Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00200

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
47,709	+		DDA3937_RS00195	0.64	-0.9
47,709	+		DDA3937_RS00195	0.64	-0.6
47,709	+		DDA3937_RS00195	0.64	+0.2
47,709	+		DDA3937_RS00195	0.64	-0.8
47,709	+		DDA3937_RS00195	0.64	-1.1
47,709	+		DDA3937_RS00195	0.64	+1.6
47,709	+		DDA3937_RS00195	0.64	-0.0
47,709	+		DDA3937_RS00195	0.64	-0.2
47,709	+		DDA3937_RS00195	0.64	+0.3
47,710	-		DDA3937_RS00195	0.64	+0.3
47,710	-		DDA3937_RS00195	0.64	-0.4
47,710	-		DDA3937_RS00195	0.64	-1.6
47,710	-		DDA3937_RS00195	0.64	-0.3
47,710	-		DDA3937_RS00195	0.64	-0.7
47,710	-		DDA3937_RS00195	0.64	+1.0
47,710	-		DDA3937_RS00195	0.64	-0.6
47,710	-		DDA3937_RS00195	0.64	-2.1
47,710	-		DDA3937_RS00195	0.64	-0.5
47,710	-		DDA3937_RS00195	0.64	+0.5
47,710	-		DDA3937_RS00195	0.64	+1.1
47,889	+		DDA3937_RS00195	0.75	-0.2
48,111	+		DDA3937_RS00195	0.88	-1.6
48,111	+		DDA3937_RS00195	0.88	+0.0
48,317	+				+0.4
48,336	+				-1.9
48,337	-				+0.7
48,337	-				-2.7
48,342	+				-0.0
48,342	+				-0.0
48,342	+				+0.0
48,343	-				+1.4
48,350	-				+0.4
48,353	+				-0.8
48,353	+				+0.5
48,354	-				+0.2
48,410	+				-2.5
48,417	-				+0.4
48,417	-				-0.5
48,417	-				-0.9
48,457	+				-0.6
48,462	-				-1.5
48,515	-				-1.1
48,515	-				+0.4
48,527	+				-0.9
48,528	-				-2.2
48,528	-				-0.0
48,528	-				-0.1
48,528	-				-0.2
48,529	+				-0.1
48,598	+				-1.3
48,627	+				-0.8
48,627	+				-0.5
48,628	-				-0.8
48,667	-				+0.5
48,667	-				+0.2
48,707	-				+0.7
48,707	-				+0.2
48,707	-				-1.1
48,731	+				+0.6
48,731	+				-0.8
48,731	+				-0.4
48,731	+				-1.3
48,731	+				-0.3
48,731	+				-0.7
48,731	+				-0.8
48,731	+				+0.1
48,731	+				+0.8
48,731	+				-2.1
48,732	-				-0.3
48,732	-				-0.4
48,732	-				+0.1
48,732	-				+0.2
48,732	-				+0.7
48,732	-				-1.3
48,732	-				+0.9
48,732	-				-0.0
48,732	-				+1.2
48,732	-				+1.7
48,732	-				-1.0
48,732	-				-2.8
48,733	+				-0.6
48,775	-				+0.2
48,816	-				-0.3
48,816	-				-1.3
48,816	-				-0.1
48,817	+				+0.6
48,818	-				-1.5
48,910	+		DDA3937_RS00200	0.14	+0.8
48,950	+		DDA3937_RS00200	0.16	-2.8
48,950	+				+1.2
48,951	-		DDA3937_RS00200	0.16	+0.7
48,951	-		DDA3937_RS00200	0.16	-2.3
48,953	+		DDA3937_RS00200	0.16	+0.4
48,953	+		DDA3937_RS00200	0.16	-0.3
48,953	+		DDA3937_RS00200	0.16	-0.6
48,953	+		DDA3937_RS00200	0.16	-1.0
48,953	+		DDA3937_RS00200	0.16	+0.6
48,954	-		DDA3937_RS00200	0.16	-0.2
48,954	-		DDA3937_RS00200	0.16	-0.8
48,954	-		DDA3937_RS00200	0.16	-0.6
48,954	-		DDA3937_RS00200	0.16	+0.9
48,954	-		DDA3937_RS00200	0.16	+0.5
48,954	-		DDA3937_RS00200	0.16	+1.2
48,967	+		DDA3937_RS00200	0.17	+0.6
48,968	-		DDA3937_RS00200	0.17	-0.3
48,968	-		DDA3937_RS00200	0.17	-0.3
49,016	-		DDA3937_RS00200	0.20	-0.6
49,024	-		DDA3937_RS00200	0.21	+0.4
49,138	+		DDA3937_RS00200	0.27	-0.6
49,139	-		DDA3937_RS00200	0.27	-1.6
49,139	-		DDA3937_RS00200	0.27	-0.2
49,194	+		DDA3937_RS00200	0.31	-1.0
49,194	+		DDA3937_RS00200	0.31	+0.3
49,195	-		DDA3937_RS00200	0.31	-1.6
49,206	+		DDA3937_RS00200	0.31	+3.1
49,207	-		DDA3937_RS00200	0.31	-0.4
49,211	+		DDA3937_RS00200	0.32	+1.2
49,212	-		DDA3937_RS00200	0.32	+0.5
49,212	-		DDA3937_RS00200	0.32	+1.0
49,224	+		DDA3937_RS00200	0.33	+1.3
49,224	+		DDA3937_RS00200	0.33	-0.6
49,228	+		DDA3937_RS00200	0.33	+0.0
49,229	-		DDA3937_RS00200	0.33	+0.0
49,229	-		DDA3937_RS00200	0.33	+1.4
49,229	-		DDA3937_RS00200	0.33	-1.5
49,250	-		DDA3937_RS00200	0.34	-1.6
49,269	-		DDA3937_RS00200	0.35	-0.1
49,292	+		DDA3937_RS00200	0.37	-0.3
49,292	+		DDA3937_RS00200	0.37	-0.8
49,292	+		DDA3937_RS00200	0.37	-0.6
49,292	+		DDA3937_RS00200	0.37	+0.2
49,292	+		DDA3937_RS00200	0.37	+0.9
49,292	+		DDA3937_RS00200	0.37	+0.2
49,293	-		DDA3937_RS00200	0.37	+3.7
49,297	-		DDA3937_RS00200	0.37	-0.9
49,335	-		DDA3937_RS00200	0.39	+0.6
49,335	-		DDA3937_RS00200	0.39	-0.8
49,343	+		DDA3937_RS00200	0.40	+0.1
49,393	+		DDA3937_RS00200	0.43	-1.7
49,393	+		DDA3937_RS00200	0.43	-0.3
49,393	+		DDA3937_RS00200	0.43	-1.1
49,394	-		DDA3937_RS00200	0.43	-1.0
49,394	-		DDA3937_RS00200	0.43	+0.9
49,397	+		DDA3937_RS00200	0.43	-1.3
49,427	+		DDA3937_RS00200	0.45	+1.4
49,427	+		DDA3937_RS00200	0.45	-0.2
49,427	+		DDA3937_RS00200	0.45	-0.8
49,427	+		DDA3937_RS00200	0.45	-0.2
49,427	+		DDA3937_RS00200	0.45	-1.0
49,428	-		DDA3937_RS00200	0.45	-0.4
49,428	-		DDA3937_RS00200	0.45	-1.9
49,428	-		DDA3937_RS00200	0.45	+0.2
49,428	-		DDA3937_RS00200	0.45	+0.6
49,428	-		DDA3937_RS00200	0.45	+0.1
49,428	-		DDA3937_RS00200	0.45	-0.4
49,428	-		DDA3937_RS00200	0.45	-1.6
49,428	-		DDA3937_RS00200	0.45	-0.9
49,469	-		DDA3937_RS00200	0.47	-0.3
49,484	+		DDA3937_RS00200	0.48	-1.3
49,495	+		DDA3937_RS00200	0.49	-0.5
49,495	+		DDA3937_RS00200	0.49	+0.9
49,712	+		DDA3937_RS00200	0.61	+0.5
49,712	+		DDA3937_RS00200	0.61	-0.6
49,712	+		DDA3937_RS00200	0.61	+0.4
49,712	+		DDA3937_RS00200	0.61	-0.4
49,712	+		DDA3937_RS00200	0.61	+0.1
49,713	-		DDA3937_RS00200	0.62	-0.9
49,713	-		DDA3937_RS00200	0.62	-0.1
49,715	-		DDA3937_RS00200	0.62	+1.2
49,736	+		DDA3937_RS00200	0.63	-0.3
49,736	+		DDA3937_RS00200	0.63	-0.6
49,736	+		DDA3937_RS00200	0.63	-0.2
49,737	-		DDA3937_RS00200	0.63	+0.9
49,737	-		DDA3937_RS00200	0.63	-0.5
49,883	+		DDA3937_RS00200	0.72	+0.5
49,883	+		DDA3937_RS00200	0.72	+0.2
49,884	-		DDA3937_RS00200	0.72	+1.0
49,884	-		DDA3937_RS00200	0.72	-0.6
49,889	+		DDA3937_RS00200	0.72	-2.7
49,913	+		DDA3937_RS00200	0.73	+0.4
49,914	-		DDA3937_RS00200	0.73	-0.6
49,914	-		DDA3937_RS00200	0.73	+1.2
49,914	-		DDA3937_RS00200	0.73	-0.0
49,914	-		DDA3937_RS00200	0.73	-0.8
49,914	-		DDA3937_RS00200	0.73	+0.4
49,922	+		DDA3937_RS00200	0.74	+1.0
49,937	-		DDA3937_RS00200	0.75	-1.1
49,937	-		DDA3937_RS00200	0.75	-0.7
50,000	+		DDA3937_RS00200	0.79	-0.6
50,000	+		DDA3937_RS00200	0.79	-1.6
50,001	-		DDA3937_RS00200	0.79	+0.2
50,003	-		DDA3937_RS00200	0.79	+0.6
50,003	-		DDA3937_RS00200	0.79	-1.6
50,063	+		DDA3937_RS00200	0.82	-0.3
50,063	+		DDA3937_RS00200	0.82	+3.2
50,063	+		DDA3937_RS00200	0.82	-0.3
50,064	-		DDA3937_RS00200	0.82	-1.0
50,064	-		DDA3937_RS00200	0.82	+0.1
50,064	-		DDA3937_RS00200	0.82	-1.0
50,064	-		DDA3937_RS00200	0.82	+1.2
50,064	-				+0.2
50,099	+		DDA3937_RS00200	0.84	-0.7
50,099	+		DDA3937_RS00200	0.84	-0.3
50,099	+		DDA3937_RS00200	0.84	+0.7
50,099	+		DDA3937_RS00200	0.84	-0.1
50,099	+		DDA3937_RS00200	0.84	-1.3
50,100	-		DDA3937_RS00200	0.85	-0.2
50,100	-		DDA3937_RS00200	0.85	-0.1
50,158	+		DDA3937_RS00200	0.88	-0.3
50,158	+		DDA3937_RS00200	0.88	+0.9
50,180	+		DDA3937_RS00200	0.89	-1.5
50,180	+		DDA3937_RS00200	0.89	-0.8
50,180	+		DDA3937_RS00200	0.89	-1.1
50,180	+		DDA3937_RS00200	0.89	+0.8
50,181	-				+1.2
50,181	-		DDA3937_RS00200	0.89	+0.3
50,181	-		DDA3937_RS00200	0.89	-0.8
50,181	-		DDA3937_RS00200	0.89	-1.1
50,181	-		DDA3937_RS00200	0.89	-0.1
50,198	-				-0.8
50,296	+				-0.4
50,296	+				+0.4
50,296	+				+2.1
50,296	+				-1.0
50,296	+				+0.4
50,296	+				+0.2
50,296	+				-0.5
50,297	-				-0.8
50,297	-				+0.3
50,297	-				+0.1
50,297	-				-2.1
50,297	-				-0.5
50,297	-				-0.1
50,297	-				+0.3
50,297	-				-1.1
50,297	-				-0.1
50,297	-				+1.2
50,297	-				-0.8
50,329	+				-0.3
50,341	+				+0.1
50,341	+				-0.3
50,373	+				-0.4
50,373	+				+1.9
50,374	-				-0.2
50,374	-				-0.6
50,374	-				-0.3
50,479	+				+0.4
50,479	+				-2.5
50,479	+				+1.6
50,479	+				-1.3
50,480	-				-0.6
50,480	-				-1.6
50,498	+				-1.7
50,499	-				-2.2
50,499	-				-1.0
50,741	+				-0.1
50,742	-				-0.5
50,913	+				-0.8
50,926	-				+0.7
50,930	+				+1.3
50,930	+				+0.2
50,931	-				-0.3
51,024	+				+0.1
51,024	+				+0.4
51,024	+				-1.3
51,025	-				+0.2
51,025	-				+0.2
51,123	+		DDA3937_RS00210	0.16	+3.4
51,124	-		DDA3937_RS00210	0.17	-0.8
51,124	-		DDA3937_RS00210	0.17	-1.6
51,124	-		DDA3937_RS00210	0.17	-1.0
51,124	-		DDA3937_RS00210	0.17	+0.9
51,124	-		DDA3937_RS00210	0.17	-0.4
51,124	-		DDA3937_RS00210	0.17	-1.2
51,190	+		DDA3937_RS00210	0.27	+0.0
51,225	+		DDA3937_RS00210	0.33	-0.1
51,226	-		DDA3937_RS00210	0.33	+0.2
51,279	+		DDA3937_RS00210	0.41	+0.5
51,279	+		DDA3937_RS00210	0.41	+0.5
51,279	+		DDA3937_RS00210	0.41	-0.2
51,282	+		DDA3937_RS00210	0.42	-0.4
51,282	+				-0.8
51,282	+		DDA3937_RS00210	0.42	-0.0
51,282	+		DDA3937_RS00210	0.42	-1.1
51,282	+		DDA3937_RS00210	0.42	-0.6
51,282	+		DDA3937_RS00210	0.42	-0.8
51,282	+		DDA3937_RS00210	0.42	-0.4
51,283	-		DDA3937_RS00210	0.42	-0.4
51,283	-		DDA3937_RS00210	0.42	-0.3
51,283	-		DDA3937_RS00210	0.42	-0.7
51,283	-		DDA3937_RS00210	0.42	-1.1
51,303	+		DDA3937_RS00210	0.45	+3.8
51,304	-		DDA3937_RS00210	0.45	-0.5
51,304	-		DDA3937_RS00210	0.45	-1.4
51,304	-		DDA3937_RS00210	0.45	-0.2
51,304	-		DDA3937_RS00210	0.45	-0.1
51,355	+		DDA3937_RS00210	0.53	-1.9
51,356	-		DDA3937_RS00210	0.54	-0.0
51,356	-		DDA3937_RS00210	0.54	-0.4
51,356	-		DDA3937_RS00210	0.54	+1.0