Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21090

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,799,505	+		DDA3937_RS21085	0.50	-0.5
4,799,505	+		DDA3937_RS21085	0.50	-0.2
4,799,505	+		DDA3937_RS21085	0.50	+0.0
4,799,583	+		DDA3937_RS21085	0.57	-0.1
4,799,583	+		DDA3937_RS21085	0.57	-0.2
4,799,584	-		DDA3937_RS21085	0.57	+0.6
4,799,584	-		DDA3937_RS21085	0.57	+1.5
4,799,584	-		DDA3937_RS21085	0.57	+0.1
4,799,629	+		DDA3937_RS21085	0.60	+0.6
4,799,630	-		DDA3937_RS21085	0.61	+0.4
4,799,656	-		DDA3937_RS21085	0.63	+1.0
4,799,656	-		DDA3937_RS21085	0.63	-1.0
4,799,771	-		DDA3937_RS21085	0.72	+0.0
4,800,086	+				+0.7
4,800,087	-				-0.3
4,800,087	-				+0.5
4,800,087	-				+0.9
4,800,122	-				-0.7
4,800,252	-				-0.6
4,800,364	+				-0.1
4,800,364	+				-0.8
4,800,365	-				+1.0
4,800,365	-				+0.2
4,800,371	+				+1.0
4,800,371	+				-0.1
4,800,376	-				+0.1
4,800,403	+				-0.1
4,800,404	-				-0.7
4,800,404	-				+0.4
4,800,404	-				+0.0
4,800,456	+				-1.0
4,800,469	+				+1.2
4,800,487	+				-0.0
4,800,499	-				-0.2
4,800,624	+				+1.4
4,800,643	+		DDA3937_RS21090	0.11	-1.5
4,800,644	-		DDA3937_RS21090	0.12	-0.5
4,800,702	+		DDA3937_RS21090	0.16	+0.3
4,800,702	+		DDA3937_RS21090	0.16	+0.2
4,800,703	-		DDA3937_RS21090	0.16	-2.3
4,800,703	-		DDA3937_RS21090	0.16	-0.4
4,800,706	+		DDA3937_RS21090	0.16	-0.3
4,800,707	-		DDA3937_RS21090	0.17	+1.4
4,800,707	-		DDA3937_RS21090	0.17	+0.3
4,800,795	+		DDA3937_RS21090	0.24	-0.0
4,800,796	-		DDA3937_RS21090	0.24	+0.3
4,800,796	-		DDA3937_RS21090	0.24	-0.1
4,800,907	+		DDA3937_RS21090	0.32	+1.9
4,800,908	-		DDA3937_RS21090	0.33	-0.5
4,800,908	-		DDA3937_RS21090	0.33	-0.8
4,800,997	+		DDA3937_RS21090	0.40	-1.3
4,800,997	+		DDA3937_RS21090	0.40	+0.0
4,800,998	-		DDA3937_RS21090	0.40	-1.9
4,800,998	-		DDA3937_RS21090	0.40	+0.7
4,801,100	+		DDA3937_RS21090	0.48	-1.0
4,801,100	+		DDA3937_RS21090	0.48	-0.3
4,801,100	+		DDA3937_RS21090	0.48	-1.5
4,801,101	-		DDA3937_RS21090	0.48	-1.5
4,801,101	-		DDA3937_RS21090	0.48	-1.7
4,801,101	-		DDA3937_RS21090	0.48	+0.4
4,801,295	+		DDA3937_RS21090	0.63	+0.7
4,801,296	-		DDA3937_RS21090	0.63	-0.7
4,801,415	+		DDA3937_RS21090	0.73	+1.0
4,801,415	+		DDA3937_RS21090	0.73	-0.3
4,801,416	-		DDA3937_RS21090	0.73	-0.9
4,801,426	+		DDA3937_RS21090	0.74	-0.1
4,801,468	+		DDA3937_RS21090	0.77	-1.2
4,801,468	+		DDA3937_RS21090	0.77	+2.5
4,801,564	+		DDA3937_RS21090	0.85	-1.3
4,801,565	-		DDA3937_RS21090	0.85	-1.0
4,801,609	+		DDA3937_RS21090	0.88	-1.5
4,801,609	+		DDA3937_RS21090	0.88	-0.8
4,801,609	+		DDA3937_RS21090	0.88	+0.0
4,801,610	-		DDA3937_RS21090	0.88	+0.4
4,801,610	-		DDA3937_RS21090	0.88	+1.2
4,801,669	+				-1.5
4,801,669	+				-0.7
4,801,669	+				-1.5
4,801,669	+				-1.2
4,801,669	+				-0.2
4,801,669	+				+4.9
4,801,670	-				-1.1
4,801,670	-				-0.8
4,801,670	-				+0.3
4,801,724	+				-0.1
4,801,756	+				+0.3
4,801,757	-				-1.5
4,801,797	+				-0.5
4,801,797	+				+0.0
4,801,797	+				+0.5
4,801,797	+				-0.4
4,801,797	+				-0.0
4,801,797	+				-0.1
4,801,797	+				-0.4
4,801,797	+				-0.4
4,801,797	+				+0.5
4,801,797	+				-0.2
4,801,797	+				+0.1
4,801,798	-				-0.0
4,801,798	-				+0.2
4,801,798	-				-0.4
4,801,798	-				-0.5
4,801,798	-				-0.5
4,801,798	-				+1.0
4,801,798	-				+2.9
4,801,799	+				-0.9
4,801,799	+				-2.3
4,801,799	+				+0.8
4,801,799	+				-0.2
4,801,799	+				-2.2
4,801,799	+				-0.3
4,801,799	+				-1.1
4,801,799	+				-1.4
4,801,799	+				+0.6
4,801,799	+				+0.2
4,801,799	+				-1.2
4,801,799	+				+0.3
4,801,799	+				+0.0
4,801,799	+				-1.0
4,801,799	+				-0.0
4,801,799	+				-1.3
4,801,799	+				-0.8
4,801,799	+				+0.6
4,801,799	+				+0.5
4,801,799	+				+2.0
4,801,799	+				+0.8
4,801,799	+				-0.7
4,801,799	+				+0.9
4,801,799	+				-1.0
4,801,799	+				-0.1
4,801,799	+				-2.6
4,801,799	+				+0.2
4,801,800	-				-0.0
4,801,800	-				-1.5
4,801,800	-				-0.6
4,801,800	-				-1.7
4,801,800	-				-0.1
4,801,800	-				+0.3
4,801,800	-				-1.0
4,801,800	-				+3.6
4,801,800	-				-1.3
4,801,800	-				+1.0
4,801,800	-				-1.0
4,801,800	-				-1.4
4,801,800	-				-2.1
4,801,800	-				+0.3
4,801,800	-				-1.8
4,801,800	-				-0.0
4,801,800	-				-0.7
4,801,800	-				-1.8
4,801,800	-				+0.0
4,801,800	-				+0.4
4,801,800	-				-0.8
4,801,800	-				-2.3
4,801,800	-				-0.4
4,801,800	-				-0.7
4,801,800	-				-2.8
4,801,800	-				-0.0
4,801,800	-				+0.6
4,801,831	+				-1.5
4,801,835	+				-0.4
4,801,835	+				-1.0
4,801,888	-				-2.7
4,801,907	+				+0.2
4,801,907	+				-0.5
4,801,907	+				-0.6
4,801,971	+		DDA3937_RS21095	0.28	-1.5
4,802,075	-		DDA3937_RS21095	0.69	-2.1
4,802,227	-				-0.4
4,802,331	+				-0.7
4,802,332	-				+0.2
4,802,346	+				+1.5
4,802,346	+				-0.8
4,802,347	-				-0.4
4,802,347	-				-0.1
4,802,350	+				-0.4
4,802,350	+				+0.5
4,802,350	+				-2.8
4,802,351	-				-1.0
4,802,351	-				+1.4
4,802,351	-				+2.6
4,802,351	-				+1.4
4,802,394	+				-1.0
4,802,395	-				-0.6
4,802,395	-				-0.5
4,802,406	-				+0.0
4,802,406	-				-0.8
4,802,406	-				+0.8
4,802,406	-				+0.0
4,802,408	-				+0.0
4,802,408	-				-0.4
4,802,451	+				-0.1
4,802,451	+				-0.5
4,802,607	+				-1.0
4,802,630	+				-3.1
4,802,630	+				-0.7
4,802,631	-				-1.5
4,802,631	-				+0.1
4,802,658	+		DDA3937_RS21100	0.11	-0.5
4,802,703	+		DDA3937_RS21100	0.14	+0.1
4,802,703	+		DDA3937_RS21100	0.14	+0.8