Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00110 and DDA3937_RS00115 are separated by 223 nucleotides DDA3937_RS00115 and DDA3937_RS00120 are separated by 181 nucleotides DDA3937_RS00120 and DDA3937_RS22930 are separated by 74 nucleotides DDA3937_RS22930 and DDA3937_RS00125 are separated by 146 nucleotides
DDA3937_RS00110: DDA3937_RS00110 - YihA family ribosome biogenesis GTP-binding protein, at 25,090 to 25,734
_RS00110
DDA3937_RS00115: DDA3937_RS00115 - Der GTPase-activating protein YihI, at 25,958 to 26,491
_RS00115
DDA3937_RS00120: DDA3937_RS00120 - oxygen-independent coproporphyrinogen III oxidase, at 26,673 to 28,046
_RS00120
DDA3937_RS22930: DDA3937_RS22930 - YshB family small membrane protein, at 28,121 to 28,243
_RS22930
DDA3937_RS00125: DDA3937_RS00125 - nitrogen regulation protein NR(I), at 28,390 to 29,802
_RS00125
Position (kb) 26
27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.748 kb on - strand at 25.748 kb on - strand at 25.748 kb on - strand at 25.765 kb on - strand at 25.777 kb on - strand at 25.778 kb on + strand at 25.779 kb on - strand at 25.779 kb on - strand at 25.807 kb on + strand at 25.808 kb on - strand at 25.808 kb on - strand at 25.836 kb on + strand at 25.852 kb on + strand at 25.892 kb on - strand at 25.892 kb on - strand at 25.904 kb on - strand at 25.925 kb on + strand at 25.925 kb on + strand at 25.926 kb on - strand at 25.927 kb on + strand at 25.927 kb on + strand at 25.927 kb on + strand at 25.927 kb on + strand at 25.928 kb on - strand at 25.928 kb on - strand at 26.156 kb on - strand, within DDA3937_RS00115 at 26.195 kb on - strand, within DDA3937_RS00115 at 26.375 kb on - strand, within DDA3937_RS00115 at 26.380 kb on + strand, within DDA3937_RS00115 at 26.386 kb on + strand, within DDA3937_RS00115 at 26.387 kb on - strand, within DDA3937_RS00115 at 26.446 kb on + strand at 26.447 kb on - strand at 26.447 kb on - strand at 26.447 kb on - strand at 26.447 kb on - strand at 26.516 kb on + strand at 26.517 kb on - strand at 26.523 kb on - strand at 26.523 kb on - strand at 26.556 kb on + strand at 26.574 kb on + strand at 26.591 kb on + strand at 26.591 kb on + strand at 26.591 kb on + strand at 26.592 kb on - strand at 26.592 kb on - strand at 26.603 kb on + strand at 26.689 kb on + strand at 26.690 kb on - strand at 26.690 kb on - strand at 26.690 kb on - strand at 26.690 kb on - strand at 26.690 kb on - strand at 26.690 kb on - strand at 26.701 kb on + strand at 26.701 kb on + strand at 26.701 kb on + strand at 26.702 kb on - strand at 26.718 kb on + strand at 26.718 kb on + strand at 26.718 kb on + strand at 26.719 kb on - strand at 26.719 kb on - strand at 26.719 kb on - strand at 26.719 kb on - strand at 26.724 kb on + strand at 26.739 kb on + strand at 26.740 kb on - strand at 26.748 kb on + strand at 26.774 kb on + strand at 26.774 kb on + strand at 26.774 kb on + strand at 26.774 kb on + strand at 26.774 kb on + strand at 26.774 kb on + strand at 26.775 kb on - strand at 26.778 kb on + strand at 26.778 kb on + strand at 26.778 kb on + strand at 26.778 kb on + strand at 26.779 kb on - strand at 26.779 kb on - strand at 26.779 kb on - strand at 26.838 kb on + strand, within DDA3937_RS00120 at 26.839 kb on - strand, within DDA3937_RS00120 at 26.839 kb on - strand, within DDA3937_RS00120 at 26.839 kb on - strand, within DDA3937_RS00120 at 26.871 kb on + strand, within DDA3937_RS00120 at 26.871 kb on + strand, within DDA3937_RS00120 at 26.872 kb on - strand at 26.872 kb on - strand, within DDA3937_RS00120 at 26.872 kb on - strand, within DDA3937_RS00120 at 26.872 kb on - strand, within DDA3937_RS00120 at 26.888 kb on + strand, within DDA3937_RS00120 at 26.888 kb on + strand, within DDA3937_RS00120 at 26.889 kb on - strand, within DDA3937_RS00120 at 26.889 kb on - strand, within DDA3937_RS00120 at 26.925 kb on + strand, within DDA3937_RS00120 at 26.925 kb on + strand, within DDA3937_RS00120 at 26.925 kb on + strand, within DDA3937_RS00120 at 27.042 kb on - strand, within DDA3937_RS00120 at 27.069 kb on + strand, within DDA3937_RS00120 at 27.069 kb on + strand, within DDA3937_RS00120 at 27.176 kb on + strand, within DDA3937_RS00120 at 27.176 kb on + strand, within DDA3937_RS00120 at 27.176 kb on + strand, within DDA3937_RS00120 at 27.197 kb on + strand, within DDA3937_RS00120 at 27.306 kb on + strand, within DDA3937_RS00120 at 27.344 kb on + strand, within DDA3937_RS00120 at 27.383 kb on + strand, within DDA3937_RS00120 at 27.383 kb on + strand, within DDA3937_RS00120 at 27.388 kb on + strand, within DDA3937_RS00120 at 27.396 kb on + strand, within DDA3937_RS00120 at 27.517 kb on - strand, within DDA3937_RS00120 at 27.610 kb on - strand, within DDA3937_RS00120 at 27.610 kb on - strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.662 kb on + strand, within DDA3937_RS00120 at 27.662 kb on + strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.678 kb on + strand, within DDA3937_RS00120 at 27.679 kb on - strand, within DDA3937_RS00120 at 27.679 kb on - strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.846 kb on + strand, within DDA3937_RS00120 at 27.846 kb on + strand, within DDA3937_RS00120 at 27.868 kb on - strand, within DDA3937_RS00120 at 27.923 kb on + strand at 27.923 kb on + strand at 27.977 kb on + strand at 27.977 kb on + strand at 27.978 kb on - strand at 27.978 kb on - strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.040 kb on + strand at 28.040 kb on + strand at 28.062 kb on + strand at 28.062 kb on + strand at 28.107 kb on + strand at 28.107 kb on + strand at 28.107 kb on + strand at 28.108 kb on - strand at 28.122 kb on + strand at 28.122 kb on + strand at 28.123 kb on - strand at 28.123 kb on - strand at 28.274 kb on + strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.295 kb on - strand at 28.300 kb on - strand at 28.306 kb on + strand at 28.306 kb on + strand at 28.307 kb on - strand at 28.307 kb on - strand at 28.307 kb on - strand at 28.320 kb on + strand at 28.320 kb on + strand at 28.320 kb on + strand at 28.321 kb on - strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.326 kb on - strand at 28.326 kb on - strand at 28.326 kb on - strand at 28.327 kb on + strand at 28.327 kb on + strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.372 kb on + strand at 28.829 kb on + strand, within DDA3937_RS00125
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 25,748 - -2.4 25,748 - -0.3 25,748 - +0.2 25,765 - -1.9 25,777 - +0.9 25,778 + +0.1 25,779 - -0.6 25,779 - +1.4 25,807 + +0.1 25,808 - -1.9 25,808 - -1.8 25,836 + -0.5 25,852 + -0.4 25,892 - -0.1 25,892 - -0.8 25,904 - +0.3 25,925 + +1.6 25,925 + -0.4 25,926 - +1.6 25,927 + -1.5 25,927 + +0.4 25,927 + -1.0 25,927 + +0.1 25,928 - -0.2 25,928 - +1.2 26,156 - DDA3937_RS00115 0.37 -0.2 26,195 - DDA3937_RS00115 0.44 -0.7 26,375 - DDA3937_RS00115 0.78 -0.2 26,380 + DDA3937_RS00115 0.79 -0.3 26,386 + DDA3937_RS00115 0.80 -0.3 26,387 - DDA3937_RS00115 0.80 +1.0 26,446 + +0.1 26,447 - +0.5 26,447 - -1.3 26,447 - +1.9 26,447 - -0.3 26,516 + -0.5 26,517 - -0.3 26,523 - -1.9 26,523 - -0.6 26,556 + -0.2 26,574 + -0.3 26,591 + +0.0 26,591 + -1.1 26,591 + +0.5 26,592 - -0.4 26,592 - -2.5 26,603 + +0.2 26,689 + -2.1 26,690 - -0.8 26,690 - -1.2 26,690 - +0.1 26,690 - +0.2 26,690 - -1.1 26,690 - +0.1 26,701 + +2.7 26,701 + +0.0 26,701 + -1.0 26,702 - -0.6 26,718 + +0.2 26,718 + +0.6 26,718 + -1.0 26,719 - -0.6 26,719 - +0.1 26,719 - -0.0 26,719 - -0.2 26,724 + -2.0 26,739 + -0.8 26,740 - -3.0 26,748 + -0.9 26,774 + -0.2 26,774 + -1.7 26,774 + -1.0 26,774 + -0.9 26,774 + -0.4 26,774 + -1.2 26,775 - -1.3 26,778 + +1.4 26,778 + -1.8 26,778 + +0.7 26,778 + -0.8 26,779 - +0.5 26,779 - -0.9 26,779 - -0.8 26,838 + DDA3937_RS00120 0.12 -0.5 26,839 - DDA3937_RS00120 0.12 -1.3 26,839 - DDA3937_RS00120 0.12 -0.7 26,839 - DDA3937_RS00120 0.12 +0.2 26,871 + DDA3937_RS00120 0.14 -0.9 26,871 + DDA3937_RS00120 0.14 -0.8 26,872 - +1.2 26,872 - DDA3937_RS00120 0.14 -1.5 26,872 - DDA3937_RS00120 0.14 -0.4 26,872 - DDA3937_RS00120 0.14 -0.9 26,888 + DDA3937_RS00120 0.16 -1.1 26,888 + DDA3937_RS00120 0.16 -0.6 26,889 - DDA3937_RS00120 0.16 -0.4 26,889 - DDA3937_RS00120 0.16 -0.1 26,925 + DDA3937_RS00120 0.18 -0.6 26,925 + DDA3937_RS00120 0.18 -0.8 26,925 + DDA3937_RS00120 0.18 -1.6 27,042 - DDA3937_RS00120 0.27 -1.0 27,069 + DDA3937_RS00120 0.29 -1.7 27,069 + DDA3937_RS00120 0.29 -1.6 27,176 + DDA3937_RS00120 0.37 -2.7 27,176 + DDA3937_RS00120 0.37 -1.1 27,176 + DDA3937_RS00120 0.37 -1.2 27,197 + DDA3937_RS00120 0.38 -0.3 27,306 + DDA3937_RS00120 0.46 -0.4 27,344 + DDA3937_RS00120 0.49 -1.9 27,383 + DDA3937_RS00120 0.52 -0.9 27,383 + DDA3937_RS00120 0.52 -0.9 27,388 + DDA3937_RS00120 0.52 -0.7 27,396 + DDA3937_RS00120 0.53 -0.6 27,517 - DDA3937_RS00120 0.61 -0.2 27,610 - DDA3937_RS00120 0.68 -1.1 27,610 - DDA3937_RS00120 0.68 -0.3 27,611 + DDA3937_RS00120 0.68 -0.4 27,611 + DDA3937_RS00120 0.68 -1.5 27,611 + -0.8 27,611 + DDA3937_RS00120 0.68 +0.7 27,611 + DDA3937_RS00120 0.68 -2.2 27,611 + DDA3937_RS00120 0.68 +0.3 27,611 + DDA3937_RS00120 0.68 -2.0 27,611 + DDA3937_RS00120 0.68 -1.0 27,611 + DDA3937_RS00120 0.68 +1.2 27,612 - DDA3937_RS00120 0.68 -0.1 27,612 - DDA3937_RS00120 0.68 -0.6 27,612 - +2.2 27,612 - DDA3937_RS00120 0.68 -1.0 27,612 - DDA3937_RS00120 0.68 -0.9 27,612 - DDA3937_RS00120 0.68 -1.1 27,612 - DDA3937_RS00120 0.68 -0.6 27,662 + DDA3937_RS00120 0.72 -1.6 27,662 + DDA3937_RS00120 0.72 -1.1 27,663 - DDA3937_RS00120 0.72 -0.9 27,663 - DDA3937_RS00120 0.72 -1.3 27,663 - DDA3937_RS00120 0.72 -1.1 27,663 - DDA3937_RS00120 0.72 -2.0 27,663 - DDA3937_RS00120 0.72 -1.3 27,663 - DDA3937_RS00120 0.72 -0.9 27,678 + DDA3937_RS00120 0.73 -2.7 27,679 - DDA3937_RS00120 0.73 -1.3 27,679 - DDA3937_RS00120 0.73 -0.8 27,708 + DDA3937_RS00120 0.75 -1.8 27,708 + DDA3937_RS00120 0.75 -1.5 27,708 + DDA3937_RS00120 0.75 -1.6 27,709 - DDA3937_RS00120 0.75 -0.6 27,709 - DDA3937_RS00120 0.75 -1.0 27,709 - DDA3937_RS00120 0.75 +1.0 27,711 + DDA3937_RS00120 0.76 -0.4 27,711 + DDA3937_RS00120 0.76 -1.0 27,711 + DDA3937_RS00120 0.76 +0.6 27,712 - DDA3937_RS00120 0.76 -1.3 27,712 - DDA3937_RS00120 0.76 -1.4 27,712 - DDA3937_RS00120 0.76 -1.3 27,790 + DDA3937_RS00120 0.81 -0.4 27,790 + DDA3937_RS00120 0.81 -1.8 27,790 + DDA3937_RS00120 0.81 -0.2 27,790 + DDA3937_RS00120 0.81 +1.7 27,790 + DDA3937_RS00120 0.81 -0.3 27,790 + DDA3937_RS00120 0.81 -2.6 27,790 + DDA3937_RS00120 0.81 -2.0 27,791 - DDA3937_RS00120 0.81 -1.4 27,791 - DDA3937_RS00120 0.81 -1.6 27,791 - DDA3937_RS00120 0.81 -1.3 27,791 - DDA3937_RS00120 0.81 -1.8 27,794 - DDA3937_RS00120 0.82 -0.4 27,794 - DDA3937_RS00120 0.82 -0.8 27,794 - DDA3937_RS00120 0.82 -1.1 27,794 - DDA3937_RS00120 0.82 -0.7 27,794 - DDA3937_RS00120 0.82 -0.9 27,846 + DDA3937_RS00120 0.85 +0.0 27,846 + DDA3937_RS00120 0.85 -0.2 27,868 - DDA3937_RS00120 0.87 -0.7 27,923 + -0.3 27,923 + +0.8 27,977 + +0.3 27,977 + -0.8 27,978 - +0.9 27,978 - +0.2 27,999 + -2.0 27,999 + -0.2 27,999 + -0.5 27,999 + -0.5 27,999 + +0.9 27,999 + -2.5 28,000 - -0.2 28,000 - -1.9 28,000 - +0.6 28,000 - -1.3 28,000 - +1.1 28,000 - -1.5 28,000 - -1.2 28,000 - -1.6 28,000 - +0.7 28,040 + -1.1 28,040 + +0.2 28,062 + -1.1 28,062 + -2.1 28,107 + -0.2 28,107 + +0.2 28,107 + +0.1 28,108 - +1.8 28,122 + -2.8 28,122 + -1.8 28,123 - -0.6 28,123 - -0.0 28,274 + +0.1 28,275 - -1.0 28,275 - +2.1 28,275 - -0.5 28,275 - -0.3 28,275 - +0.1 28,275 - +0.1 28,294 + -0.1 28,294 + -0.2 28,294 + -1.8 28,294 + +0.0 28,294 + -1.0 28,294 + -1.0 28,295 - +0.5 28,300 - -0.3 28,306 + +1.1 28,306 + -0.5 28,307 - +2.7 28,307 - -0.1 28,307 - -0.5 28,320 + -1.5 28,320 + -0.2 28,320 + -0.4 28,321 - +0.8 28,325 + -2.2 28,325 + -0.2 28,325 + -1.2 28,325 + +0.9 28,326 - +2.0 28,326 - -0.7 28,326 - +0.2 28,327 + -0.1 28,327 + +2.2 28,328 - -0.8 28,328 - -0.7 28,328 - +0.4 28,328 - -0.3 28,328 - +0.3 28,328 - +0.7 28,372 + -0.3 28,829 + DDA3937_RS00125 0.31 +0.2
Or see this region's nucleotide sequence