Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01560

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS01555 and DDA3937_RS01560 are separated by 30 nucleotidesDDA3937_RS01560 and DDA3937_RS01565 are separated by 281 nucleotides DDA3937_RS01555: DDA3937_RS01555 - arabinose-5-phosphate isomerase KdsD, at 344,901 to 345,887 _RS01555 DDA3937_RS01560: DDA3937_RS01560 - calcium/sodium antiporter, at 345,918 to 346,880 _RS01560 DDA3937_RS01565: DDA3937_RS01565 - phospholipid ABC transporter ATP-binding protein MlaF, at 347,162 to 347,971 _RS01565 Position (kb) 345 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.119 kb on + strand, within DDA3937_RS01560at 346.127 kb on + strand, within DDA3937_RS01560at 346.128 kb on - strand, within DDA3937_RS01560at 346.136 kb on + strand, within DDA3937_RS01560at 346.266 kb on - strand, within DDA3937_RS01560at 346.269 kb on - strand, within DDA3937_RS01560at 346.273 kb on + strand, within DDA3937_RS01560at 346.273 kb on + strand, within DDA3937_RS01560at 346.274 kb on - strand, within DDA3937_RS01560at 346.274 kb on - strand, within DDA3937_RS01560at 346.274 kb on - strand, within DDA3937_RS01560at 346.350 kb on + strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.463 kb on + strand, within DDA3937_RS01560at 346.464 kb on - strand, within DDA3937_RS01560at 346.464 kb on - strand, within DDA3937_RS01560at 346.464 kb on - strand, within DDA3937_RS01560at 346.530 kb on + strand, within DDA3937_RS01560at 346.531 kb on - strandat 346.531 kb on - strand, within DDA3937_RS01560at 346.531 kb on - strand, within DDA3937_RS01560at 346.633 kb on - strand, within DDA3937_RS01560at 346.633 kb on - strand, within DDA3937_RS01560at 346.662 kb on + strand, within DDA3937_RS01560at 346.663 kb on - strand, within DDA3937_RS01560at 346.746 kb on + strand, within DDA3937_RS01560at 346.747 kb on - strand, within DDA3937_RS01560at 346.747 kb on - strand, within DDA3937_RS01560at 346.747 kb on - strand, within DDA3937_RS01560at 346.832 kb on - strandat 346.843 kb on - strandat 346.846 kb on - strandat 346.846 kb on - strandat 346.846 kb on - strandat 346.857 kb on + strandat 346.858 kb on - strandat 346.858 kb on - strandat 346.858 kb on - strandat 346.863 kb on + strandat 346.900 kb on + strandat 346.900 kb on + strandat 346.902 kb on + strandat 346.902 kb on + strandat 346.902 kb on + strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.915 kb on - strandat 346.947 kb on - strandat 346.947 kb on - strandat 346.981 kb on + strandat 347.009 kb on - strandat 347.053 kb on + strandat 347.161 kb on + strandat 347.294 kb on - strand, within DDA3937_RS01565at 347.368 kb on + strand, within DDA3937_RS01565at 347.369 kb on - strand, within DDA3937_RS01565at 347.369 kb on - strand, within DDA3937_RS01565at 347.396 kb on + strand, within DDA3937_RS01565at 347.397 kb on - strand, within DDA3937_RS01565at 347.397 kb on - strand, within DDA3937_RS01565at 347.407 kb on + strand, within DDA3937_RS01565at 347.446 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.590 kb on - strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
346,119 + DDA3937_RS01560 0.21 -1.0
346,127 + DDA3937_RS01560 0.22 -1.1
346,128 - DDA3937_RS01560 0.22 -0.9
346,136 + DDA3937_RS01560 0.23 -2.4
346,266 - DDA3937_RS01560 0.36 +0.2
346,269 - DDA3937_RS01560 0.36 -2.4
346,273 + DDA3937_RS01560 0.37 +0.2
346,273 + DDA3937_RS01560 0.37 +0.5
346,274 - DDA3937_RS01560 0.37 +0.3
346,274 - DDA3937_RS01560 0.37 -0.7
346,274 - DDA3937_RS01560 0.37 -0.9
346,350 + DDA3937_RS01560 0.45 -1.4
346,351 - DDA3937_RS01560 0.45 +0.2
346,351 - DDA3937_RS01560 0.45 -2.2
346,351 - DDA3937_RS01560 0.45 -1.4
346,351 - DDA3937_RS01560 0.45 -0.7
346,463 + DDA3937_RS01560 0.57 -1.4
346,464 - DDA3937_RS01560 0.57 -1.4
346,464 - DDA3937_RS01560 0.57 -0.6
346,464 - DDA3937_RS01560 0.57 +0.2
346,530 + DDA3937_RS01560 0.64 -1.9
346,531 - +2.2
346,531 - DDA3937_RS01560 0.64 -2.1
346,531 - DDA3937_RS01560 0.64 -0.5
346,633 - DDA3937_RS01560 0.74 -1.4
346,633 - DDA3937_RS01560 0.74 -1.4
346,662 + DDA3937_RS01560 0.77 -1.0
346,663 - DDA3937_RS01560 0.77 -1.3
346,746 + DDA3937_RS01560 0.86 -0.4
346,747 - DDA3937_RS01560 0.86 +0.1
346,747 - DDA3937_RS01560 0.86 +0.2
346,747 - DDA3937_RS01560 0.86 +0.0
346,832 - -1.5
346,843 - -1.2
346,846 - -2.5
346,846 - -1.6
346,846 - -1.1
346,857 + -0.4
346,858 - -1.9
346,858 - -1.4
346,858 - -1.2
346,863 + -0.8
346,900 + +0.2
346,900 + -1.5
346,902 + -1.4
346,902 + +0.2
346,902 + -0.7
346,903 - +0.8
346,903 - +0.9
346,903 - -1.5
346,903 - -0.9
346,903 - +0.5
346,903 - -1.8
346,915 - +0.2
346,947 - +0.3
346,947 - -0.1
346,981 + -1.8
347,009 - +0.7
347,053 + -0.7
347,161 + +0.2
347,294 - DDA3937_RS01565 0.16 +0.2
347,368 + DDA3937_RS01565 0.25 -0.5
347,369 - DDA3937_RS01565 0.26 -0.7
347,369 - DDA3937_RS01565 0.26 +1.0
347,396 + DDA3937_RS01565 0.29 +0.5
347,397 - DDA3937_RS01565 0.29 -0.0
347,397 - DDA3937_RS01565 0.29 +0.6
347,407 + DDA3937_RS01565 0.30 -1.1
347,446 + DDA3937_RS01565 0.35 +1.4
347,494 + DDA3937_RS01565 0.41 +1.0
347,494 + DDA3937_RS01565 0.41 -2.4
347,494 + DDA3937_RS01565 0.41 -0.5
347,494 + DDA3937_RS01565 0.41 -1.0
347,495 - DDA3937_RS01565 0.41 -1.2
347,495 - DDA3937_RS01565 0.41 -1.4
347,495 - DDA3937_RS01565 0.41 -0.4
347,589 + DDA3937_RS01565 0.53 -0.6
347,589 + DDA3937_RS01565 0.53 -0.3
347,589 + DDA3937_RS01565 0.53 -1.9
347,590 - DDA3937_RS01565 0.53 -1.3
347,795 + DDA3937_RS01565 0.78 +0.2
347,795 + DDA3937_RS01565 0.78 -1.3
347,795 + DDA3937_RS01565 0.78 -1.5
347,796 - DDA3937_RS01565 0.78 -0.4
347,796 - DDA3937_RS01565 0.78 +0.7
347,796 - DDA3937_RS01565 0.78 +1.6
347,801 + DDA3937_RS01565 0.79 -0.8
347,801 + DDA3937_RS01565 0.79 -1.9
347,801 + DDA3937_RS01565 0.79 -0.8
347,801 + DDA3937_RS01565 0.79 -0.7
347,801 + DDA3937_RS01565 0.79 -0.6
347,801 + DDA3937_RS01565 0.79 -0.3
347,801 + DDA3937_RS01565 0.79 +0.4
347,801 + DDA3937_RS01565 0.79 -3.0
347,802 - DDA3937_RS01565 0.79 +0.5
347,802 - DDA3937_RS01565 0.79 -0.8
347,802 - DDA3937_RS01565 0.79 -1.6
347,802 - DDA3937_RS01565 0.79 +0.5
347,802 - DDA3937_RS01565 0.79 -0.4
347,802 - DDA3937_RS01565 0.79 -0.2
347,802 - DDA3937_RS01565 0.79 -1.2
347,802 - DDA3937_RS01565 0.79 +0.2

Or see this region's nucleotide sequence