02155 0.20 -1.4
479,203 - DDA3937_RS02155 0.20 +0.8
479,203 - DDA3937_RS02155 0.20 +0.8
479,268 - DDA3937_RS02155 0.28 +0.9
479,437 + DDA3937_RS02155 0.49 +1.0
479,656 - DDA3937_RS02155 0.77 +1.1
479,656 - DDA3937_RS02155 0.77 -0.0
479,658 + DDA3937_RS02155 0.77 +1.1
479,670 + DDA3937_RS02155 0.79 +0.1
479,670 + DDA3937_RS02155 0.79 +0.7
479,670 + DDA3937_RS02155 0.79 +0.7
479,671 - DDA3937_RS02155 0.79 +0.3
479,758 + +1.0
479,889 - +0.6

Or see this region's nucleotide sequence