Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00900 and DDA3937_RS00905 are separated by 65 nucleotides DDA3937_RS00905 and DDA3937_RS00910 are separated by 158 nucleotides DDA3937_RS00910 and DDA3937_RS00915 are separated by 157 nucleotides
DDA3937_RS00900: DDA3937_RS00900 - cell division protein ZapB, at 207,918 to 208,160
_RS00900
DDA3937_RS00905: DDA3937_RS00905 - ribonuclease E activity regulator RraA, at 208,226 to 208,711
_RS00905
DDA3937_RS00910: DDA3937_RS00910 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 208,870 to 209,787
_RS00910
DDA3937_RS00915: DDA3937_RS00915 - HslU--HslV peptidase ATPase subunit, at 209,945 to 211,276
_RS00915
Position (kb) 208
209
210 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 207.911 kb on - strand at 207.917 kb on + strand at 207.918 kb on - strand at 207.918 kb on - strand at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.046 kb on + strand, within DDA3937_RS00900 at 208.046 kb on + strand, within DDA3937_RS00900 at 208.091 kb on - strand, within DDA3937_RS00900 at 208.091 kb on - strand at 208.091 kb on - strand, within DDA3937_RS00900 at 208.140 kb on - strand at 208.140 kb on - strand at 208.215 kb on + strand at 208.216 kb on - strand at 208.216 kb on - strand at 208.216 kb on - strand at 208.219 kb on + strand at 208.228 kb on - strand at 208.278 kb on + strand, within DDA3937_RS00905 at 208.278 kb on + strand, within DDA3937_RS00905 at 208.278 kb on + strand, within DDA3937_RS00905 at 208.279 kb on - strand, within DDA3937_RS00905 at 208.279 kb on - strand, within DDA3937_RS00905 at 208.434 kb on + strand, within DDA3937_RS00905 at 208.434 kb on + strand, within DDA3937_RS00905 at 208.435 kb on - strand, within DDA3937_RS00905 at 208.435 kb on - strand at 208.580 kb on - strand, within DDA3937_RS00905 at 208.580 kb on - strand, within DDA3937_RS00905 at 208.624 kb on + strand, within DDA3937_RS00905 at 208.624 kb on + strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.682 kb on - strand at 208.682 kb on - strand at 208.682 kb on - strand at 208.700 kb on - strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.705 kb on - strand at 208.705 kb on - strand at 208.711 kb on + strand at 208.712 kb on - strand at 208.712 kb on - strand at 208.712 kb on - strand at 208.717 kb on + strand at 208.718 kb on - strand at 208.718 kb on - strand at 208.718 kb on - strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.817 kb on + strand at 208.871 kb on + strand at 208.950 kb on + strand at 208.951 kb on - strand at 208.979 kb on + strand, within DDA3937_RS00910 at 208.980 kb on - strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.102 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.271 kb on - strand, within DDA3937_RS00910 at 209.273 kb on + strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.343 kb on - strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.361 kb on + strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.588 kb on + strand, within DDA3937_RS00910 at 209.589 kb on - strand, within DDA3937_RS00910 at 209.595 kb on + strand, within DDA3937_RS00910 at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.810 kb on + strand at 209.824 kb on - strand at 209.824 kb on - strand at 209.879 kb on + strand at 209.880 kb on - strand at 209.880 kb on - strand at 209.946 kb on + strand at 209.946 kb on + strand at 209.947 kb on - strand at 209.947 kb on - strand at 209.948 kb on + strand at 209.948 kb on + strand at 209.953 kb on + strand at 209.953 kb on + strand at 209.954 kb on - strand at 209.979 kb on - strand at 209.979 kb on - strand at 210.002 kb on + strand at 210.002 kb on + strand at 210.006 kb on + strand at 210.250 kb on + strand, within DDA3937_RS00915 at 210.250 kb on + strand, within DDA3937_RS00915 at 210.250 kb on + strand, within DDA3937_RS00915 at 210.413 kb on - strand, within DDA3937_RS00915 at 210.479 kb on - strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.732 kb on - strand, within DDA3937_RS00915
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 207,911 - -1.3 207,917 + -2.5 207,918 - -1.8 207,918 - -2.3 208,022 + DDA3937_RS00900 0.43 -0.6 208,022 + DDA3937_RS00900 0.43 -1.1 208,022 + DDA3937_RS00900 0.43 -2.8 208,022 + DDA3937_RS00900 0.43 -2.2 208,022 + DDA3937_RS00900 0.43 -1.8 208,022 + DDA3937_RS00900 0.43 -2.8 208,022 + DDA3937_RS00900 0.43 -1.3 208,023 - DDA3937_RS00900 0.43 +0.6 208,023 - DDA3937_RS00900 0.43 -0.6 208,023 - -1.3 208,023 - DDA3937_RS00900 0.43 -0.0 208,023 - DDA3937_RS00900 0.43 -1.1 208,023 - DDA3937_RS00900 0.43 -2.8 208,023 - DDA3937_RS00900 0.43 -0.8 208,046 + DDA3937_RS00900 0.53 -2.0 208,046 + DDA3937_RS00900 0.53 +0.2 208,091 - DDA3937_RS00900 0.71 -1.5 208,091 - +1.8 208,091 - DDA3937_RS00900 0.71 -0.5 208,140 - -1.1 208,140 - +1.6 208,215 + +1.2 208,216 - +0.2 208,216 - +0.2 208,216 - -0.8 208,219 + -1.9 208,228 - -0.3 208,278 + DDA3937_RS00905 0.11 -0.3 208,278 + DDA3937_RS00905 0.11 -0.5 208,278 + DDA3937_RS00905 0.11 +0.1 208,279 - DDA3937_RS00905 0.11 -0.2 208,279 - DDA3937_RS00905 0.11 -0.2 208,434 + DDA3937_RS00905 0.43 +0.5 208,434 + DDA3937_RS00905 0.43 +0.3 208,435 - DDA3937_RS00905 0.43 -1.2 208,435 - -0.3 208,580 - DDA3937_RS00905 0.73 +0.3 208,580 - DDA3937_RS00905 0.73 -0.6 208,624 + DDA3937_RS00905 0.82 +0.3 208,624 + DDA3937_RS00905 0.82 -0.1 208,625 - DDA3937_RS00905 0.82 -0.2 208,625 - DDA3937_RS00905 0.82 -0.2 208,625 - DDA3937_RS00905 0.82 +0.2 208,625 - DDA3937_RS00905 0.82 +0.5 208,677 + +0.2 208,677 + -0.1 208,677 + -0.0 208,677 + -1.0 208,677 + -0.3 208,677 + +0.6 208,677 + -0.2 208,678 - +0.1 208,678 - +0.2 208,678 - +0.2 208,678 - -0.6 208,681 + -0.2 208,681 + -0.4 208,681 + +0.1 208,681 + -1.1 208,682 - +1.2 208,682 - -1.0 208,682 - -2.7 208,700 - -0.8 208,704 + -0.7 208,704 + -1.1 208,704 + -1.1 208,704 + +1.9 208,705 - -2.3 208,705 - -0.4 208,711 + -0.6 208,712 - +0.6 208,712 - +0.2 208,712 - +1.4 208,717 + -0.7 208,718 - +0.2 208,718 - -0.1 208,718 - +1.1 208,751 + -0.3 208,751 + -0.3 208,751 + -1.6 208,751 + -0.7 208,751 + -0.2 208,751 + -0.6 208,751 + -0.1 208,751 + +1.0 208,752 - -0.3 208,752 - -0.8 208,752 - -1.8 208,752 - -0.4 208,752 - -1.0 208,752 - -1.8 208,752 - +0.7 208,752 - -0.9 208,752 - +0.1 208,817 + -0.6 208,871 + +5.0 208,950 + -1.6 208,951 - -2.7 208,979 + DDA3937_RS00910 0.12 -3.5 208,980 - DDA3937_RS00910 0.12 -3.2 209,037 + DDA3937_RS00910 0.18 -0.7 209,037 + DDA3937_RS00910 0.18 -1.5 209,037 + DDA3937_RS00910 0.18 -1.6 209,038 - DDA3937_RS00910 0.18 -0.8 209,038 - DDA3937_RS00910 0.18 -2.4 209,045 + DDA3937_RS00910 0.19 -2.2 209,045 + DDA3937_RS00910 0.19 -0.9 209,045 + DDA3937_RS00910 0.19 -0.8 209,092 + DDA3937_RS00910 0.24 -2.1 209,092 + DDA3937_RS00910 0.24 -0.8 209,092 + DDA3937_RS00910 0.24 -1.3 209,092 + DDA3937_RS00910 0.24 -1.1 209,093 - DDA3937_RS00910 0.24 -1.1 209,093 - DDA3937_RS00910 0.24 -2.0 209,093 - DDA3937_RS00910 0.24 -2.4 209,093 - DDA3937_RS00910 0.24 -3.3 209,102 + DDA3937_RS00910 0.25 -2.0 209,270 + DDA3937_RS00910 0.44 -0.4 209,270 + DDA3937_RS00910 0.44 -0.6 209,270 + DDA3937_RS00910 0.44 +0.6 209,270 + DDA3937_RS00910 0.44 -1.9 209,270 + DDA3937_RS00910 0.44 -2.5 209,271 - DDA3937_RS00910 0.44 -2.3 209,273 + DDA3937_RS00910 0.44 -2.2 209,274 - DDA3937_RS00910 0.44 -0.4 209,274 - DDA3937_RS00910 0.44 -1.2 209,336 + DDA3937_RS00910 0.51 -1.4 209,336 + DDA3937_RS00910 0.51 -0.6 209,336 + DDA3937_RS00910 0.51 -1.9 209,336 + DDA3937_RS00910 0.51 -1.7 209,336 + DDA3937_RS00910 0.51 -0.5 209,336 + DDA3937_RS00910 0.51 -1.4 209,337 - DDA3937_RS00910 0.51 -2.7 209,337 - DDA3937_RS00910 0.51 -3.0 209,337 - DDA3937_RS00910 0.51 -2.3 209,337 - DDA3937_RS00910 0.51 -1.9 209,337 - DDA3937_RS00910 0.51 -1.7 209,337 - DDA3937_RS00910 0.51 -1.0 209,337 - DDA3937_RS00910 0.51 -1.5 209,337 - DDA3937_RS00910 0.51 +0.2 209,343 - DDA3937_RS00910 0.52 -1.0 209,349 + DDA3937_RS00910 0.52 -1.6 209,349 + DDA3937_RS00910 0.52 -1.0 209,361 + DDA3937_RS00910 0.53 -2.6 209,362 - DDA3937_RS00910 0.54 -2.7 209,362 - DDA3937_RS00910 0.54 -0.5 209,363 + DDA3937_RS00910 0.54 -0.5 209,363 + DDA3937_RS00910 0.54 -1.0 209,363 + DDA3937_RS00910 0.54 -1.5 209,363 + DDA3937_RS00910 0.54 -0.2 209,363 + DDA3937_RS00910 0.54 -2.7 209,363 + DDA3937_RS00910 0.54 -1.9 209,364 - DDA3937_RS00910 0.54 -2.2 209,364 - DDA3937_RS00910 0.54 +1.7 209,364 - DDA3937_RS00910 0.54 -0.7 209,364 - DDA3937_RS00910 0.54 -1.6 209,364 - DDA3937_RS00910 0.54 -1.5 209,364 - DDA3937_RS00910 0.54 -1.1 209,364 - DDA3937_RS00910 0.54 -1.1 209,364 - -1.1 209,364 - DDA3937_RS00910 0.54 -3.5 209,364 - DDA3937_RS00910 0.54 -2.9 209,364 - DDA3937_RS00910 0.54 -2.4 209,367 + DDA3937_RS00910 0.54 -0.2 209,367 + DDA3937_RS00910 0.54 -0.1 209,367 + DDA3937_RS00910 0.54 -1.1 209,367 + DDA3937_RS00910 0.54 -0.6 209,368 - DDA3937_RS00910 0.54 -2.4 209,368 - DDA3937_RS00910 0.54 -3.9 209,368 - DDA3937_RS00910 0.54 -1.2 209,588 + DDA3937_RS00910 0.78 -1.8 209,589 - DDA3937_RS00910 0.78 -1.7 209,595 + DDA3937_RS00910 0.79 -2.5 209,769 + -3.4 209,769 + -1.7 209,769 + -1.3 209,769 + -2.6 209,769 + -0.5 209,769 + -0.1 209,769 + -3.1 209,769 + -2.5 209,770 - -3.7 209,770 - -1.8 209,770 - -0.3 209,770 - -2.2 209,770 - -2.2 209,770 - -1.1 209,770 - -1.6 209,770 - -1.8 209,770 - -1.7 209,810 + +1.2 209,824 - -1.2 209,824 - -0.8 209,879 + -1.2 209,880 - +0.2 209,880 - +1.2 209,946 + -0.3 209,946 + -0.9 209,947 - -0.6 209,947 - -1.4 209,948 + -0.3 209,948 + -0.4 209,953 + -1.5 209,953 + -1.0 209,954 - -0.6 209,979 - -0.4 209,979 - -1.1 210,002 + -1.1 210,002 + +0.4 210,006 + -0.4 210,250 + DDA3937_RS00915 0.23 +1.4 210,250 + DDA3937_RS00915 0.23 -1.3 210,250 + DDA3937_RS00915 0.23 -0.1 210,413 - DDA3937_RS00915 0.35 +1.6 210,479 - DDA3937_RS00915 0.40 -2.4 210,559 + DDA3937_RS00915 0.46 +0.2 210,559 + DDA3937_RS00915 0.46 -0.2 210,732 - DDA3937_RS00915 0.59 -0.3
Or see this region's nucleotide sequence