Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01915 and DDA3937_RS01920 are separated by 112 nucleotides DDA3937_RS01920 and DDA3937_RS01925 are separated by 16 nucleotides DDA3937_RS01925 and DDA3937_RS01930 are separated by 411 nucleotides
DDA3937_RS01915: DDA3937_RS01915 - 2-iminobutanoate/2-iminopropanoate deaminase, at 431,010 to 431,396
_RS01915
DDA3937_RS01920: DDA3937_RS01920 - aspartate carbamoyltransferase regulatory subunit, at 431,509 to 431,973
_RS01920
DDA3937_RS01925: DDA3937_RS01925 - aspartate carbamoyltransferase, at 431,990 to 432,925
_RS01925
DDA3937_RS01930: DDA3937_RS01930 - YhcH/YjgK/YiaL family protein, at 433,337 to 433,804
_RS01930
Position (kb) 431
432
433 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 431.125 kb on + strand, within DDA3937_RS01915 at 431.126 kb on - strand, within DDA3937_RS01915 at 431.181 kb on - strand, within DDA3937_RS01915 at 431.347 kb on + strand, within DDA3937_RS01915 at 431.378 kb on + strand at 431.396 kb on + strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.439 kb on - strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.555 kb on + strand at 431.555 kb on + strand at 431.556 kb on - strand, within DDA3937_RS01920 at 431.556 kb on - strand, within DDA3937_RS01920 at 431.631 kb on + strand, within DDA3937_RS01920 at 431.632 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.785 kb on - strand, within DDA3937_RS01920 at 431.808 kb on + strand, within DDA3937_RS01920 at 431.887 kb on + strand, within DDA3937_RS01920 at 431.887 kb on + strand, within DDA3937_RS01920 at 431.913 kb on + strand, within DDA3937_RS01920 at 431.914 kb on - strand, within DDA3937_RS01920 at 431.947 kb on + strand at 431.947 kb on + strand at 431.947 kb on + strand at 431.948 kb on - strand at 431.948 kb on - strand at 431.953 kb on + strand at 431.959 kb on - strand at 431.959 kb on - strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 432.042 kb on + strand at 432.043 kb on - strand at 432.043 kb on - strand at 432.046 kb on + strand at 432.047 kb on - strand at 432.069 kb on + strand at 432.070 kb on - strand at 432.070 kb on - strand at 432.073 kb on - strand at 432.073 kb on - strand at 432.196 kb on + strand, within DDA3937_RS01925 at 432.197 kb on - strand, within DDA3937_RS01925 at 432.197 kb on - strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.247 kb on - strand, within DDA3937_RS01925 at 432.247 kb on - strand, within DDA3937_RS01925 at 432.253 kb on + strand, within DDA3937_RS01925 at 432.253 kb on + strand, within DDA3937_RS01925 at 432.286 kb on + strand, within DDA3937_RS01925 at 432.286 kb on + strand, within DDA3937_RS01925 at 432.287 kb on - strand, within DDA3937_RS01925 at 432.297 kb on + strand, within DDA3937_RS01925 at 432.305 kb on - strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.334 kb on - strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.430 kb on - strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.630 kb on + strand, within DDA3937_RS01925 at 432.631 kb on - strand, within DDA3937_RS01925 at 432.631 kb on - strand, within DDA3937_RS01925 at 432.631 kb on - strand, within DDA3937_RS01925 at 432.631 kb on - strand, within DDA3937_RS01925 at 432.631 kb on - strand, within DDA3937_RS01925 at 432.631 kb on - strand, within DDA3937_RS01925 at 432.631 kb on - strand, within DDA3937_RS01925 at 432.907 kb on + strand at 432.907 kb on + strand at 432.907 kb on + strand at 432.907 kb on + strand at 432.907 kb on + strand at 432.907 kb on + strand at 432.907 kb on + strand at 432.908 kb on - strand at 432.908 kb on - strand at 432.908 kb on - strand at 432.909 kb on + strand at 432.910 kb on - strand at 432.911 kb on + strand at 433.103 kb on + strand at 433.104 kb on - strand at 433.104 kb on - strand at 433.137 kb on + strand at 433.288 kb on + strand at 433.288 kb on + strand at 433.324 kb on + strand at 433.376 kb on + strand at 433.377 kb on - strand at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.426 kb on + strand, within DDA3937_RS01930 at 433.468 kb on + strand, within DDA3937_RS01930 at 433.469 kb on - strand, within DDA3937_RS01930 at 433.529 kb on + strand, within DDA3937_RS01930 at 433.529 kb on + strand, within DDA3937_RS01930 at 433.541 kb on + strand, within DDA3937_RS01930 at 433.542 kb on - strand, within DDA3937_RS01930 at 433.542 kb on - strand, within DDA3937_RS01930 at 433.607 kb on - strand, within DDA3937_RS01930 at 433.761 kb on + strand at 433.761 kb on + strand at 433.761 kb on + strand at 433.761 kb on + strand at 433.761 kb on + strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.789 kb on + strand at 433.789 kb on + strand at 433.910 kb on - strand at 433.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 431,125 + DDA3937_RS01915 0.30 -0.2 431,126 - DDA3937_RS01915 0.30 +1.5 431,181 - DDA3937_RS01915 0.44 +0.8 431,347 + DDA3937_RS01915 0.87 +0.2 431,378 + +1.0 431,396 + -0.8 431,397 - -1.8 431,397 - +1.1 431,397 - -0.3 431,410 + -0.1 431,410 + -0.2 431,410 + -2.5 431,410 + -0.1 431,410 + -0.4 431,411 - +0.8 431,411 - -0.9 431,411 - +0.6 431,411 - +0.4 431,411 - +0.4 431,439 - +0.3 431,513 + +1.5 431,513 + +0.4 431,513 + -0.4 431,513 + -0.7 431,513 + -0.0 431,513 + -1.6 431,514 - -0.1 431,514 - +0.0 431,514 - +0.2 431,514 - -0.3 431,514 - +0.8 431,514 - -0.2 431,555 + -0.9 431,555 + -0.1 431,556 - DDA3937_RS01920 0.10 -0.3 431,556 - DDA3937_RS01920 0.10 +0.6 431,631 + DDA3937_RS01920 0.26 -0.1 431,632 - DDA3937_RS01920 0.26 +0.5 431,709 - DDA3937_RS01920 0.43 -0.7 431,709 - DDA3937_RS01920 0.43 -0.2 431,709 - DDA3937_RS01920 0.43 -0.4 431,709 - DDA3937_RS01920 0.43 -0.8 431,744 + DDA3937_RS01920 0.51 -0.6 431,744 + DDA3937_RS01920 0.51 -0.7 431,744 + DDA3937_RS01920 0.51 -1.8 431,744 + DDA3937_RS01920 0.51 -0.9 431,745 - DDA3937_RS01920 0.51 +0.9 431,745 - DDA3937_RS01920 0.51 -0.6 431,745 - DDA3937_RS01920 0.51 -0.3 431,785 - DDA3937_RS01920 0.59 -0.4 431,808 + DDA3937_RS01920 0.64 -0.1 431,887 + DDA3937_RS01920 0.81 +0.7 431,887 + DDA3937_RS01920 0.81 -0.1 431,913 + DDA3937_RS01920 0.87 -1.9 431,914 - DDA3937_RS01920 0.87 -0.9 431,947 + +0.2 431,947 + -1.3 431,947 + +0.2 431,948 - -0.2 431,948 - -1.7 431,953 + -0.0 431,959 - -0.4 431,959 - -1.4 431,980 + -1.3 431,980 + +0.3 431,980 + -0.4 431,980 + -0.1 431,980 + -0.7 431,980 + -0.7 431,981 - -0.2 431,981 - +0.8 431,981 - -0.9 431,981 - +0.5 431,981 - +1.4 432,042 + -1.1 432,043 - -2.1 432,043 - -1.3 432,046 + -0.4 432,047 - -0.9 432,069 + -0.5 432,070 - -1.7 432,070 - -1.2 432,073 - -2.1 432,073 - -0.8 432,196 + DDA3937_RS01925 0.22 -1.1 432,197 - DDA3937_RS01925 0.22 +0.1 432,197 - DDA3937_RS01925 0.22 -2.1 432,246 + DDA3937_RS01925 0.27 -1.7 432,246 + DDA3937_RS01925 0.27 -4.1 432,246 + DDA3937_RS01925 0.27 -1.7 432,246 + DDA3937_RS01925 0.27 -2.4 432,246 + DDA3937_RS01925 0.27 -1.1 432,247 - DDA3937_RS01925 0.27 -0.7 432,247 - DDA3937_RS01925 0.27 -0.0 432,253 + DDA3937_RS01925 0.28 -2.0 432,253 + DDA3937_RS01925 0.28 -1.1 432,286 + DDA3937_RS01925 0.32 -0.4 432,286 + DDA3937_RS01925 0.32 -1.2 432,287 - DDA3937_RS01925 0.32 -2.2 432,297 + DDA3937_RS01925 0.33 -2.9 432,305 - DDA3937_RS01925 0.34 -1.8 432,333 + DDA3937_RS01925 0.37 -1.0 432,333 + DDA3937_RS01925 0.37 -1.3 432,333 + DDA3937_RS01925 0.37 -1.7 432,334 - DDA3937_RS01925 0.37 -1.6 432,369 + DDA3937_RS01925 0.40 -2.1 432,369 + DDA3937_RS01925 0.40 -2.2 432,369 + DDA3937_RS01925 0.40 -1.5 432,369 + DDA3937_RS01925 0.40 -2.2 432,370 - DDA3937_RS01925 0.41 -1.2 432,370 - DDA3937_RS01925 0.41 -2.2 432,370 - DDA3937_RS01925 0.41 -1.6 432,370 - DDA3937_RS01925 0.41 -1.4 432,430 - DDA3937_RS01925 0.47 -2.7 432,630 + DDA3937_RS01925 0.68 -1.0 432,630 + -1.4 432,630 + DDA3937_RS01925 0.68 -2.7 432,630 + DDA3937_RS01925 0.68 +1.8 432,630 + DDA3937_RS01925 0.68 -0.8 432,630 + DDA3937_RS01925 0.68 -1.0 432,630 + DDA3937_RS01925 0.68 -1.1 432,630 + DDA3937_RS01925 0.68 -0.9 432,630 + DDA3937_RS01925 0.68 +0.2 432,630 + DDA3937_RS01925 0.68 -0.8 432,630 + DDA3937_RS01925 0.68 -0.4 432,631 - DDA3937_RS01925 0.68 -1.7 432,631 - DDA3937_RS01925 0.68 -0.4 432,631 - DDA3937_RS01925 0.68 +0.0 432,631 - DDA3937_RS01925 0.68 -2.1 432,631 - DDA3937_RS01925 0.68 -1.0 432,631 - DDA3937_RS01925 0.68 -1.8 432,631 - DDA3937_RS01925 0.68 -0.8 432,907 + +0.8 432,907 + +1.2 432,907 + -1.0 432,907 + -0.7 432,907 + -1.8 432,907 + +0.3 432,907 + +1.0 432,908 - -2.4 432,908 - -0.6 432,908 - -2.3 432,909 + +1.8 432,910 - -1.8 432,911 + -1.9 433,103 + -0.4 433,104 - -0.7 433,104 - -1.1 433,137 + +0.2 433,288 + -0.7 433,288 + +0.2 433,324 + -0.3 433,376 + +0.2 433,377 - -0.2 433,409 + DDA3937_RS01930 0.15 +0.0 433,409 + DDA3937_RS01930 0.15 +0.3 433,409 + DDA3937_RS01930 0.15 -0.5 433,409 + DDA3937_RS01930 0.15 -1.2 433,409 + DDA3937_RS01930 0.15 -1.3 433,410 - DDA3937_RS01930 0.16 -1.4 433,410 - DDA3937_RS01930 0.16 -0.5 433,410 - DDA3937_RS01930 0.16 -2.0 433,410 - DDA3937_RS01930 0.16 -0.8 433,423 + DDA3937_RS01930 0.18 +0.1 433,423 + DDA3937_RS01930 0.18 +0.3 433,423 + DDA3937_RS01930 0.18 +0.8 433,423 + DDA3937_RS01930 0.18 +0.1 433,424 - DDA3937_RS01930 0.19 -0.6 433,424 - DDA3937_RS01930 0.19 -0.5 433,424 - DDA3937_RS01930 0.19 -0.0 433,424 - DDA3937_RS01930 0.19 -0.7 433,424 - DDA3937_RS01930 0.19 +0.0 433,424 - DDA3937_RS01930 0.19 -0.7 433,426 + DDA3937_RS01930 0.19 -1.4 433,468 + DDA3937_RS01930 0.28 -1.3 433,469 - DDA3937_RS01930 0.28 -0.8 433,529 + DDA3937_RS01930 0.41 -0.1 433,529 + DDA3937_RS01930 0.41 -1.2 433,541 + DDA3937_RS01930 0.44 +0.3 433,542 - DDA3937_RS01930 0.44 +0.0 433,542 - DDA3937_RS01930 0.44 -0.6 433,607 - DDA3937_RS01930 0.58 -0.8 433,761 + +1.4 433,761 + -0.1 433,761 + -2.0 433,761 + -0.9 433,761 + +0.2 433,762 - +0.2 433,762 - +0.2 433,762 - -0.2 433,762 - -0.7 433,762 - -0.2 433,762 - -0.7 433,762 - -1.3 433,789 + -0.2 433,789 + -0.0 433,910 - -1.7 433,910 - +1.5
Or see this region's nucleotide sequence