Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01500 and DDA3937_RS01505 are separated by 66 nucleotides DDA3937_RS01505 and DDA3937_RS01510 are separated by 180 nucleotides DDA3937_RS01510 and DDA3937_RS01515 overlap by 4 nucleotides
DDA3937_RS01500: DDA3937_RS01500 - metalloprotease PmbA, at 336,777 to 338,117
_RS01500
DDA3937_RS01505: DDA3937_RS01505 - nucleoside diphosphate kinase regulator, at 338,184 to 338,594
_RS01505
DDA3937_RS01510: DDA3937_RS01510 - PTS phosphocarrier protein NPr, at 338,775 to 339,047
_RS01510
DDA3937_RS01515: DDA3937_RS01515 - RNase adapter RapZ, at 339,044 to 339,898
_RS01515
Position (kb) 338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 337.253 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.377 kb on + strand, within DDA3937_RS01500 at 337.378 kb on - strand, within DDA3937_RS01500 at 337.383 kb on + strand, within DDA3937_RS01500 at 337.475 kb on + strand, within DDA3937_RS01500 at 337.476 kb on - strand, within DDA3937_RS01500 at 337.572 kb on + strand, within DDA3937_RS01500 at 337.577 kb on + strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.770 kb on - strand, within DDA3937_RS01500 at 337.811 kb on + strand, within DDA3937_RS01500 at 337.812 kb on - strand, within DDA3937_RS01500 at 338.015 kb on + strand at 338.015 kb on + strand at 338.015 kb on + strand at 338.016 kb on - strand at 338.025 kb on - strand at 338.025 kb on - strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.182 kb on + strand at 338.183 kb on - strand at 338.194 kb on + strand at 338.218 kb on + strand at 338.218 kb on + strand at 338.277 kb on - strand, within DDA3937_RS01505 at 338.277 kb on - strand, within DDA3937_RS01505 at 338.381 kb on + strand, within DDA3937_RS01505 at 338.382 kb on - strand, within DDA3937_RS01505 at 338.423 kb on + strand, within DDA3937_RS01505 at 338.424 kb on - strand, within DDA3937_RS01505 at 338.571 kb on - strand at 338.589 kb on - strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.595 kb on - strand at 338.595 kb on - strand at 338.617 kb on - strand at 338.617 kb on - strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.660 kb on + strand at 338.661 kb on - strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.672 kb on - strand at 338.691 kb on + strand at 338.699 kb on - strand at 338.707 kb on - strand at 338.776 kb on + strand at 338.777 kb on - strand at 338.777 kb on - strand at 338.802 kb on + strand at 338.803 kb on - strand, within DDA3937_RS01510 at 338.811 kb on - strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.941 kb on - strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 339.083 kb on + strand at 339.083 kb on + strand at 339.084 kb on - strand at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.175 kb on + strand at 339.176 kb on - strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.225 kb on + strand, within DDA3937_RS01515 at 339.225 kb on + strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.240 kb on + strand, within DDA3937_RS01515 at 339.240 kb on + strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.337 kb on + strand, within DDA3937_RS01515 at 339.364 kb on - strand, within DDA3937_RS01515 at 339.364 kb on - strand, within DDA3937_RS01515 at 339.394 kb on - strand, within DDA3937_RS01515 at 339.394 kb on - strand, within DDA3937_RS01515 at 339.476 kb on + strand, within DDA3937_RS01515 at 339.476 kb on + strand, within DDA3937_RS01515 at 339.477 kb on - strand, within DDA3937_RS01515 at 339.493 kb on + strand, within DDA3937_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 337,253 + DDA3937_RS01500 0.35 -0.5 337,263 + DDA3937_RS01500 0.36 -1.5 337,263 + DDA3937_RS01500 0.36 +0.3 337,309 - DDA3937_RS01500 0.40 -0.8 337,309 - DDA3937_RS01500 0.40 -0.1 337,309 - DDA3937_RS01500 0.40 -0.5 337,377 + DDA3937_RS01500 0.45 +1.2 337,378 - DDA3937_RS01500 0.45 -0.1 337,383 + DDA3937_RS01500 0.45 +0.8 337,475 + DDA3937_RS01500 0.52 +0.3 337,476 - DDA3937_RS01500 0.52 +0.2 337,572 + DDA3937_RS01500 0.59 +0.5 337,577 + DDA3937_RS01500 0.60 +0.4 337,578 - DDA3937_RS01500 0.60 -0.3 337,578 - DDA3937_RS01500 0.60 -1.4 337,578 - DDA3937_RS01500 0.60 -0.4 337,578 - DDA3937_RS01500 0.60 -0.8 337,758 + DDA3937_RS01500 0.73 -1.3 337,758 + DDA3937_RS01500 0.73 -0.8 337,758 + DDA3937_RS01500 0.73 +0.2 337,758 + DDA3937_RS01500 0.73 +0.5 337,758 + DDA3937_RS01500 0.73 +0.7 337,758 + DDA3937_RS01500 0.73 +0.2 337,759 - DDA3937_RS01500 0.73 +0.2 337,759 - DDA3937_RS01500 0.73 -0.1 337,759 - DDA3937_RS01500 0.73 -1.4 337,770 - DDA3937_RS01500 0.74 +0.0 337,811 + DDA3937_RS01500 0.77 -0.6 337,812 - DDA3937_RS01500 0.77 -0.3 338,015 + -1.1 338,015 + -0.9 338,015 + -0.5 338,016 - -2.2 338,025 - -1.7 338,025 - -0.2 338,113 + -1.5 338,113 + -0.5 338,113 + +0.1 338,115 + -0.5 338,115 + -1.0 338,115 + +0.1 338,115 + +0.2 338,115 + -0.8 338,116 - -2.5 338,116 - -0.3 338,116 - -1.3 338,116 - -0.4 338,182 + +1.0 338,183 - +0.2 338,194 + -0.6 338,218 + -2.1 338,218 + +1.6 338,277 - DDA3937_RS01505 0.23 -1.1 338,277 - DDA3937_RS01505 0.23 -0.4 338,381 + DDA3937_RS01505 0.48 -1.6 338,382 - DDA3937_RS01505 0.48 -3.1 338,423 + DDA3937_RS01505 0.58 -1.8 338,424 - DDA3937_RS01505 0.58 -0.4 338,571 - -0.2 338,589 - -1.1 338,594 + +0.2 338,594 + +0.5 338,594 + -0.9 338,595 - +0.2 338,595 - -1.1 338,617 - -0.5 338,617 - +0.3 338,655 + -2.6 338,655 + +0.4 338,655 + +1.4 338,655 + +1.2 338,656 - -0.9 338,656 - +2.3 338,656 - -0.4 338,660 + -0.3 338,661 - -2.0 338,671 + +0.2 338,671 + -1.5 338,671 + +1.0 338,672 - +0.2 338,691 + -0.4 338,699 - +0.5 338,707 - +1.0 338,776 + -0.4 338,777 - -0.6 338,777 - +3.5 338,802 + -2.2 338,803 - DDA3937_RS01510 0.10 -1.7 338,811 - DDA3937_RS01510 0.13 -1.9 338,940 + DDA3937_RS01510 0.60 +0.2 338,940 + DDA3937_RS01510 0.60 +0.2 338,941 - DDA3937_RS01510 0.61 -1.1 338,967 + DDA3937_RS01510 0.70 -0.1 338,967 + DDA3937_RS01510 0.70 -0.2 339,083 + -1.1 339,083 + +1.4 339,084 - +0.2 339,132 + DDA3937_RS01515 0.10 -0.3 339,132 + DDA3937_RS01515 0.10 +1.0 339,132 + DDA3937_RS01515 0.10 +0.4 339,132 + DDA3937_RS01515 0.10 +0.0 339,133 - DDA3937_RS01515 0.10 -1.1 339,133 - DDA3937_RS01515 0.10 -1.0 339,133 - DDA3937_RS01515 0.10 -0.1 339,175 + +2.2 339,176 - DDA3937_RS01515 0.15 -0.8 339,180 + DDA3937_RS01515 0.16 -1.0 339,180 + DDA3937_RS01515 0.16 -1.2 339,180 + DDA3937_RS01515 0.16 +0.6 339,180 + DDA3937_RS01515 0.16 -0.5 339,181 - DDA3937_RS01515 0.16 -0.4 339,181 - DDA3937_RS01515 0.16 -0.2 339,181 - DDA3937_RS01515 0.16 +0.3 339,181 - DDA3937_RS01515 0.16 -1.6 339,181 - DDA3937_RS01515 0.16 -0.3 339,225 + DDA3937_RS01515 0.21 +0.4 339,225 + DDA3937_RS01515 0.21 +1.6 339,226 - DDA3937_RS01515 0.21 -0.8 339,226 - DDA3937_RS01515 0.21 -0.9 339,226 - DDA3937_RS01515 0.21 -1.5 339,240 + DDA3937_RS01515 0.23 -0.8 339,240 + DDA3937_RS01515 0.23 -0.6 339,241 - DDA3937_RS01515 0.23 -0.7 339,241 - DDA3937_RS01515 0.23 -0.0 339,241 - DDA3937_RS01515 0.23 -0.4 339,241 - DDA3937_RS01515 0.23 -2.1 339,241 - DDA3937_RS01515 0.23 -0.2 339,337 + DDA3937_RS01515 0.34 +0.4 339,364 - DDA3937_RS01515 0.37 +1.4 339,364 - DDA3937_RS01515 0.37 -0.0 339,394 - DDA3937_RS01515 0.41 -0.8 339,394 - DDA3937_RS01515 0.41 +0.9 339,476 + DDA3937_RS01515 0.51 +0.5 339,476 + DDA3937_RS01515 0.51 -1.5 339,477 - DDA3937_RS01515 0.51 +0.6 339,493 + DDA3937_RS01515 0.53 -0.1
Or see this region's nucleotide sequence