Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00345

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
78,878	-		DDA3937_RS00340	0.43	-0.5
78,976	+		DDA3937_RS00340	0.51	-0.3
79,345	+		DDA3937_RS00340	0.82	-0.7
79,346	-		DDA3937_RS00340	0.82	-1.3
79,371	+		DDA3937_RS00340	0.84	-1.2
79,371	+		DDA3937_RS00340	0.84	-1.5
79,371	+		DDA3937_RS00340	0.84	-0.3
79,371	+		DDA3937_RS00340	0.84	+3.5
79,371	+		DDA3937_RS00340	0.84	-0.5
79,371	+		DDA3937_RS00340	0.84	+0.1
79,372	-		DDA3937_RS00340	0.84	+0.8
79,372	-		DDA3937_RS00340	0.84	-3.2
79,538	+				-0.3
79,538	+				-1.8
79,538	+				+0.1
79,538	+				-0.9
79,538	+				+0.1
79,539	-				+0.1
79,539	-				+0.6
79,539	-				-2.2
79,558	+				-0.3
79,558	+				-1.0
79,558	+				+0.4
79,558	+				-0.0
79,558	+				+1.1
79,558	+				+1.2
79,558	+				-1.0
79,559	-				+1.2
79,605	+				-0.6
79,608	-				+1.2
79,768	+				+0.1
79,769	-				-0.8
79,778	+				+0.5
79,778	+				+0.7
79,778	+				-1.1
79,778	+				-0.1
79,779	-				+0.9
79,779	-				-0.2
79,787	-				+0.2
79,787	-				-1.3
79,787	-				-2.1
79,787	-				-1.6
79,787	-				-1.8
79,842	+				+1.2
79,843	-				-0.2
79,843	-				-2.8
79,858	+				-0.3
79,858	+				-0.1
79,858	+				+0.2
79,859	-				-0.6
79,859	-				-1.8
79,863	+				-2.1
79,863	+				-0.7
79,864	-				-0.6
79,870	-				+3.8
79,870	-				-0.9
79,870	-				-0.8
79,870	-				-2.7
79,934	+				-1.9
79,935	-				-1.8
79,935	-				-1.1
79,935	-				-0.3
79,935	-				-2.0
79,935	-				-0.6
79,988	+				-0.8
79,988	+				-2.1
79,989	-				-0.3
79,989	-				-0.6
79,989	-				+1.2
79,989	-				+0.8
79,989	-				-2.1
80,023	+		DDA3937_RS00345	0.11	-0.8
80,023	+		DDA3937_RS00345	0.11	-0.6
80,122	+				-1.3
80,123	-		DDA3937_RS00345	0.17	-2.2
80,173	+		DDA3937_RS00345	0.21	-2.1
80,195	+		DDA3937_RS00345	0.22	-1.0
80,196	-		DDA3937_RS00345	0.22	-0.6
80,278	+		DDA3937_RS00345	0.28	+0.7
80,302	+		DDA3937_RS00345	0.29	-1.6
80,320	+				-0.3
80,320	+		DDA3937_RS00345	0.31	+1.6
80,381	+		DDA3937_RS00345	0.35	-0.8
80,381	+		DDA3937_RS00345	0.35	-0.6
80,382	-		DDA3937_RS00345	0.35	-1.5
80,382	-		DDA3937_RS00345	0.35	-1.3
80,408	-		DDA3937_RS00345	0.36	-1.8
80,410	+		DDA3937_RS00345	0.37	-2.7
80,410	+		DDA3937_RS00345	0.37	-1.6
80,410	+		DDA3937_RS00345	0.37	-1.9
80,410	+		DDA3937_RS00345	0.37	-1.5
80,465	-		DDA3937_RS00345	0.40	-0.3
80,515	-		DDA3937_RS00345	0.43	-0.6
80,606	-		DDA3937_RS00345	0.50	-1.3
80,606	-		DDA3937_RS00345	0.50	-2.1
80,675	+		DDA3937_RS00345	0.54	-0.4
80,676	-		DDA3937_RS00345	0.54	-1.6
80,676	-		DDA3937_RS00345	0.54	-0.0
80,791	+		DDA3937_RS00345	0.62	-1.7
80,792	-		DDA3937_RS00345	0.62	+0.4
80,839	+		DDA3937_RS00345	0.65	-1.3
80,997	-		DDA3937_RS00345	0.75	-1.1
81,061	+		DDA3937_RS00345	0.80	-0.2
81,061	+		DDA3937_RS00345	0.80	-1.6
81,062	-		DDA3937_RS00345	0.80	+1.8
81,125	+		DDA3937_RS00345	0.84	+1.2
81,182	+		DDA3937_RS00345	0.88	-0.8
81,182	+		DDA3937_RS00345	0.88	-0.3
81,182	+		DDA3937_RS00345	0.88	-1.3
81,183	-		DDA3937_RS00345	0.88	-1.6
81,183	-		DDA3937_RS00345	0.88	-0.1
81,183	-		DDA3937_RS00345	0.88	-1.9
81,203	-		DDA3937_RS00345	0.89	-1.6
81,213	+		DDA3937_RS00345	0.90	-0.9
81,214	-		DDA3937_RS00345	0.90	-0.8
81,214	-		DDA3937_RS00345	0.90	-0.9
81,342	-				-1.2
81,381	+				+0.1
81,381	+				-1.4
81,382	-				+0.2
81,398	+				-0.1
81,413	+				-0.3
81,433	+				-0.8
81,433	+				-1.5
81,433	+				+0.2
81,433	+				-0.2
81,434	-				+0.0
81,434	-				-0.9
81,438	+				+0.7
81,438	+				-0.1
81,439	-				-0.6
81,439	-				+2.0
81,439	-				+1.2
81,439	-				-1.2
81,439	-				+1.4
81,439	-				-0.5
81,440	+				+0.5
81,440	+				+0.8
81,440	+				-0.5
81,441	-				+0.5
81,456	+				+1.0
81,457	-				-0.2
81,457	-				+0.4
81,474	-				-1.1
81,623	+		DDA3937_RS00350	0.37	+0.2
81,624	-		DDA3937_RS00350	0.37	+0.4
81,635	+		DDA3937_RS00350	0.40	-0.4
81,635	+		DDA3937_RS00350	0.40	-0.8
81,635	+		DDA3937_RS00350	0.40	+0.2
81,636	-		DDA3937_RS00350	0.41	+0.7
81,636	-		DDA3937_RS00350	0.41	-0.2
81,636	-		DDA3937_RS00350	0.41	-0.5
81,636	-		DDA3937_RS00350	0.41	-0.9
81,636	-		DDA3937_RS00350	0.41	-0.5
81,636	-		DDA3937_RS00350	0.41	+0.1
81,636	-		DDA3937_RS00350	0.41	-0.7
81,636	-		DDA3937_RS00350	0.41	-0.5
81,636	-		DDA3937_RS00350	0.41	-0.7
81,636	-		DDA3937_RS00350	0.41	+1.9
81,636	-		DDA3937_RS00350	0.41	-0.8
81,636	-		DDA3937_RS00350	0.41	-1.6
81,636	-		DDA3937_RS00350	0.41	-0.3
81,636	-		DDA3937_RS00350	0.41	-0.3
81,641	+		DDA3937_RS00350	0.42	-1.3
81,641	+		DDA3937_RS00350	0.42	-0.3
81,641	+		DDA3937_RS00350	0.42	+0.3
81,641	+		DDA3937_RS00350	0.42	+1.2
81,641	+		DDA3937_RS00350	0.42	-0.3
81,641	+		DDA3937_RS00350	0.42	+0.3
81,641	+		DDA3937_RS00350	0.42	-0.0
81,641	+		DDA3937_RS00350	0.42	-0.0
81,642	-		DDA3937_RS00350	0.43	-0.3
81,642	-		DDA3937_RS00350	0.43	-0.8
81,642	-		DDA3937_RS00350	0.43	-0.1
81,642	-		DDA3937_RS00350	0.43	+0.4
81,642	-		DDA3937_RS00350	0.43	-0.3
81,642	-		DDA3937_RS00350	0.43	-0.4
81,642	-		DDA3937_RS00350	0.43	-1.2
81,707	+		DDA3937_RS00350	0.62	-0.6
81,707	+		DDA3937_RS00350	0.62	-0.5
81,707	+		DDA3937_RS00350	0.62	-0.3
81,707	+		DDA3937_RS00350	0.62	-1.8
81,707	+		DDA3937_RS00350	0.62	+1.6
81,708	-		DDA3937_RS00350	0.62	-0.3
81,708	-		DDA3937_RS00350	0.62	-1.6
81,708	-		DDA3937_RS00350	0.62	-0.2
81,708	-		DDA3937_RS00350	0.62	-0.8
81,708	-		DDA3937_RS00350	0.62	+0.8
81,708	-		DDA3937_RS00350	0.62	-0.9
81,713	+		DDA3937_RS00350	0.64	-2.2
81,713	+		DDA3937_RS00350	0.64	+1.0
81,713	+		DDA3937_RS00350	0.64	-1.1
81,713	+		DDA3937_RS00350	0.64	-0.1
81,713	+		DDA3937_RS00350	0.64	-1.6
81,714	-		DDA3937_RS00350	0.64	-1.0
81,714	-		DDA3937_RS00350	0.64	-0.2
81,714	-		DDA3937_RS00350	0.64	+0.4
81,719	-		DDA3937_RS00350	0.65	-0.8
81,719	-		DDA3937_RS00350	0.65	+0.4
81,739	+		DDA3937_RS00350	0.71	-1.1
81,739	+		DDA3937_RS00350	0.71	-0.3
81,740	-		DDA3937_RS00350	0.72	+0.5
81,757	+				-0.1
81,767	+		DDA3937_RS00350	0.80	-0.5
81,768	-		DDA3937_RS00350	0.80	+0.5
81,768	-		DDA3937_RS00350	0.80	-1.6
81,768	-		DDA3937_RS00350	0.80	+0.2
81,768	-		DDA3937_RS00350	0.80	-0.4
81,770	+		DDA3937_RS00350	0.81	-1.3
81,780	+		DDA3937_RS00350	0.84	-0.1
81,780	+		DDA3937_RS00350	0.84	+0.9
81,780	+		DDA3937_RS00350	0.84	-0.4
81,781	-		DDA3937_RS00350	0.84	-0.8
81,781	-		DDA3937_RS00350	0.84	+0.9
81,781	-		DDA3937_RS00350	0.84	-0.5
81,802	+				+0.1
81,802	+				+0.3
81,802	+				+1.8
81,802	+				-0.3
81,802	+				-0.2
81,802	+				+7.9
81,802	+				-1.0
81,802	+				+0.4
81,802	+				-1.3
81,802	+				+0.5
81,802	+				-0.2
81,802	+				+0.0
81,802	+				-1.0
81,802	+				+0.7
81,802	+				-1.3
81,802	+				+0.6
81,802	+				-0.3
81,802	+				-0.8
81,803	-				-1.7
81,803	-				-0.9
81,803	-				-0.4
81,803	-				-0.8
81,825	+				+0.9
81,825	+				-1.3
81,825	+				-1.9
81,826	-				+0.4
81,826	-				+1.2
81,828	+				-0.3
81,828	+				-0.3
81,828	+				-0.9
81,828	+				-0.1
81,829	-				-0.9
81,853	+				+0.6
81,908	+				-0.3
81,909	-				-1.9
81,909	-				+0.3
81,912	+				-0.7
81,912	+				+0.6
81,912	+				-1.3
81,912	+				-0.7
81,912	+				-1.0
81,912	+				-0.1
81,912	+				+2.2
81,913	-				-0.3
81,913	-				-0.2
81,913	-				+0.7
81,924	+				-0.4
81,938	+		DDA3937_RS22935	0.11	-0.2
81,939	-		DDA3937_RS22935	0.12	+0.9
82,037	+		DDA3937_RS22935	0.30	-0.3
82,038	-		DDA3937_RS22935	0.30	-0.1
82,038	-		DDA3937_RS22935	0.30	-0.1
82,038	-		DDA3937_RS22935	0.30	-1.0
82,048	+		DDA3937_RS22935	0.32	-0.0
82,063	+		DDA3937_RS22935	0.34	+1.7
82,136	-		DDA3937_RS22935	0.48	+0.2
82,155	+		DDA3937_RS22935	0.51	-1.4
82,164	+		DDA3937_RS22935	0.53	+0.5
82,164	+		DDA3937_RS22935	0.53	-0.9
82,164	+		DDA3937_RS22935	0.53	+0.4
82,165	-		DDA3937_RS22935	0.53	-1.6
82,166	+		DDA3937_RS22935	0.53	-1.3
82,167	-		DDA3937_RS22935	0.54	-1.0
82,168	+				+0.2
82,168	+		DDA3937_RS22935	0.54	-0.2
82,168	+		DDA3937_RS22935	0.54	-0.6
82,169	-		DDA3937_RS22935	0.54	-1.8
82,169	-		DDA3937_RS22935	0.54	+1.0
82,169	-		DDA3937_RS22935	0.54	-1.0
82,169	-		DDA3937_RS22935	0.54	+0.6
82,192	+		DDA3937_RS22935	0.58	+0.2
82,192	+		DDA3937_RS22935	0.58	-2.6
82,193	-		DDA3937_RS22935	0.58	-0.0
82,196	+		DDA3937_RS22935	0.59	-0.6
82,197	-		DDA3937_RS22935	0.59	-0.3
82,211	-		DDA3937_RS22935	0.62	+0.3
82,228	+		DDA3937_RS22935	0.65	-1.0
82,228	+		DDA3937_RS22935	0.65	+1.8
82,228	+		DDA3937_RS22935	0.65	-0.1
82,228	+		DDA3937_RS22935	0.65	-1.4
82,229	-		DDA3937_RS22935	0.65	-0.0
82,229	-		DDA3937_RS22935	0.65	-0.2
82,229	-		DDA3937_RS22935	0.65	+0.7
82,229	-		DDA3937_RS22935	0.65	+0.3
82,232	+		DDA3937_RS22935	0.66	+0.1
82,232	+		DDA3937_RS22935	0.66	-1.6
82,232	+		DDA3937_RS22935	0.66	-0.2
82,232	+		DDA3937_RS22935	0.66	+0.7
82,232	+		DDA3937_RS22935	0.66	-0.2
82,232	+		DDA3937_RS22935	0.66	-0.1
82,232	+		DDA3937_RS22935	0.66	-3.2
82,233	-		DDA3937_RS22935	0.66	+0.1
82,233	-		DDA3937_RS22935	0.66	-1.5
82,233	-		DDA3937_RS22935	0.66	-0.4
82,246	+		DDA3937_RS22935	0.68	-0.6
82,246	+		DDA3937_RS22935	0.68	+1.0
82,246	+		DDA3937_RS22935	0.68	-1.4
82,246	+		DDA3937_RS22935	0.68	+0.0
82,246	+		DDA3937_RS22935	0.68	+1.6
82,246	+		DDA3937_RS22935	0.68	+0.4
82,247	-		DDA3937_RS22935	0.68	+0.2
82,247	-		DDA3937_RS22935	0.68	+0.3
82,247	-		DDA3937_RS22935	0.68	+0.2
82,247	-		DDA3937_RS22935	0.68	-1.0
82,247	-		DDA3937_RS22935	0.68	-0.1
82,250	+				+0.2
82,250	+		DDA3937_RS22935	0.69	-1.9
82,250	+		DDA3937_RS22935	0.69	+0.0
82,250	+		DDA3937_RS22935	0.69	-1.8
82,250	+		DDA3937_RS22935	0.69	-0.3
82,250	+		DDA3937_RS22935	0.69	+6.1
82,250	+		DDA3937_RS22935	0.69	+2.6
82,251	-		DDA3937_RS22935	0.69	-1.2
82,251	-		DDA3937_RS22935	0.69	-0.3
82,253	+		DDA3937_RS22935	0.69	-1.1
82,319	+		DDA3937_RS22935	0.82	-0.3
82,319	+				+0.7
82,319	+		DDA3937_RS22935	0.82	-0.3
82,320	-		DDA3937_RS22935	0.82	-1.0
82,320	-		DDA3937_RS22935	0.82	+0.1
82,320	-		DDA3937_RS22935	0.82	-0.8
82,345	+		DDA3937_RS22935	0.86	-0.2
82,345	+		DDA3937_RS22935	0.86	-0.3
82,367	+				+1.1
82,367	+				-2.2
82,367	+				-1.6