Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00895 and DDA3937_RS00900 are separated by 586 nucleotides DDA3937_RS00900 and DDA3937_RS00905 are separated by 65 nucleotides DDA3937_RS00905 and DDA3937_RS00910 are separated by 158 nucleotides
DDA3937_RS00895: DDA3937_RS00895 - aquaporin, at 206,480 to 207,331
_RS00895
DDA3937_RS00900: DDA3937_RS00900 - cell division protein ZapB, at 207,918 to 208,160
_RS00900
DDA3937_RS00905: DDA3937_RS00905 - ribonuclease E activity regulator RraA, at 208,226 to 208,711
_RS00905
DDA3937_RS00910: DDA3937_RS00910 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 208,870 to 209,787
_RS00910
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 207.003 kb on + strand, within DDA3937_RS00895 at 207.004 kb on - strand, within DDA3937_RS00895 at 207.013 kb on - strand, within DDA3937_RS00895 at 207.013 kb on - strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.060 kb on + strand, within DDA3937_RS00895 at 207.061 kb on - strand, within DDA3937_RS00895 at 207.061 kb on - strand, within DDA3937_RS00895 at 207.061 kb on - strand, within DDA3937_RS00895 at 207.061 kb on - strand, within DDA3937_RS00895 at 207.061 kb on - strand, within DDA3937_RS00895 at 207.065 kb on + strand, within DDA3937_RS00895 at 207.156 kb on + strand, within DDA3937_RS00895 at 207.156 kb on + strand, within DDA3937_RS00895 at 207.157 kb on - strand, within DDA3937_RS00895 at 207.157 kb on - strand, within DDA3937_RS00895 at 207.187 kb on + strand, within DDA3937_RS00895 at 207.187 kb on + strand, within DDA3937_RS00895 at 207.187 kb on + strand, within DDA3937_RS00895 at 207.187 kb on + strand, within DDA3937_RS00895 at 207.188 kb on - strand, within DDA3937_RS00895 at 207.188 kb on - strand, within DDA3937_RS00895 at 207.188 kb on - strand, within DDA3937_RS00895 at 207.188 kb on - strand, within DDA3937_RS00895 at 207.188 kb on - strand, within DDA3937_RS00895 at 207.304 kb on + strand at 207.332 kb on - strand at 207.348 kb on + strand at 207.348 kb on + strand at 207.348 kb on + strand at 207.349 kb on - strand at 207.349 kb on - strand at 207.349 kb on - strand at 207.350 kb on + strand at 207.350 kb on + strand at 207.350 kb on + strand at 207.350 kb on + strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.351 kb on - strand at 207.355 kb on + strand at 207.355 kb on + strand at 207.356 kb on - strand at 207.356 kb on - strand at 207.356 kb on - strand at 207.356 kb on - strand at 207.388 kb on + strand at 207.389 kb on - strand at 207.474 kb on + strand at 207.495 kb on - strand at 207.544 kb on + strand at 207.598 kb on + strand at 207.598 kb on + strand at 207.599 kb on - strand at 207.599 kb on - strand at 207.599 kb on - strand at 207.613 kb on + strand at 207.613 kb on + strand at 207.614 kb on - strand at 207.614 kb on - strand at 207.614 kb on - strand at 207.616 kb on + strand at 207.616 kb on + strand at 207.616 kb on + strand at 207.617 kb on - strand at 207.623 kb on + strand at 207.623 kb on + strand at 207.626 kb on + strand at 207.695 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.732 kb on + strand at 207.750 kb on + strand at 207.751 kb on - strand at 207.803 kb on + strand at 207.803 kb on + strand at 207.867 kb on + strand at 207.867 kb on + strand at 207.911 kb on - strand at 207.917 kb on + strand at 207.918 kb on - strand at 207.918 kb on - strand at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.022 kb on + strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.023 kb on - strand, within DDA3937_RS00900 at 208.046 kb on + strand, within DDA3937_RS00900 at 208.046 kb on + strand, within DDA3937_RS00900 at 208.091 kb on - strand, within DDA3937_RS00900 at 208.091 kb on - strand at 208.091 kb on - strand, within DDA3937_RS00900 at 208.140 kb on - strand at 208.140 kb on - strand at 208.215 kb on + strand at 208.216 kb on - strand at 208.216 kb on - strand at 208.216 kb on - strand at 208.219 kb on + strand at 208.228 kb on - strand at 208.278 kb on + strand, within DDA3937_RS00905 at 208.278 kb on + strand, within DDA3937_RS00905 at 208.278 kb on + strand, within DDA3937_RS00905 at 208.279 kb on - strand, within DDA3937_RS00905 at 208.279 kb on - strand, within DDA3937_RS00905 at 208.434 kb on + strand, within DDA3937_RS00905 at 208.434 kb on + strand, within DDA3937_RS00905 at 208.435 kb on - strand, within DDA3937_RS00905 at 208.435 kb on - strand at 208.580 kb on - strand, within DDA3937_RS00905 at 208.580 kb on - strand, within DDA3937_RS00905 at 208.624 kb on + strand, within DDA3937_RS00905 at 208.624 kb on + strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.625 kb on - strand, within DDA3937_RS00905 at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.677 kb on + strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.678 kb on - strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.681 kb on + strand at 208.682 kb on - strand at 208.682 kb on - strand at 208.682 kb on - strand at 208.700 kb on - strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.704 kb on + strand at 208.705 kb on - strand at 208.705 kb on - strand at 208.711 kb on + strand at 208.712 kb on - strand at 208.712 kb on - strand at 208.712 kb on - strand at 208.717 kb on + strand at 208.718 kb on - strand at 208.718 kb on - strand at 208.718 kb on - strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.751 kb on + strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.752 kb on - strand at 208.817 kb on + strand at 208.871 kb on + strand at 208.950 kb on + strand at 208.951 kb on - strand at 208.979 kb on + strand, within DDA3937_RS00910 at 208.980 kb on - strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.102 kb on + strand, within DDA3937_RS00910
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 207,003 + DDA3937_RS00895 0.61 -0.6 207,004 - DDA3937_RS00895 0.62 +0.2 207,013 - DDA3937_RS00895 0.63 +0.6 207,013 - DDA3937_RS00895 0.63 -0.0 207,060 + DDA3937_RS00895 0.68 -0.1 207,060 + DDA3937_RS00895 0.68 -0.7 207,060 + DDA3937_RS00895 0.68 +0.6 207,060 + DDA3937_RS00895 0.68 -0.1 207,060 + DDA3937_RS00895 0.68 -1.1 207,060 + DDA3937_RS00895 0.68 -0.9 207,060 + DDA3937_RS00895 0.68 +1.0 207,060 + DDA3937_RS00895 0.68 +0.9 207,060 + DDA3937_RS00895 0.68 +0.2 207,060 + DDA3937_RS00895 0.68 -0.4 207,060 + DDA3937_RS00895 0.68 +0.4 207,060 + DDA3937_RS00895 0.68 +1.1 207,060 + DDA3937_RS00895 0.68 +0.1 207,061 - DDA3937_RS00895 0.68 +0.9 207,061 - DDA3937_RS00895 0.68 -0.5 207,061 - DDA3937_RS00895 0.68 +0.5 207,061 - DDA3937_RS00895 0.68 -1.8 207,061 - DDA3937_RS00895 0.68 -0.0 207,065 + DDA3937_RS00895 0.69 -1.3 207,156 + DDA3937_RS00895 0.79 -0.8 207,156 + DDA3937_RS00895 0.79 -1.1 207,157 - DDA3937_RS00895 0.79 +0.9 207,157 - DDA3937_RS00895 0.79 -0.2 207,187 + DDA3937_RS00895 0.83 +0.1 207,187 + DDA3937_RS00895 0.83 -0.1 207,187 + DDA3937_RS00895 0.83 +0.2 207,187 + DDA3937_RS00895 0.83 +0.7 207,188 - DDA3937_RS00895 0.83 -1.1 207,188 - DDA3937_RS00895 0.83 +0.3 207,188 - DDA3937_RS00895 0.83 +0.1 207,188 - DDA3937_RS00895 0.83 +0.7 207,188 - DDA3937_RS00895 0.83 -1.2 207,304 + +0.5 207,332 - -0.7 207,348 + -0.8 207,348 + +0.8 207,348 + +0.0 207,349 - +1.6 207,349 - +1.0 207,349 - -2.1 207,350 + +1.3 207,350 + +0.9 207,350 + -0.1 207,350 + +1.1 207,351 - -0.7 207,351 - -1.9 207,351 - -0.2 207,351 - -0.3 207,351 - -0.5 207,355 + +0.2 207,355 + -0.3 207,356 - -0.3 207,356 - -0.3 207,356 - -0.5 207,356 - -0.2 207,388 + +0.1 207,389 - -0.2 207,474 + -0.0 207,495 - -0.9 207,544 + +0.7 207,598 + -1.3 207,598 + -0.5 207,599 - -0.7 207,599 - +1.9 207,599 - +0.1 207,613 + -1.2 207,613 + +0.1 207,614 - -0.8 207,614 - -0.3 207,614 - -0.4 207,616 + +0.3 207,616 + +0.9 207,616 + +0.2 207,617 - +0.3 207,623 + -0.5 207,623 + -0.3 207,626 + +1.2 207,695 + -0.3 207,732 + -0.3 207,732 + +0.9 207,732 + -1.6 207,732 + -0.7 207,732 + -0.8 207,732 + -0.5 207,732 + +1.0 207,750 + +0.0 207,751 - -1.1 207,803 + -0.8 207,803 + -1.4 207,867 + -0.1 207,867 + -0.4 207,911 - -1.3 207,917 + -2.5 207,918 - -1.8 207,918 - -2.3 208,022 + DDA3937_RS00900 0.43 -0.6 208,022 + DDA3937_RS00900 0.43 -1.1 208,022 + DDA3937_RS00900 0.43 -2.8 208,022 + DDA3937_RS00900 0.43 -2.2 208,022 + DDA3937_RS00900 0.43 -1.8 208,022 + DDA3937_RS00900 0.43 -2.8 208,022 + DDA3937_RS00900 0.43 -1.3 208,023 - DDA3937_RS00900 0.43 +0.6 208,023 - DDA3937_RS00900 0.43 -0.6 208,023 - -1.3 208,023 - DDA3937_RS00900 0.43 -0.0 208,023 - DDA3937_RS00900 0.43 -1.1 208,023 - DDA3937_RS00900 0.43 -2.8 208,023 - DDA3937_RS00900 0.43 -0.8 208,046 + DDA3937_RS00900 0.53 -2.0 208,046 + DDA3937_RS00900 0.53 +0.2 208,091 - DDA3937_RS00900 0.71 -1.5 208,091 - +1.8 208,091 - DDA3937_RS00900 0.71 -0.5 208,140 - -1.1 208,140 - +1.6 208,215 + +1.2 208,216 - +0.2 208,216 - +0.2 208,216 - -0.8 208,219 + -1.9 208,228 - -0.3 208,278 + DDA3937_RS00905 0.11 -0.3 208,278 + DDA3937_RS00905 0.11 -0.5 208,278 + DDA3937_RS00905 0.11 +0.1 208,279 - DDA3937_RS00905 0.11 -0.2 208,279 - DDA3937_RS00905 0.11 -0.2 208,434 + DDA3937_RS00905 0.43 +0.5 208,434 + DDA3937_RS00905 0.43 +0.3 208,435 - DDA3937_RS00905 0.43 -1.2 208,435 - -0.3 208,580 - DDA3937_RS00905 0.73 +0.3 208,580 - DDA3937_RS00905 0.73 -0.6 208,624 + DDA3937_RS00905 0.82 +0.3 208,624 + DDA3937_RS00905 0.82 -0.1 208,625 - DDA3937_RS00905 0.82 -0.2 208,625 - DDA3937_RS00905 0.82 -0.2 208,625 - DDA3937_RS00905 0.82 +0.2 208,625 - DDA3937_RS00905 0.82 +0.5 208,677 + +0.2 208,677 + -0.1 208,677 + -0.0 208,677 + -1.0 208,677 + -0.3 208,677 + +0.6 208,677 + -0.2 208,678 - +0.1 208,678 - +0.2 208,678 - +0.2 208,678 - -0.6 208,681 + -0.2 208,681 + -0.4 208,681 + +0.1 208,681 + -1.1 208,682 - +1.2 208,682 - -1.0 208,682 - -2.7 208,700 - -0.8 208,704 + -0.7 208,704 + -1.1 208,704 + -1.1 208,704 + +1.9 208,705 - -2.3 208,705 - -0.4 208,711 + -0.6 208,712 - +0.6 208,712 - +0.2 208,712 - +1.4 208,717 + -0.7 208,718 - +0.2 208,718 - -0.1 208,718 - +1.1 208,751 + -0.3 208,751 + -0.3 208,751 + -1.6 208,751 + -0.7 208,751 + -0.2 208,751 + -0.6 208,751 + -0.1 208,751 + +1.0 208,752 - -0.3 208,752 - -0.8 208,752 - -1.8 208,752 - -0.4 208,752 - -1.0 208,752 - -1.8 208,752 - +0.7 208,752 - -0.9 208,752 - +0.1 208,817 + -0.6 208,871 + +5.0 208,950 + -1.6 208,951 - -2.7 208,979 + DDA3937_RS00910 0.12 -3.5 208,980 - DDA3937_RS00910 0.12 -3.2 209,037 + DDA3937_RS00910 0.18 -0.7 209,037 + DDA3937_RS00910 0.18 -1.5 209,037 + DDA3937_RS00910 0.18 -1.6 209,038 - DDA3937_RS00910 0.18 -0.8 209,038 - DDA3937_RS00910 0.18 -2.4 209,045 + DDA3937_RS00910 0.19 -2.2 209,045 + DDA3937_RS00910 0.19 -0.9 209,045 + DDA3937_RS00910 0.19 -0.8 209,092 + DDA3937_RS00910 0.24 -2.1 209,092 + DDA3937_RS00910 0.24 -0.8 209,092 + DDA3937_RS00910 0.24 -1.3 209,092 + DDA3937_RS00910 0.24 -1.1 209,093 - DDA3937_RS00910 0.24 -1.1 209,093 - DDA3937_RS00910 0.24 -2.0 209,093 - DDA3937_RS00910 0.24 -2.4 209,093 - DDA3937_RS00910 0.24 -3.3 209,102 + DDA3937_RS00910 0.25 -2.0
Or see this region's nucleotide sequence