Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00635 and DDA3937_RS00640 are separated by 5 nucleotides DDA3937_RS00640 and DDA3937_RS00645 overlap by 11 nucleotides DDA3937_RS00645 and DDA3937_RS00650 are separated by 360 nucleotides
DDA3937_RS00635: DDA3937_RS00635 - signal recognition particle-docking protein FtsY, at 146,929 to 148,269
_RS00635
DDA3937_RS00640: DDA3937_RS00640 - cell division ATP-binding protein FtsE, at 148,275 to 148,943
_RS00640
DDA3937_RS00645: DDA3937_RS00645 - cell division protein FtsX, at 148,933 to 149,904
_RS00645
DDA3937_RS00650: DDA3937_RS00650 - RNA polymerase sigma factor RpoH, at 150,265 to 151,122
_RS00650
Position (kb) 148
149
150 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 148.267 kb on + strand at 148.267 kb on + strand at 148.268 kb on - strand at 148.268 kb on - strand at 148.400 kb on + strand, within DDA3937_RS00640 at 148.469 kb on + strand, within DDA3937_RS00640 at 148.564 kb on - strand, within DDA3937_RS00640 at 148.854 kb on - strand, within DDA3937_RS00640 at 148.941 kb on + strand at 148.942 kb on - strand at 149.018 kb on - strand at 149.018 kb on - strand at 149.043 kb on + strand, within DDA3937_RS00645 at 149.119 kb on + strand, within DDA3937_RS00645 at 149.185 kb on + strand, within DDA3937_RS00645 at 149.186 kb on - strand, within DDA3937_RS00645 at 149.186 kb on - strand, within DDA3937_RS00645 at 149.186 kb on - strand, within DDA3937_RS00645 at 149.269 kb on + strand, within DDA3937_RS00645 at 149.269 kb on + strand, within DDA3937_RS00645 at 149.270 kb on - strand, within DDA3937_RS00645 at 149.270 kb on - strand, within DDA3937_RS00645 at 149.270 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.516 kb on + strand, within DDA3937_RS00645 at 149.516 kb on + strand, within DDA3937_RS00645 at 149.517 kb on - strand, within DDA3937_RS00645 at 149.533 kb on - strand, within DDA3937_RS00645 at 149.553 kb on - strand, within DDA3937_RS00645 at 149.778 kb on + strand, within DDA3937_RS00645 at 149.778 kb on + strand, within DDA3937_RS00645 at 149.778 kb on + strand, within DDA3937_RS00645 at 149.779 kb on - strand, within DDA3937_RS00645 at 149.779 kb on - strand, within DDA3937_RS00645 at 149.784 kb on + strand, within DDA3937_RS00645 at 149.785 kb on - strand, within DDA3937_RS00645 at 149.785 kb on - strand, within DDA3937_RS00645 at 149.874 kb on - strand at 149.882 kb on + strand at 149.882 kb on + strand at 149.902 kb on + strand at 149.909 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.980 kb on + strand at 149.981 kb on - strand at 150.058 kb on - strand at 150.062 kb on + strand at 150.062 kb on + strand at 150.062 kb on + strand at 150.062 kb on + strand at 150.063 kb on - strand at 150.072 kb on - strand at 150.105 kb on + strand at 150.115 kb on + strand at 150.116 kb on - strand at 150.116 kb on - strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.175 kb on - strand at 150.175 kb on - strand at 150.175 kb on - strand at 150.175 kb on - strand at 150.186 kb on + strand at 150.208 kb on + strand at 150.208 kb on + strand at 150.208 kb on + strand at 150.209 kb on - strand at 150.239 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.276 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 148,267 + -1.1 148,267 + -0.1 148,268 - -3.0 148,268 - -0.8 148,400 + DDA3937_RS00640 0.19 -1.6 148,469 + DDA3937_RS00640 0.29 +0.7 148,564 - DDA3937_RS00640 0.43 -1.5 148,854 - DDA3937_RS00640 0.87 -0.4 148,941 + -1.8 148,942 - -1.9 149,018 - -2.1 149,018 - -2.3 149,043 + DDA3937_RS00645 0.11 +0.8 149,119 + DDA3937_RS00645 0.19 -0.4 149,185 + DDA3937_RS00645 0.26 -0.9 149,186 - DDA3937_RS00645 0.26 +0.1 149,186 - DDA3937_RS00645 0.26 -1.8 149,186 - DDA3937_RS00645 0.26 -1.2 149,269 + DDA3937_RS00645 0.35 -2.6 149,269 + DDA3937_RS00645 0.35 +1.2 149,270 - DDA3937_RS00645 0.35 -2.3 149,270 - DDA3937_RS00645 0.35 -1.4 149,270 - DDA3937_RS00645 0.35 -1.6 149,413 - DDA3937_RS00645 0.49 -0.9 149,413 - DDA3937_RS00645 0.49 -0.1 149,413 - DDA3937_RS00645 0.49 -2.3 149,413 - DDA3937_RS00645 0.49 -1.9 149,516 + DDA3937_RS00645 0.60 -1.2 149,516 + DDA3937_RS00645 0.60 -1.6 149,517 - DDA3937_RS00645 0.60 +0.8 149,533 - DDA3937_RS00645 0.62 -1.0 149,553 - DDA3937_RS00645 0.64 -1.4 149,778 + DDA3937_RS00645 0.87 -2.0 149,778 + DDA3937_RS00645 0.87 -1.0 149,778 + DDA3937_RS00645 0.87 -0.3 149,779 - DDA3937_RS00645 0.87 -4.3 149,779 - DDA3937_RS00645 0.87 -0.9 149,784 + DDA3937_RS00645 0.88 -1.0 149,785 - DDA3937_RS00645 0.88 -2.2 149,785 - DDA3937_RS00645 0.88 -0.8 149,874 - +0.0 149,882 + -0.2 149,882 + -0.9 149,902 + -0.7 149,909 + -1.5 149,940 + +0.6 149,940 + -0.6 149,940 + -0.5 149,980 + -0.0 149,981 - +0.7 150,058 - +0.6 150,062 + -0.2 150,062 + -0.3 150,062 + -0.3 150,062 + -0.4 150,063 - -0.7 150,072 - -1.1 150,105 + +1.0 150,115 + -0.8 150,116 - +0.8 150,116 - +0.0 150,153 + +0.1 150,153 + -0.7 150,153 + +1.2 150,153 + -0.2 150,153 + +0.9 150,153 + -1.3 150,153 + +0.1 150,153 + +0.2 150,153 + -2.1 150,153 + +0.0 150,153 + -0.6 150,153 + +0.1 150,174 + +0.0 150,174 + -1.1 150,174 + -0.4 150,174 + -1.1 150,174 + -0.6 150,174 + -0.5 150,174 + +0.4 150,174 + -0.3 150,174 + -0.5 150,174 + -0.3 150,174 + -0.5 150,174 + -0.0 150,174 + -1.8 150,175 - -0.8 150,175 - -0.8 150,175 - -1.3 150,175 - +0.2 150,186 + -0.8 150,208 + +0.9 150,208 + -1.1 150,208 + -1.1 150,209 - -1.5 150,239 + -1.3 150,250 + -0.7 150,250 + -1.2 150,250 + +0.7 150,250 + -1.5 150,250 + +0.0 150,250 + +0.2 150,250 + -0.2 150,276 + -0.8
Or see this region's nucleotide sequence