Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01275 and DDA3937_RS01280 are separated by 114 nucleotides DDA3937_RS01280 and DDA3937_RS01285 are separated by 25 nucleotides
DDA3937_RS01275: DDA3937_RS01275 - CTP synthase, at 288,691 to 289,386
_RS01275
DDA3937_RS01280: DDA3937_RS01280 - amino acid ABC transporter permease, at 289,501 to 290,166
_RS01280
DDA3937_RS01285: DDA3937_RS01285 - amino acid ABC transporter substrate-binding protein, at 290,192 to 290,962
_RS01285
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 288.533 kb on + strand at 288.534 kb on - strand at 288.537 kb on + strand at 288.538 kb on - strand at 288.538 kb on - strand at 288.545 kb on + strand at 288.546 kb on - strand at 288.559 kb on + strand at 288.596 kb on + strand at 288.596 kb on + strand at 288.597 kb on - strand at 288.598 kb on + strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.619 kb on + strand at 288.620 kb on - strand at 288.697 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.740 kb on - strand at 288.749 kb on - strand at 288.820 kb on - strand, within DDA3937_RS01275 at 288.850 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 289.047 kb on + strand, within DDA3937_RS01275 at 289.048 kb on - strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.083 kb on - strand, within DDA3937_RS01275 at 289.097 kb on + strand, within DDA3937_RS01275 at 289.167 kb on + strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.244 kb on - strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.247 kb on - strand, within DDA3937_RS01275 at 289.349 kb on + strand at 289.349 kb on + strand at 289.350 kb on - strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.358 kb on - strand at 289.404 kb on - strand at 289.499 kb on + strand at 289.523 kb on + strand at 289.524 kb on - strand at 289.524 kb on - strand at 289.526 kb on + strand at 289.551 kb on + strand at 289.552 kb on - strand at 289.552 kb on - strand at 289.552 kb on - strand at 289.555 kb on + strand at 289.555 kb on + strand at 289.556 kb on - strand at 289.556 kb on - strand at 289.556 kb on - strand at 289.578 kb on - strand, within DDA3937_RS01280 at 289.597 kb on - strand, within DDA3937_RS01280 at 289.598 kb on + strand, within DDA3937_RS01280 at 289.599 kb on - strand, within DDA3937_RS01280 at 289.599 kb on - strand, within DDA3937_RS01280 at 289.599 kb on - strand, within DDA3937_RS01280 at 289.616 kb on + strand, within DDA3937_RS01280 at 289.632 kb on + strand, within DDA3937_RS01280 at 289.633 kb on - strand, within DDA3937_RS01280 at 289.633 kb on - strand, within DDA3937_RS01280 at 289.704 kb on + strand, within DDA3937_RS01280 at 289.710 kb on + strand, within DDA3937_RS01280 at 289.711 kb on - strand, within DDA3937_RS01280 at 289.714 kb on - strand, within DDA3937_RS01280 at 289.714 kb on - strand, within DDA3937_RS01280 at 289.738 kb on + strand, within DDA3937_RS01280 at 289.797 kb on - strand, within DDA3937_RS01280 at 289.797 kb on - strand, within DDA3937_RS01280 at 289.833 kb on + strand, within DDA3937_RS01280 at 289.859 kb on + strand, within DDA3937_RS01280 at 289.937 kb on + strand, within DDA3937_RS01280 at 289.964 kb on - strand at 289.991 kb on + strand, within DDA3937_RS01280 at 290.028 kb on - strand, within DDA3937_RS01280 at 290.152 kb on + strand at 290.152 kb on + strand at 290.152 kb on + strand at 290.153 kb on - strand at 290.153 kb on - strand at 290.169 kb on - strand at 290.193 kb on + strand at 290.193 kb on + strand at 290.194 kb on - strand at 290.194 kb on - strand at 290.217 kb on + strand at 290.218 kb on - strand at 290.236 kb on + strand at 290.237 kb on - strand at 290.238 kb on + strand at 290.238 kb on + strand at 290.238 kb on + strand at 290.238 kb on + strand at 290.239 kb on - strand at 290.239 kb on - strand at 290.239 kb on - strand at 290.239 kb on - strand at 290.405 kb on - strand, within DDA3937_RS01285 at 290.405 kb on - strand, within DDA3937_RS01285 at 290.490 kb on + strand, within DDA3937_RS01285 at 290.491 kb on - strand, within DDA3937_RS01285 at 290.491 kb on - strand, within DDA3937_RS01285 at 290.491 kb on - strand at 290.511 kb on + strand, within DDA3937_RS01285 at 290.511 kb on + strand, within DDA3937_RS01285 at 290.578 kb on + strand, within DDA3937_RS01285 at 290.579 kb on - strand, within DDA3937_RS01285 at 290.614 kb on + strand, within DDA3937_RS01285 at 290.615 kb on - strand, within DDA3937_RS01285 at 290.616 kb on + strand, within DDA3937_RS01285 at 290.616 kb on + strand, within DDA3937_RS01285 at 290.616 kb on + strand, within DDA3937_RS01285 at 290.617 kb on - strand, within DDA3937_RS01285 at 290.617 kb on - strand, within DDA3937_RS01285 at 290.634 kb on + strand, within DDA3937_RS01285 at 290.635 kb on - strand, within DDA3937_RS01285 at 290.635 kb on - strand, within DDA3937_RS01285 at 290.699 kb on + strand, within DDA3937_RS01285 at 290.700 kb on - strand, within DDA3937_RS01285 at 290.796 kb on - strand, within DDA3937_RS01285 at 290.820 kb on + strand, within DDA3937_RS01285 at 290.820 kb on + strand, within DDA3937_RS01285 at 290.820 kb on + strand, within DDA3937_RS01285 at 290.820 kb on + strand, within DDA3937_RS01285 at 290.820 kb on + strand, within DDA3937_RS01285 at 290.821 kb on - strand, within DDA3937_RS01285 at 290.821 kb on - strand, within DDA3937_RS01285 at 290.826 kb on + strand, within DDA3937_RS01285 at 290.826 kb on + strand, within DDA3937_RS01285 at 290.826 kb on + strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.827 kb on - strand, within DDA3937_RS01285 at 290.835 kb on + strand, within DDA3937_RS01285 at 290.835 kb on + strand, within DDA3937_RS01285 at 290.835 kb on + strand, within DDA3937_RS01285 at 290.835 kb on + strand, within DDA3937_RS01285 at 290.835 kb on + strand, within DDA3937_RS01285 at 290.835 kb on + strand, within DDA3937_RS01285 at 290.836 kb on - strand, within DDA3937_RS01285 at 290.836 kb on - strand at 290.836 kb on - strand, within DDA3937_RS01285 at 290.836 kb on - strand, within DDA3937_RS01285 at 290.836 kb on - strand, within DDA3937_RS01285 at 290.836 kb on - strand, within DDA3937_RS01285 at 290.836 kb on - strand, within DDA3937_RS01285 at 290.836 kb on - strand, within DDA3937_RS01285 at 290.836 kb on - strand, within DDA3937_RS01285 at 290.857 kb on + strand, within DDA3937_RS01285 at 290.858 kb on - strand, within DDA3937_RS01285 at 290.858 kb on - strand, within DDA3937_RS01285 at 290.939 kb on + strand at 290.939 kb on + strand at 290.939 kb on + strand at 290.939 kb on + strand at 290.939 kb on + strand at 290.940 kb on - strand at 290.940 kb on - strand at 290.940 kb on - strand at 290.940 kb on - strand at 290.940 kb on - strand at 290.940 kb on - strand at 290.940 kb on - strand at 290.965 kb on + strand at 290.965 kb on + strand at 290.965 kb on + strand at 290.965 kb on + strand at 290.965 kb on + strand at 290.965 kb on + strand at 290.966 kb on - strand at 290.966 kb on - strand at 290.966 kb on - strand at 290.966 kb on - strand at 290.979 kb on + strand at 290.979 kb on + strand at 290.980 kb on - strand at 290.985 kb on + strand at 290.996 kb on + strand at 290.996 kb on + strand at 290.997 kb on - strand at 290.997 kb on - strand at 291.018 kb on + strand at 291.019 kb on - strand at 291.044 kb on + strand at 291.044 kb on + strand at 291.045 kb on - strand at 291.049 kb on - strand at 291.049 kb on - strand at 291.061 kb on + strand at 291.061 kb on + strand at 291.061 kb on + strand at 291.061 kb on + strand at 291.061 kb on + strand at 291.061 kb on + strand at 291.061 kb on + strand at 291.061 kb on + strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.062 kb on - strand at 291.063 kb on + strand at 291.063 kb on + strand at 291.063 kb on + strand at 291.063 kb on + strand at 291.064 kb on - strand at 291.064 kb on - strand at 291.071 kb on - strand at 291.071 kb on - strand at 291.071 kb on - strand at 291.076 kb on + strand at 291.076 kb on + strand at 291.076 kb on + strand at 291.077 kb on - strand at 291.077 kb on - strand at 291.077 kb on - strand at 291.077 kb on - strand at 291.077 kb on - strand at 291.078 kb on + strand at 291.078 kb on + strand at 291.079 kb on - strand at 291.079 kb on - strand at 291.079 kb on - strand at 291.092 kb on - strand at 291.139 kb on + strand at 291.140 kb on - strand at 291.140 kb on - strand at 291.140 kb on - strand at 291.141 kb on + strand at 291.141 kb on + strand at 291.141 kb on + strand at 291.141 kb on + strand at 291.141 kb on + strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.142 kb on - strand at 291.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 288,533 + -1.2 288,534 - +0.3 288,537 + -0.4 288,538 - -0.2 288,538 - -0.1 288,545 + -0.7 288,546 - -0.7 288,559 + -0.2 288,596 + -0.8 288,596 + +0.5 288,597 - +0.3 288,598 + +0.2 288,599 - -1.6 288,599 - +0.0 288,599 - -0.9 288,599 - -0.6 288,619 + -1.2 288,620 - +0.2 288,697 + +0.3 288,739 + +0.7 288,739 + -1.3 288,739 + -0.3 288,740 - -1.1 288,749 - -0.8 288,820 - DDA3937_RS01275 0.19 -0.6 288,850 + DDA3937_RS01275 0.23 -1.6 288,972 + DDA3937_RS01275 0.40 -0.0 288,972 + DDA3937_RS01275 0.40 -0.1 289,047 + DDA3937_RS01275 0.51 +1.9 289,048 - DDA3937_RS01275 0.51 -2.2 289,050 + DDA3937_RS01275 0.52 +0.2 289,050 + DDA3937_RS01275 0.52 -1.2 289,083 - DDA3937_RS01275 0.56 -2.4 289,097 + DDA3937_RS01275 0.58 -0.4 289,167 + DDA3937_RS01275 0.68 +0.1 289,168 - DDA3937_RS01275 0.69 +0.2 289,168 - DDA3937_RS01275 0.69 +1.1 289,244 - DDA3937_RS01275 0.79 +0.8 289,246 + DDA3937_RS01275 0.80 -1.9 289,246 + DDA3937_RS01275 0.80 +0.8 289,246 + DDA3937_RS01275 0.80 -1.4 289,246 + DDA3937_RS01275 0.80 -3.4 289,246 + DDA3937_RS01275 0.80 -0.1 289,247 - DDA3937_RS01275 0.80 -1.4 289,349 + -0.7 289,349 + +2.7 289,350 - -0.0 289,357 + -2.2 289,357 + -0.8 289,357 + -0.7 289,357 + +0.4 289,358 - -1.8 289,404 - -0.4 289,499 + -1.8 289,523 + -0.2 289,524 - -0.5 289,524 - -0.5 289,526 + +1.2 289,551 + -0.8 289,552 - -1.4 289,552 - +0.1 289,552 - -0.3 289,555 + -0.7 289,555 + -0.6 289,556 - -0.3 289,556 - -1.3 289,556 - -0.8 289,578 - DDA3937_RS01280 0.12 -0.4 289,597 - DDA3937_RS01280 0.14 +0.5 289,598 + DDA3937_RS01280 0.15 +0.6 289,599 - DDA3937_RS01280 0.15 +0.1 289,599 - DDA3937_RS01280 0.15 +0.4 289,599 - DDA3937_RS01280 0.15 -0.8 289,616 + DDA3937_RS01280 0.17 -0.4 289,632 + DDA3937_RS01280 0.20 -0.3 289,633 - DDA3937_RS01280 0.20 +0.6 289,633 - DDA3937_RS01280 0.20 -0.2 289,704 + DDA3937_RS01280 0.30 +1.0 289,710 + DDA3937_RS01280 0.31 -0.1 289,711 - DDA3937_RS01280 0.32 +3.0 289,714 - DDA3937_RS01280 0.32 +0.9 289,714 - DDA3937_RS01280 0.32 -0.8 289,738 + DDA3937_RS01280 0.36 -1.1 289,797 - DDA3937_RS01280 0.44 -1.6 289,797 - DDA3937_RS01280 0.44 -0.4 289,833 + DDA3937_RS01280 0.50 -1.2 289,859 + DDA3937_RS01280 0.54 +1.8 289,937 + DDA3937_RS01280 0.65 -0.5 289,964 - +0.2 289,991 + DDA3937_RS01280 0.74 +1.0 290,028 - DDA3937_RS01280 0.79 -0.3 290,152 + -1.1 290,152 + -0.1 290,152 + -0.7 290,153 - -0.4 290,153 - -1.1 290,169 - +1.2 290,193 + +0.1 290,193 + -1.6 290,194 - -0.7 290,194 - -0.2 290,217 + +0.6 290,218 - -2.9 290,236 + -0.1 290,237 - -0.1 290,238 + -0.4 290,238 + +0.2 290,238 + -0.2 290,238 + +0.6 290,239 - -1.8 290,239 - -0.7 290,239 - -0.6 290,239 - -1.1 290,405 - DDA3937_RS01285 0.28 +0.8 290,405 - DDA3937_RS01285 0.28 -0.5 290,490 + DDA3937_RS01285 0.39 +0.8 290,491 - DDA3937_RS01285 0.39 -0.4 290,491 - DDA3937_RS01285 0.39 -1.1 290,491 - +0.5 290,511 + DDA3937_RS01285 0.41 -0.6 290,511 + DDA3937_RS01285 0.41 -0.4 290,578 + DDA3937_RS01285 0.50 -0.1 290,579 - DDA3937_RS01285 0.50 -0.5 290,614 + DDA3937_RS01285 0.55 -0.7 290,615 - DDA3937_RS01285 0.55 -1.6 290,616 + DDA3937_RS01285 0.55 -0.2 290,616 + DDA3937_RS01285 0.55 +0.0 290,616 + DDA3937_RS01285 0.55 -1.6 290,617 - DDA3937_RS01285 0.55 +1.8 290,617 - DDA3937_RS01285 0.55 -0.8 290,634 + DDA3937_RS01285 0.57 -0.9 290,635 - DDA3937_RS01285 0.57 -1.5 290,635 - DDA3937_RS01285 0.57 -0.1 290,699 + DDA3937_RS01285 0.66 -0.4 290,700 - DDA3937_RS01285 0.66 -0.8 290,796 - DDA3937_RS01285 0.78 -0.8 290,820 + DDA3937_RS01285 0.81 +0.6 290,820 + DDA3937_RS01285 0.81 +1.2 290,820 + DDA3937_RS01285 0.81 -0.7 290,820 + DDA3937_RS01285 0.81 -1.6 290,820 + DDA3937_RS01285 0.81 -1.6 290,821 - DDA3937_RS01285 0.82 +0.0 290,821 - DDA3937_RS01285 0.82 -0.4 290,826 + DDA3937_RS01285 0.82 -0.4 290,826 + DDA3937_RS01285 0.82 -1.5 290,826 + DDA3937_RS01285 0.82 -1.0 290,827 - DDA3937_RS01285 0.82 -0.4 290,827 - DDA3937_RS01285 0.82 -1.7 290,827 - DDA3937_RS01285 0.82 +0.4 290,827 - DDA3937_RS01285 0.82 -1.4 290,827 - DDA3937_RS01285 0.82 -1.1 290,827 - DDA3937_RS01285 0.82 -0.8 290,827 - DDA3937_RS01285 0.82 -1.1 290,827 - DDA3937_RS01285 0.82 -0.5 290,835 + DDA3937_RS01285 0.83 -1.8 290,835 + DDA3937_RS01285 0.83 -1.4 290,835 + DDA3937_RS01285 0.83 -0.6 290,835 + DDA3937_RS01285 0.83 +1.1 290,835 + DDA3937_RS01285 0.83 -0.4 290,835 + DDA3937_RS01285 0.83 -0.7 290,836 - DDA3937_RS01285 0.84 +0.2 290,836 - +1.2 290,836 - DDA3937_RS01285 0.84 -0.8 290,836 - DDA3937_RS01285 0.84 +1.1 290,836 - DDA3937_RS01285 0.84 -0.1 290,836 - DDA3937_RS01285 0.84 -0.4 290,836 - DDA3937_RS01285 0.84 -0.7 290,836 - DDA3937_RS01285 0.84 -0.1 290,836 - DDA3937_RS01285 0.84 -0.1 290,857 + DDA3937_RS01285 0.86 +0.3 290,858 - DDA3937_RS01285 0.86 -0.3 290,858 - DDA3937_RS01285 0.86 -1.2 290,939 + -0.4 290,939 + -0.8 290,939 + +0.8 290,939 + +0.7 290,939 + +0.8 290,940 - -1.6 290,940 - +0.1 290,940 - -0.1 290,940 - +0.7 290,940 - +0.3 290,940 - -0.1 290,940 - -0.6 290,965 + +0.1 290,965 + -0.8 290,965 + +0.8 290,965 + +2.6 290,965 + -0.2 290,965 + -0.1 290,966 - -0.5 290,966 - -1.3 290,966 - +0.2 290,966 - -1.3 290,979 + +0.2 290,979 + -0.0 290,980 - -0.4 290,985 + -0.7 290,996 + -0.2 290,996 + +0.3 290,997 - -0.4 290,997 - +0.1 291,018 + -0.5 291,019 - +0.4 291,044 + -0.2 291,044 + -1.3 291,045 - -0.1 291,049 - -1.1 291,049 - -0.9 291,061 + +0.1 291,061 + -0.4 291,061 + -0.6 291,061 + -2.0 291,061 + -0.4 291,061 + +0.4 291,061 + +1.6 291,061 + +0.0 291,062 - +0.2 291,062 - -0.2 291,062 - -0.6 291,062 - -1.2 291,062 - +0.3 291,062 - +0.0 291,062 - +1.1 291,062 - -1.0 291,062 - +0.6 291,062 - -2.5 291,062 - -0.9 291,062 - +0.0 291,063 + +0.4 291,063 + -0.5 291,063 + -0.5 291,063 + -0.6 291,064 - -0.8 291,064 - -1.0 291,071 - -0.5 291,071 - -0.3 291,071 - +0.0 291,076 + -0.4 291,076 + -0.0 291,076 + +0.5 291,077 - +0.4 291,077 - -0.2 291,077 - +0.1 291,077 - -0.8 291,077 - -1.2 291,078 + -0.2 291,078 + +1.0 291,079 - -0.9 291,079 - -0.1 291,079 - -0.9 291,092 - -0.5 291,139 + -1.6 291,140 - +0.4 291,140 - +1.2 291,140 - +0.5 291,141 + -0.5 291,141 + +0.2 291,141 + +1.0 291,141 + +0.7 291,141 + -1.2 291,142 - -0.6 291,142 - +0.7 291,142 - +1.6 291,142 - -1.0 291,142 - -0.0 291,142 - +1.3 291,142 - -0.4 291,142 - +0.5 291,142 - -0.4 291,142 - -1.1 291,142 - -0.2 291,149 + -1.3
Or see this region's nucleotide sequence