Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01330 and DDA3937_RS23390 are separated by 111 nucleotides DDA3937_RS23390 and DDA3937_RS01340 are separated by 189 nucleotides DDA3937_RS01340 and DDA3937_RS01345 overlap by 8 nucleotides DDA3937_RS01345 and DDA3937_RS01350 overlap by 4 nucleotides
DDA3937_RS01330: DDA3937_RS01330 - AlpA family phage regulatory protein, at 298,760 to 298,984
_RS01330
DDA3937_RS23390: DDA3937_RS23390 - hypothetical protein, at 299,096 to 299,290
_RS23390
DDA3937_RS01340: DDA3937_RS01340 - hypothetical protein, at 299,480 to 299,701
_RS01340
DDA3937_RS01345: DDA3937_RS01345 - hypothetical protein, at 299,694 to 299,909
_RS01345
DDA3937_RS01350: DDA3937_RS01350 - DNA primase, at 299,906 to 301,675
_RS01350
Position (kb) 299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 298.700 kb on + strand at 298.771 kb on + strand at 298.800 kb on + strand, within DDA3937_RS01330 at 298.803 kb on + strand, within DDA3937_RS01330 at 298.804 kb on - strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.896 kb on + strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.897 kb on - strand, within DDA3937_RS01330 at 298.963 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.987 kb on + strand at 298.988 kb on - strand at 298.988 kb on - strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.992 kb on - strand at 298.992 kb on - strand at 298.992 kb on - strand at 299.000 kb on + strand at 299.000 kb on + strand at 299.047 kb on + strand at 299.063 kb on + strand at 299.064 kb on - strand at 299.064 kb on - strand at 299.093 kb on + strand at 299.093 kb on + strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.094 kb on - strand at 299.116 kb on + strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.117 kb on - strand, within DDA3937_RS23390 at 299.310 kb on - strand at 299.345 kb on - strand at 299.369 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.458 kb on + strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.459 kb on - strand at 299.479 kb on + strand at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.537 kb on - strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.570 kb on + strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.571 kb on - strand, within DDA3937_RS01340 at 299.649 kb on + strand, within DDA3937_RS01340 at 299.650 kb on - strand, within DDA3937_RS01340 at 299.656 kb on - strand, within DDA3937_RS01340 at 299.705 kb on + strand at 299.741 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.765 kb on + strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.766 kb on - strand, within DDA3937_RS01345 at 299.768 kb on + strand, within DDA3937_RS01345 at 299.769 kb on - strand, within DDA3937_RS01345 at 299.813 kb on + strand, within DDA3937_RS01345 at 299.813 kb on + strand, within DDA3937_RS01345 at 299.834 kb on + strand, within DDA3937_RS01345 at 299.857 kb on + strand, within DDA3937_RS01345 at 299.857 kb on + strand, within DDA3937_RS01345 at 299.858 kb on - strand, within DDA3937_RS01345 at 299.962 kb on - strand at 299.962 kb on - strand at 300.014 kb on - strand at 300.016 kb on + strand at 300.016 kb on + strand at 300.017 kb on - strand at 300.017 kb on - strand at 300.017 kb on - strand at 300.032 kb on - strand at 300.032 kb on - strand at 300.034 kb on - strand at 300.034 kb on - strand at 300.034 kb on - strand at 300.041 kb on - strand at 300.041 kb on - strand at 300.041 kb on - strand at 300.046 kb on - strand at 300.064 kb on + strand at 300.064 kb on + strand at 300.085 kb on + strand, within DDA3937_RS01350 at 300.085 kb on + strand, within DDA3937_RS01350 at 300.085 kb on + strand, within DDA3937_RS01350 at 300.085 kb on + strand, within DDA3937_RS01350 at 300.086 kb on - strand, within DDA3937_RS01350 at 300.086 kb on - strand, within DDA3937_RS01350 at 300.086 kb on - strand, within DDA3937_RS01350 at 300.087 kb on + strand, within DDA3937_RS01350 at 300.088 kb on - strand, within DDA3937_RS01350 at 300.088 kb on - strand, within DDA3937_RS01350 at 300.088 kb on - strand, within DDA3937_RS01350 at 300.088 kb on - strand, within DDA3937_RS01350 at 300.107 kb on + strand, within DDA3937_RS01350 at 300.107 kb on + strand, within DDA3937_RS01350 at 300.108 kb on - strand, within DDA3937_RS01350 at 300.203 kb on + strand, within DDA3937_RS01350 at 300.203 kb on + strand, within DDA3937_RS01350 at 300.203 kb on + strand, within DDA3937_RS01350 at 300.204 kb on - strand, within DDA3937_RS01350 at 300.256 kb on + strand, within DDA3937_RS01350 at 300.256 kb on + strand, within DDA3937_RS01350 at 300.256 kb on + strand, within DDA3937_RS01350 at 300.257 kb on - strand, within DDA3937_RS01350 at 300.257 kb on - strand, within DDA3937_RS01350 at 300.257 kb on - strand, within DDA3937_RS01350 at 300.257 kb on - strand, within DDA3937_RS01350 at 300.257 kb on - strand, within DDA3937_RS01350 at 300.259 kb on + strand, within DDA3937_RS01350 at 300.259 kb on + strand, within DDA3937_RS01350 at 300.294 kb on + strand, within DDA3937_RS01350 at 300.294 kb on + strand, within DDA3937_RS01350 at 300.294 kb on + strand, within DDA3937_RS01350 at 300.294 kb on + strand, within DDA3937_RS01350 at 300.295 kb on - strand, within DDA3937_RS01350 at 300.295 kb on - strand, within DDA3937_RS01350 at 300.295 kb on - strand, within DDA3937_RS01350 at 300.295 kb on - strand, within DDA3937_RS01350 at 300.320 kb on - strand, within DDA3937_RS01350 at 300.350 kb on + strand, within DDA3937_RS01350 at 300.351 kb on - strand, within DDA3937_RS01350 at 300.370 kb on - strand, within DDA3937_RS01350 at 300.398 kb on + strand, within DDA3937_RS01350 at 300.398 kb on + strand, within DDA3937_RS01350 at 300.399 kb on - strand, within DDA3937_RS01350 at 300.399 kb on - strand, within DDA3937_RS01350 at 300.438 kb on + strand, within DDA3937_RS01350 at 300.439 kb on - strand, within DDA3937_RS01350 at 300.475 kb on + strand, within DDA3937_RS01350 at 300.475 kb on + strand, within DDA3937_RS01350 at 300.476 kb on - strand, within DDA3937_RS01350 at 300.476 kb on - strand, within DDA3937_RS01350 at 300.482 kb on + strand, within DDA3937_RS01350 at 300.500 kb on - strand, within DDA3937_RS01350 at 300.517 kb on + strand, within DDA3937_RS01350 at 300.517 kb on + strand, within DDA3937_RS01350 at 300.518 kb on - strand, within DDA3937_RS01350 at 300.518 kb on - strand, within DDA3937_RS01350 at 300.518 kb on - strand, within DDA3937_RS01350 at 300.525 kb on + strand, within DDA3937_RS01350 at 300.561 kb on + strand, within DDA3937_RS01350 at 300.616 kb on + strand, within DDA3937_RS01350 at 300.616 kb on + strand, within DDA3937_RS01350 at 300.617 kb on - strand, within DDA3937_RS01350 at 300.639 kb on + strand, within DDA3937_RS01350 at 300.658 kb on + strand, within DDA3937_RS01350 at 300.775 kb on + strand, within DDA3937_RS01350 at 300.776 kb on - strand, within DDA3937_RS01350 at 300.776 kb on - strand, within DDA3937_RS01350 at 300.776 kb on - strand, within DDA3937_RS01350 at 300.807 kb on + strand, within DDA3937_RS01350 at 300.808 kb on - strand, within DDA3937_RS01350 at 300.808 kb on - strand, within DDA3937_RS01350 at 300.821 kb on - strand, within DDA3937_RS01350 at 300.841 kb on + strand, within DDA3937_RS01350 at 300.841 kb on + strand, within DDA3937_RS01350 at 300.905 kb on - strand, within DDA3937_RS01350 at 300.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 298,700 + -0.6 298,771 + -0.1 298,800 + DDA3937_RS01330 0.18 +0.2 298,803 + DDA3937_RS01330 0.19 -1.2 298,804 - DDA3937_RS01330 0.20 -0.7 298,896 + DDA3937_RS01330 0.60 -1.4 298,896 + DDA3937_RS01330 0.60 -1.6 298,897 - DDA3937_RS01330 0.61 -0.1 298,897 - DDA3937_RS01330 0.61 +1.0 298,897 - DDA3937_RS01330 0.61 -0.1 298,963 + +0.0 298,987 + -2.9 298,987 + +0.3 298,987 + +0.2 298,987 + -2.0 298,987 + -1.1 298,988 - +1.4 298,988 - -0.1 298,991 + -1.1 298,991 + -0.8 298,991 + -0.5 298,991 + -1.1 298,991 + +0.4 298,992 - +0.2 298,992 - +1.4 298,992 - -0.1 299,000 + +0.1 299,000 + -2.6 299,047 + -0.9 299,063 + -0.5 299,064 - -2.3 299,064 - -1.6 299,093 + -0.4 299,093 + -0.7 299,094 - -0.2 299,094 - -0.8 299,094 - -1.0 299,116 + DDA3937_RS23390 0.10 -0.5 299,117 - DDA3937_RS23390 0.11 +0.1 299,117 - DDA3937_RS23390 0.11 -0.1 299,117 - DDA3937_RS23390 0.11 -0.7 299,310 - -1.8 299,345 - -1.1 299,369 + +1.5 299,458 + -0.8 299,458 + +0.0 299,458 + +0.3 299,458 + -0.6 299,458 + -1.8 299,458 + -0.5 299,459 - -1.8 299,459 - -0.0 299,459 - +0.3 299,459 - -0.2 299,459 - -1.2 299,459 - +0.1 299,459 - +0.1 299,459 - +0.9 299,459 - +0.0 299,459 - -0.1 299,479 + -0.5 299,537 - -0.8 299,537 - DDA3937_RS01340 0.26 +0.3 299,537 - DDA3937_RS01340 0.26 -0.6 299,537 - DDA3937_RS01340 0.26 -0.2 299,537 - +0.5 299,537 - DDA3937_RS01340 0.26 -0.4 299,537 - DDA3937_RS01340 0.26 +0.2 299,537 - DDA3937_RS01340 0.26 +0.1 299,570 + DDA3937_RS01340 0.41 +0.2 299,570 + DDA3937_RS01340 0.41 -0.4 299,570 + DDA3937_RS01340 0.41 +0.5 299,570 + DDA3937_RS01340 0.41 -1.9 299,571 - DDA3937_RS01340 0.41 +0.1 299,571 - DDA3937_RS01340 0.41 +0.0 299,571 - DDA3937_RS01340 0.41 -1.2 299,649 + DDA3937_RS01340 0.76 +0.2 299,650 - DDA3937_RS01340 0.77 +0.0 299,656 - DDA3937_RS01340 0.79 -0.3 299,705 + -0.6 299,741 + DDA3937_RS01345 0.22 -0.7 299,765 + DDA3937_RS01345 0.33 +0.6 299,765 + DDA3937_RS01345 0.33 +0.7 299,765 + DDA3937_RS01345 0.33 -0.7 299,765 + DDA3937_RS01345 0.33 +0.6 299,765 + DDA3937_RS01345 0.33 -1.4 299,766 - DDA3937_RS01345 0.33 -0.2 299,766 - DDA3937_RS01345 0.33 +0.3 299,766 - DDA3937_RS01345 0.33 -0.5 299,766 - DDA3937_RS01345 0.33 +1.1 299,766 - DDA3937_RS01345 0.33 +0.2 299,766 - DDA3937_RS01345 0.33 +0.8 299,768 + DDA3937_RS01345 0.34 +0.5 299,769 - DDA3937_RS01345 0.35 -0.1 299,813 + DDA3937_RS01345 0.55 +1.1 299,813 + DDA3937_RS01345 0.55 +0.9 299,834 + DDA3937_RS01345 0.65 +0.9 299,857 + DDA3937_RS01345 0.75 +0.2 299,857 + DDA3937_RS01345 0.75 +0.0 299,858 - DDA3937_RS01345 0.76 -1.4 299,962 - +1.2 299,962 - -0.1 300,014 - -1.7 300,016 + +0.2 300,016 + -0.7 300,017 - -0.1 300,017 - -1.4 300,017 - -1.5 300,032 - -0.8 300,032 - -1.2 300,034 - -0.1 300,034 - +0.0 300,034 - -1.8 300,041 - -0.9 300,041 - +0.2 300,041 - +3.8 300,046 - -2.0 300,064 + -0.6 300,064 + -0.0 300,085 + DDA3937_RS01350 0.10 -1.2 300,085 + DDA3937_RS01350 0.10 -2.4 300,085 + DDA3937_RS01350 0.10 -1.3 300,085 + DDA3937_RS01350 0.10 -0.7 300,086 - DDA3937_RS01350 0.10 -0.1 300,086 - DDA3937_RS01350 0.10 +0.3 300,086 - DDA3937_RS01350 0.10 -0.4 300,087 + DDA3937_RS01350 0.10 +0.6 300,088 - DDA3937_RS01350 0.10 -1.0 300,088 - DDA3937_RS01350 0.10 -0.6 300,088 - DDA3937_RS01350 0.10 -0.5 300,088 - DDA3937_RS01350 0.10 -0.7 300,107 + DDA3937_RS01350 0.11 -0.9 300,107 + DDA3937_RS01350 0.11 -1.3 300,108 - DDA3937_RS01350 0.11 +0.2 300,203 + DDA3937_RS01350 0.17 +1.9 300,203 + DDA3937_RS01350 0.17 +0.1 300,203 + DDA3937_RS01350 0.17 +0.2 300,204 - DDA3937_RS01350 0.17 +0.4 300,256 + DDA3937_RS01350 0.20 -2.0 300,256 + DDA3937_RS01350 0.20 +8.8 300,256 + DDA3937_RS01350 0.20 -0.5 300,257 - DDA3937_RS01350 0.20 +0.5 300,257 - DDA3937_RS01350 0.20 +0.2 300,257 - DDA3937_RS01350 0.20 -1.0 300,257 - DDA3937_RS01350 0.20 -0.1 300,257 - DDA3937_RS01350 0.20 -0.7 300,259 + DDA3937_RS01350 0.20 -1.9 300,259 + DDA3937_RS01350 0.20 -1.6 300,294 + DDA3937_RS01350 0.22 -0.1 300,294 + DDA3937_RS01350 0.22 -0.1 300,294 + DDA3937_RS01350 0.22 +0.1 300,294 + DDA3937_RS01350 0.22 +0.6 300,295 - DDA3937_RS01350 0.22 +0.6 300,295 - DDA3937_RS01350 0.22 -0.1 300,295 - DDA3937_RS01350 0.22 -0.2 300,295 - DDA3937_RS01350 0.22 +1.2 300,320 - DDA3937_RS01350 0.23 -0.4 300,350 + DDA3937_RS01350 0.25 -0.6 300,351 - DDA3937_RS01350 0.25 +1.2 300,370 - DDA3937_RS01350 0.26 -0.6 300,398 + DDA3937_RS01350 0.28 -1.8 300,398 + DDA3937_RS01350 0.28 +0.9 300,399 - DDA3937_RS01350 0.28 -0.9 300,399 - DDA3937_RS01350 0.28 -1.3 300,438 + DDA3937_RS01350 0.30 -0.9 300,439 - DDA3937_RS01350 0.30 -0.0 300,475 + DDA3937_RS01350 0.32 -0.0 300,475 + DDA3937_RS01350 0.32 +0.7 300,476 - DDA3937_RS01350 0.32 +0.1 300,476 - DDA3937_RS01350 0.32 -1.6 300,482 + DDA3937_RS01350 0.33 +0.4 300,500 - DDA3937_RS01350 0.34 +1.1 300,517 + DDA3937_RS01350 0.35 +1.3 300,517 + DDA3937_RS01350 0.35 -0.3 300,518 - DDA3937_RS01350 0.35 +0.0 300,518 - DDA3937_RS01350 0.35 +0.6 300,518 - DDA3937_RS01350 0.35 -0.1 300,525 + DDA3937_RS01350 0.35 -0.3 300,561 + DDA3937_RS01350 0.37 -0.1 300,616 + DDA3937_RS01350 0.40 -0.6 300,616 + DDA3937_RS01350 0.40 -0.9 300,617 - DDA3937_RS01350 0.40 -1.9 300,639 + DDA3937_RS01350 0.41 -0.1 300,658 + DDA3937_RS01350 0.42 -0.1 300,775 + DDA3937_RS01350 0.49 -0.5 300,776 - DDA3937_RS01350 0.49 -0.0 300,776 - DDA3937_RS01350 0.49 +0.9 300,776 - DDA3937_RS01350 0.49 +0.4 300,807 + DDA3937_RS01350 0.51 -0.3 300,808 - DDA3937_RS01350 0.51 -0.2 300,808 - DDA3937_RS01350 0.51 +0.2 300,821 - DDA3937_RS01350 0.52 -0.6 300,841 + DDA3937_RS01350 0.53 -1.4 300,841 + DDA3937_RS01350 0.53 -0.4 300,905 - DDA3937_RS01350 0.56 +0.2 300,905 - +1.2
Or see this region's nucleotide sequence