Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00320 and DDA3937_RS00325 are separated by 198 nucleotides DDA3937_RS00325 and DDA3937_RS00330 are separated by 123 nucleotides DDA3937_RS00330 and DDA3937_RS00335 overlap by 17 nucleotides
DDA3937_RS00320: DDA3937_RS00320 - endonuclease/exonuclease/phosphatase family protein, at 74,745 to 75,608
_RS00320
DDA3937_RS00325: DDA3937_RS00325 - DUF1471 domain-containing protein, at 75,807 to 76,073
_RS00325
DDA3937_RS00330: DDA3937_RS00330 - hypothetical protein, at 76,197 to 76,829
_RS00330
DDA3937_RS00335: DDA3937_RS00335 - AAA family ATPase, at 76,813 to 78,273
_RS00335
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 74.846 kb on + strand, within DDA3937_RS00320 at 74.846 kb on + strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.938 kb on - strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.096 kb on - strand, within DDA3937_RS00320 at 75.098 kb on - strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.367 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.657 kb on - strand at 75.700 kb on - strand at 75.734 kb on + strand at 75.898 kb on + strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.947 kb on + strand, within DDA3937_RS00325 at 76.055 kb on - strand at 76.065 kb on + strand at 76.065 kb on + strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.071 kb on + strand at 76.071 kb on + strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.084 kb on - strand at 76.085 kb on + strand at 76.086 kb on - strand at 76.118 kb on - strand at 76.118 kb on - strand at 76.124 kb on + strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.243 kb on + strand at 76.341 kb on - strand, within DDA3937_RS00330 at 76.361 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.509 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.655 kb on + strand, within DDA3937_RS00330 at 76.682 kb on - strand, within DDA3937_RS00330 at 76.693 kb on + strand, within DDA3937_RS00330 at 76.693 kb on + strand, within DDA3937_RS00330 at 76.694 kb on - strand, within DDA3937_RS00330 at 76.808 kb on + strand at 76.809 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.834 kb on + strand at 76.853 kb on - strand at 76.855 kb on + strand at 76.855 kb on + strand at 76.855 kb on + strand at 76.856 kb on - strand at 76.916 kb on - strand at 77.028 kb on + strand, within DDA3937_RS00335 at 77.029 kb on - strand, within DDA3937_RS00335 at 77.046 kb on - strand, within DDA3937_RS00335
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 74,846 + DDA3937_RS00320 0.12 +0.2 74,846 + DDA3937_RS00320 0.12 -1.6 74,847 - DDA3937_RS00320 0.12 -0.1 74,847 - DDA3937_RS00320 0.12 -0.5 74,847 - DDA3937_RS00320 0.12 -0.7 74,847 - DDA3937_RS00320 0.12 +0.5 74,937 + DDA3937_RS00320 0.22 +1.8 74,937 + DDA3937_RS00320 0.22 -0.3 74,938 - DDA3937_RS00320 0.22 -0.8 75,095 + DDA3937_RS00320 0.41 -1.5 75,095 + DDA3937_RS00320 0.41 -0.3 75,095 + DDA3937_RS00320 0.41 -0.6 75,095 + DDA3937_RS00320 0.41 -0.3 75,096 - DDA3937_RS00320 0.41 +0.7 75,098 - DDA3937_RS00320 0.41 +1.1 75,153 + DDA3937_RS00320 0.47 +0.2 75,153 + DDA3937_RS00320 0.47 -0.6 75,153 + DDA3937_RS00320 0.47 -1.3 75,153 + DDA3937_RS00320 0.47 -0.7 75,153 + DDA3937_RS00320 0.47 -0.5 75,153 + DDA3937_RS00320 0.47 -3.1 75,153 + DDA3937_RS00320 0.47 -1.4 75,153 + DDA3937_RS00320 0.47 -0.3 75,153 + DDA3937_RS00320 0.47 -0.1 75,154 - DDA3937_RS00320 0.47 +0.7 75,154 - DDA3937_RS00320 0.47 -2.5 75,154 - DDA3937_RS00320 0.47 -0.2 75,154 - DDA3937_RS00320 0.47 -0.8 75,155 + DDA3937_RS00320 0.47 +1.6 75,155 + DDA3937_RS00320 0.47 -0.6 75,156 - DDA3937_RS00320 0.48 -3.1 75,156 - DDA3937_RS00320 0.48 -2.1 75,156 - DDA3937_RS00320 0.48 -1.5 75,158 + DDA3937_RS00320 0.48 -0.1 75,158 + DDA3937_RS00320 0.48 -0.4 75,159 - DDA3937_RS00320 0.48 -1.0 75,159 - DDA3937_RS00320 0.48 -1.8 75,159 - DDA3937_RS00320 0.48 +1.1 75,366 + DDA3937_RS00320 0.72 -0.7 75,366 + DDA3937_RS00320 0.72 -0.9 75,366 + DDA3937_RS00320 0.72 +0.9 75,367 - DDA3937_RS00320 0.72 -0.3 75,474 - DDA3937_RS00320 0.84 -0.1 75,474 - DDA3937_RS00320 0.84 -0.8 75,657 - +1.0 75,700 - -1.6 75,734 + +1.1 75,898 + DDA3937_RS00325 0.34 +0.2 75,899 - DDA3937_RS00325 0.34 +3.6 75,899 - DDA3937_RS00325 0.34 +0.9 75,899 - DDA3937_RS00325 0.34 -0.8 75,947 + DDA3937_RS00325 0.52 +3.0 76,055 - +2.9 76,065 + -0.9 76,065 + -0.2 76,066 - -1.0 76,066 - -0.6 76,066 - -0.4 76,066 - -1.2 76,066 - +0.2 76,071 + +0.2 76,071 + -0.5 76,072 - -0.0 76,072 - -0.3 76,072 - +0.3 76,072 - -0.3 76,072 - +0.6 76,079 + -0.1 76,079 + -1.2 76,079 + -0.8 76,079 + -0.1 76,080 - +2.2 76,080 - -1.0 76,080 - -1.7 76,083 + +0.0 76,083 + -0.7 76,083 + -1.6 76,083 + -0.1 76,083 + -0.9 76,084 - -1.3 76,085 + -1.3 76,086 - -1.5 76,118 - -0.4 76,118 - -0.9 76,124 + -0.1 76,125 - -1.2 76,125 - +0.8 76,125 - -0.5 76,243 + -1.0 76,341 - DDA3937_RS00330 0.23 -1.7 76,361 + DDA3937_RS00330 0.26 +0.5 76,374 + DDA3937_RS00330 0.28 -0.6 76,374 + DDA3937_RS00330 0.28 -1.1 76,374 + DDA3937_RS00330 0.28 +1.5 76,374 + DDA3937_RS00330 0.28 -0.1 76,375 - DDA3937_RS00330 0.28 -2.9 76,375 - DDA3937_RS00330 0.28 -0.4 76,375 - DDA3937_RS00330 0.28 +1.2 76,375 - DDA3937_RS00330 0.28 -0.8 76,418 + DDA3937_RS00330 0.35 +0.0 76,418 + DDA3937_RS00330 0.35 -0.8 76,418 + DDA3937_RS00330 0.35 +0.1 76,418 + DDA3937_RS00330 0.35 -0.4 76,419 - DDA3937_RS00330 0.35 +0.3 76,419 - DDA3937_RS00330 0.35 -1.7 76,422 + DDA3937_RS00330 0.36 -1.6 76,422 + DDA3937_RS00330 0.36 -0.0 76,431 - DDA3937_RS00330 0.37 +2.1 76,431 - DDA3937_RS00330 0.37 +1.2 76,478 + DDA3937_RS00330 0.44 +0.6 76,478 + DDA3937_RS00330 0.44 -1.0 76,478 + DDA3937_RS00330 0.44 -0.5 76,509 + DDA3937_RS00330 0.49 +0.4 76,565 + DDA3937_RS00330 0.58 -0.2 76,565 + DDA3937_RS00330 0.58 +2.0 76,565 + DDA3937_RS00330 0.58 -0.0 76,565 + DDA3937_RS00330 0.58 -1.6 76,566 - DDA3937_RS00330 0.58 +0.4 76,566 - DDA3937_RS00330 0.58 -1.1 76,568 + DDA3937_RS00330 0.59 -2.3 76,568 + DDA3937_RS00330 0.59 -1.9 76,568 + DDA3937_RS00330 0.59 -1.2 76,568 + DDA3937_RS00330 0.59 -0.3 76,568 + DDA3937_RS00330 0.59 -0.5 76,568 + DDA3937_RS00330 0.59 -1.9 76,569 - DDA3937_RS00330 0.59 -1.3 76,569 - DDA3937_RS00330 0.59 +0.2 76,569 - DDA3937_RS00330 0.59 +1.2 76,655 + DDA3937_RS00330 0.72 -0.1 76,682 - DDA3937_RS00330 0.77 -0.8 76,693 + DDA3937_RS00330 0.78 +0.1 76,693 + DDA3937_RS00330 0.78 -1.7 76,694 - DDA3937_RS00330 0.79 +0.2 76,808 + -1.3 76,809 - +1.2 76,815 - -0.7 76,815 - +1.8 76,834 + -1.9 76,853 - -0.3 76,855 + -0.1 76,855 + -0.0 76,855 + +0.7 76,856 - -1.3 76,916 - +2.0 77,028 + DDA3937_RS00335 0.15 +0.8 77,029 - DDA3937_RS00335 0.15 +0.0 77,046 - DDA3937_RS00335 0.16 -0.9
Or see this region's nucleotide sequence