Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00750 and DDA3937_RS00755 are separated by 169 nucleotides DDA3937_RS00755 and DDA3937_RS00760 are separated by 54 nucleotides DDA3937_RS00760 and DDA3937_RS00765 are separated by 35 nucleotides DDA3937_RS00765 and DDA3937_RS00770 overlap by 31 nucleotides
DDA3937_RS00750: DDA3937_RS00750 - DUF2756 domain-containing protein, at 177,370 to 177,654
_RS00750
DDA3937_RS00755: DDA3937_RS00755 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 177,824 to 178,288
_RS00755
DDA3937_RS00760: DDA3937_RS00760 - hypothetical protein, at 178,343 to 178,933
_RS00760
DDA3937_RS00765: DDA3937_RS00765 - DUF3142 domain-containing protein, at 178,969 to 179,742
_RS00765
DDA3937_RS00770: DDA3937_RS00770 - hypothetical protein, at 179,712 to 181,913
_RS00770
Position (kb) 178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 177.367 kb on - strand at 177.374 kb on + strand at 177.443 kb on - strand at 177.484 kb on - strand, within DDA3937_RS00750 at 177.583 kb on + strand, within DDA3937_RS00750 at 177.611 kb on - strand, within DDA3937_RS00750 at 177.644 kb on - strand at 177.646 kb on + strand at 177.646 kb on + strand at 177.646 kb on + strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.691 kb on - strand at 177.691 kb on - strand at 177.783 kb on - strand at 177.783 kb on - strand at 177.788 kb on - strand at 177.788 kb on - strand at 177.789 kb on + strand at 177.790 kb on - strand at 177.820 kb on + strand at 177.820 kb on + strand at 177.832 kb on + strand at 177.842 kb on + strand at 177.843 kb on - strand at 177.843 kb on - strand at 177.874 kb on + strand, within DDA3937_RS00755 at 177.875 kb on - strand, within DDA3937_RS00755 at 177.875 kb on - strand, within DDA3937_RS00755 at 177.877 kb on + strand, within DDA3937_RS00755 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.079 kb on + strand, within DDA3937_RS00755 at 178.094 kb on + strand, within DDA3937_RS00755 at 178.150 kb on + strand at 178.151 kb on - strand, within DDA3937_RS00755 at 178.247 kb on + strand at 178.493 kb on + strand, within DDA3937_RS00760 at 178.660 kb on + strand, within DDA3937_RS00760 at 178.661 kb on - strand, within DDA3937_RS00760 at 178.661 kb on - strand, within DDA3937_RS00760 at 178.661 kb on - strand, within DDA3937_RS00760 at 178.872 kb on + strand, within DDA3937_RS00760 at 178.872 kb on + strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.873 kb on - strand, within DDA3937_RS00760 at 178.906 kb on + strand at 178.907 kb on - strand at 178.970 kb on + strand at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.085 kb on + strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.086 kb on - strand, within DDA3937_RS00765 at 179.145 kb on - strand, within DDA3937_RS00765 at 179.166 kb on + strand, within DDA3937_RS00765 at 179.166 kb on + strand, within DDA3937_RS00765 at 179.167 kb on - strand, within DDA3937_RS00765 at 179.167 kb on - strand, within DDA3937_RS00765 at 179.180 kb on + strand, within DDA3937_RS00765 at 179.180 kb on + strand, within DDA3937_RS00765 at 179.180 kb on + strand, within DDA3937_RS00765 at 179.181 kb on - strand, within DDA3937_RS00765 at 179.207 kb on - strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.327 kb on + strand, within DDA3937_RS00765 at 179.328 kb on - strand, within DDA3937_RS00765 at 179.343 kb on - strand, within DDA3937_RS00765 at 179.343 kb on - strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.410 kb on + strand, within DDA3937_RS00765 at 179.411 kb on - strand, within DDA3937_RS00765 at 179.411 kb on - strand, within DDA3937_RS00765 at 179.411 kb on - strand, within DDA3937_RS00765 at 179.428 kb on + strand, within DDA3937_RS00765 at 179.429 kb on - strand, within DDA3937_RS00765 at 179.567 kb on + strand, within DDA3937_RS00765 at 179.568 kb on - strand, within DDA3937_RS00765 at 179.568 kb on - strand, within DDA3937_RS00765 at 179.587 kb on + strand, within DDA3937_RS00765 at 179.587 kb on + strand at 179.588 kb on - strand, within DDA3937_RS00765 at 179.695 kb on + strand at 179.695 kb on + strand at 179.696 kb on - strand at 179.696 kb on - strand at 179.703 kb on + strand at 179.703 kb on + strand at 179.704 kb on - strand at 179.704 kb on - strand at 179.713 kb on + strand at 179.713 kb on + strand at 179.714 kb on - strand at 179.719 kb on + strand at 179.719 kb on + strand at 179.720 kb on - strand at 179.720 kb on - strand at 179.722 kb on + strand at 179.722 kb on + strand at 179.722 kb on + strand at 179.722 kb on + strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.723 kb on - strand at 179.753 kb on + strand at 179.753 kb on + strand at 179.804 kb on + strand at 179.827 kb on + strand at 179.828 kb on - strand at 179.828 kb on - strand at 179.828 kb on - strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.848 kb on + strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.849 kb on - strand at 179.869 kb on + strand at 179.917 kb on + strand at 179.917 kb on + strand at 179.917 kb on + strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand at 179.918 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 177,367 - -0.4 177,374 + -0.2 177,443 - +2.3 177,484 - DDA3937_RS00750 0.40 -0.8 177,583 + DDA3937_RS00750 0.75 -0.8 177,611 - DDA3937_RS00750 0.85 +0.4 177,644 - +0.3 177,646 + +0.3 177,646 + +0.3 177,646 + -1.6 177,647 - -0.4 177,647 - -0.4 177,647 - +1.8 177,647 - -1.1 177,691 - +0.2 177,691 - -0.4 177,783 - -0.2 177,783 - -0.6 177,788 - -0.3 177,788 - +0.1 177,789 + -1.5 177,790 - -0.5 177,820 + -0.4 177,820 + +0.1 177,832 + -2.1 177,842 + -0.5 177,843 - +0.3 177,843 - +0.0 177,874 + DDA3937_RS00755 0.11 -1.8 177,875 - DDA3937_RS00755 0.11 +0.9 177,875 - DDA3937_RS00755 0.11 +1.3 177,877 + DDA3937_RS00755 0.11 +1.3 178,010 + DDA3937_RS00755 0.40 -2.3 178,010 + DDA3937_RS00755 0.40 +1.0 178,011 - DDA3937_RS00755 0.40 -0.1 178,011 - DDA3937_RS00755 0.40 +0.1 178,079 + DDA3937_RS00755 0.55 -0.2 178,094 + DDA3937_RS00755 0.58 -0.4 178,150 + +0.3 178,151 - DDA3937_RS00755 0.70 -0.2 178,247 + -1.3 178,493 + DDA3937_RS00760 0.25 -0.8 178,660 + DDA3937_RS00760 0.54 -0.1 178,661 - DDA3937_RS00760 0.54 +0.2 178,661 - DDA3937_RS00760 0.54 -1.9 178,661 - DDA3937_RS00760 0.54 -2.1 178,872 + DDA3937_RS00760 0.90 -0.5 178,872 + DDA3937_RS00760 0.90 -2.3 178,873 - DDA3937_RS00760 0.90 -0.6 178,873 - DDA3937_RS00760 0.90 -0.0 178,873 - DDA3937_RS00760 0.90 -0.3 178,873 - DDA3937_RS00760 0.90 -1.1 178,873 - DDA3937_RS00760 0.90 +0.0 178,906 + +0.8 178,907 - -0.4 178,970 + +0.6 179,085 + DDA3937_RS00765 0.15 +3.0 179,085 + DDA3937_RS00765 0.15 -0.3 179,085 + DDA3937_RS00765 0.15 -0.0 179,085 + DDA3937_RS00765 0.15 -0.0 179,085 + DDA3937_RS00765 0.15 +1.2 179,086 - DDA3937_RS00765 0.15 -1.6 179,086 - DDA3937_RS00765 0.15 -1.8 179,086 - DDA3937_RS00765 0.15 -0.8 179,086 - DDA3937_RS00765 0.15 -0.6 179,145 - DDA3937_RS00765 0.23 -0.1 179,166 + DDA3937_RS00765 0.25 +0.2 179,166 + DDA3937_RS00765 0.25 -0.6 179,167 - DDA3937_RS00765 0.26 +2.4 179,167 - DDA3937_RS00765 0.26 +0.0 179,180 + DDA3937_RS00765 0.27 +0.5 179,180 + DDA3937_RS00765 0.27 -0.5 179,180 + DDA3937_RS00765 0.27 -1.1 179,181 - DDA3937_RS00765 0.27 -1.1 179,207 - DDA3937_RS00765 0.31 +0.1 179,327 + DDA3937_RS00765 0.46 +0.7 179,327 + DDA3937_RS00765 0.46 -0.3 179,327 + DDA3937_RS00765 0.46 +1.8 179,327 + DDA3937_RS00765 0.46 -0.7 179,327 + DDA3937_RS00765 0.46 -1.7 179,327 + DDA3937_RS00765 0.46 -1.2 179,328 - DDA3937_RS00765 0.46 -0.3 179,343 - DDA3937_RS00765 0.48 +0.7 179,343 - DDA3937_RS00765 0.48 -1.2 179,410 + DDA3937_RS00765 0.57 -0.7 179,410 + DDA3937_RS00765 0.57 -0.1 179,410 + DDA3937_RS00765 0.57 -1.6 179,410 + DDA3937_RS00765 0.57 -0.1 179,410 + DDA3937_RS00765 0.57 -1.3 179,411 - DDA3937_RS00765 0.57 -0.7 179,411 - DDA3937_RS00765 0.57 -0.9 179,411 - DDA3937_RS00765 0.57 -1.2 179,428 + DDA3937_RS00765 0.59 +1.2 179,429 - DDA3937_RS00765 0.59 -0.3 179,567 + DDA3937_RS00765 0.77 -0.3 179,568 - DDA3937_RS00765 0.77 -0.2 179,568 - DDA3937_RS00765 0.77 -0.1 179,587 + DDA3937_RS00765 0.80 +0.1 179,587 + +0.2 179,588 - DDA3937_RS00765 0.80 +0.9 179,695 + +0.1 179,695 + +0.2 179,696 - -0.8 179,696 - -0.8 179,703 + -0.1 179,703 + -0.0 179,704 - +0.7 179,704 - -0.2 179,713 + -0.4 179,713 + -0.6 179,714 - -2.5 179,719 + -1.0 179,719 + +0.7 179,720 - -0.5 179,720 - +1.7 179,722 + -1.8 179,722 + +0.1 179,722 + +0.9 179,722 + -0.3 179,723 - -0.6 179,723 - -1.4 179,723 - +0.2 179,723 - -0.0 179,723 - -1.1 179,753 + -0.3 179,753 + +0.2 179,804 + -0.4 179,827 + -0.9 179,828 - -1.3 179,828 - -0.1 179,828 - -0.3 179,848 + -0.4 179,848 + -1.6 179,848 + -0.9 179,848 + -0.3 179,848 + +0.9 179,848 + -0.1 179,848 + +0.1 179,848 + +0.4 179,849 - -0.7 179,849 - -0.3 179,849 - -1.1 179,849 - +0.2 179,849 - +0.4 179,849 - +0.8 179,869 + +0.2 179,917 + -0.0 179,917 + -0.2 179,917 + -0.2 179,918 - -2.7 179,918 - -0.3 179,918 - -0.3 179,918 - -1.3 179,918 - -0.6 179,918 - -0.6 179,918 - +0.5 179,918 - +1.4 179,918 - -0.3 179,918 - -0.4
Or see this region's nucleotide sequence