Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21015

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,778,394	+		DDA3937_RS21005	0.72	+0.4
4,778,400	+		DDA3937_RS21005	0.73	+0.0
4,778,418	+		DDA3937_RS21005	0.76	-0.8
4,778,418	+		DDA3937_RS21005	0.76	-0.7
4,778,418	+		DDA3937_RS21005	0.76	-0.6
4,778,418	+		DDA3937_RS21005	0.76	+0.5
4,778,419	-		DDA3937_RS21005	0.76	+0.3
4,778,419	-		DDA3937_RS21005	0.76	-2.1
4,778,419	-		DDA3937_RS21005	0.76	+0.0
4,778,419	-		DDA3937_RS21005	0.76	+0.0
4,778,419	-		DDA3937_RS21005	0.76	-1.9
4,778,485	+		DDA3937_RS21005	0.85	+0.5
4,778,486	-		DDA3937_RS21005	0.85	-1.4
4,778,560	+				-0.3
4,778,560	+				+0.2
4,778,560	+				+0.8
4,778,561	-				+0.6
4,778,561	-				-1.9
4,778,561	-				-1.3
4,778,561	-				-0.4
4,778,563	+				+0.7
4,778,563	+				-1.5
4,778,563	+				-1.6
4,778,563	+				-0.7
4,778,564	-				-1.2
4,778,564	-				+0.0
4,778,564	-				+0.4
4,778,699	+		DDA3937_RS21010	0.16	-0.5
4,778,700	-		DDA3937_RS21010	0.17	-0.7
4,778,742	+		DDA3937_RS21010	0.23	-1.3
4,778,742	+				+0.6
4,778,742	+		DDA3937_RS21010	0.23	-0.0
4,778,743	-		DDA3937_RS21010	0.23	+1.2
4,778,743	-		DDA3937_RS21010	0.23	-0.5
4,778,827	+		DDA3937_RS21010	0.36	+0.1
4,778,827	+		DDA3937_RS21010	0.36	-0.7
4,778,827	+		DDA3937_RS21010	0.36	-0.1
4,778,827	+		DDA3937_RS21010	0.36	-2.0
4,778,828	-		DDA3937_RS21010	0.37	-0.5
4,778,828	-		DDA3937_RS21010	0.37	-1.0
4,778,828	-		DDA3937_RS21010	0.37	-1.2
4,778,830	+		DDA3937_RS21010	0.37	+4.6
4,778,830	+		DDA3937_RS21010	0.37	+0.2
4,778,830	+		DDA3937_RS21010	0.37	+0.3
4,778,830	+		DDA3937_RS21010	0.37	-0.5
4,778,831	-		DDA3937_RS21010	0.37	-0.3
4,778,831	-		DDA3937_RS21010	0.37	+0.1
4,778,831	-		DDA3937_RS21010	0.37	-1.5
4,778,831	-		DDA3937_RS21010	0.37	-0.7
4,778,831	-		DDA3937_RS21010	0.37	-1.0
4,778,831	-		DDA3937_RS21010	0.37	-0.8
4,778,873	+		DDA3937_RS21010	0.44	-1.2
4,779,007	-		DDA3937_RS21010	0.65	+1.0
4,779,118	-		DDA3937_RS21010	0.82	+0.3
4,779,118	-		DDA3937_RS21010	0.82	-0.1
4,779,229	-				-0.7
4,779,317	+				+1.0
4,779,344	+				-1.0
4,779,344	+				-0.7
4,779,344	+				-0.5
4,779,508	+				-2.2
4,779,509	-				-0.5
4,779,527	+				-0.7
4,779,528	-				+1.0
4,779,798	-		DDA3937_RS21015	0.13	-0.9
4,779,965	+		DDA3937_RS21015	0.18	-2.3
4,779,965	+		DDA3937_RS21015	0.18	-1.0
4,779,966	-		DDA3937_RS21015	0.18	-0.4
4,779,966	-		DDA3937_RS21015	0.18	+0.9
4,780,092	-		DDA3937_RS21015	0.21	-1.5
4,780,092	-		DDA3937_RS21015	0.21	-0.4
4,780,129	+		DDA3937_RS21015	0.22	+1.2
4,780,130	-		DDA3937_RS21015	0.22	+0.5
4,780,130	-		DDA3937_RS21015	0.22	+1.0
4,780,153	+		DDA3937_RS21015	0.23	-0.7
4,780,153	+		DDA3937_RS21015	0.23	-0.8
4,780,153	+		DDA3937_RS21015	0.23	-1.2
4,780,153	+		DDA3937_RS21015	0.23	-0.2
4,780,153	+		DDA3937_RS21015	0.23	-1.7
4,780,153	+		DDA3937_RS21015	0.23	-0.2
4,780,153	+		DDA3937_RS21015	0.23	+0.5
4,780,153	+		DDA3937_RS21015	0.23	-0.6
4,780,153	+		DDA3937_RS21015	0.23	+0.7
4,780,153	+		DDA3937_RS21015	0.23	-0.9
4,780,153	+		DDA3937_RS21015	0.23	-0.7
4,780,154	-		DDA3937_RS21015	0.23	-1.0
4,780,154	-		DDA3937_RS21015	0.23	-0.7
4,780,154	-		DDA3937_RS21015	0.23	-0.6
4,780,154	-		DDA3937_RS21015	0.23	-2.5
4,780,154	-		DDA3937_RS21015	0.23	-0.0
4,780,154	-		DDA3937_RS21015	0.23	-1.1
4,780,154	-		DDA3937_RS21015	0.23	+0.3
4,780,154	-		DDA3937_RS21015	0.23	+0.8
4,780,154	-		DDA3937_RS21015	0.23	-1.7
4,780,160	-		DDA3937_RS21015	0.23	+1.5
4,780,160	-		DDA3937_RS21015	0.23	-1.5
4,780,160	-		DDA3937_RS21015	0.23	-0.5
4,780,333	-		DDA3937_RS21015	0.28	+0.0
4,780,333	-		DDA3937_RS21015	0.28	+0.1
4,780,577	-		DDA3937_RS21015	0.35	-0.6
4,780,577	-		DDA3937_RS21015	0.35	-1.1
4,781,026	+		DDA3937_RS21015	0.47	-2.3
4,781,026	+		DDA3937_RS21015	0.47	+0.5
4,781,026	+		DDA3937_RS21015	0.47	+0.4
4,781,026	+		DDA3937_RS21015	0.47	-0.6
4,781,027	-		DDA3937_RS21015	0.47	-0.4
4,781,027	-		DDA3937_RS21015	0.47	-0.5
4,781,062	+		DDA3937_RS21015	0.48	-0.7
4,781,062	+		DDA3937_RS21015	0.48	+1.0
4,781,063	-		DDA3937_RS21015	0.48	-0.2
4,781,138	+		DDA3937_RS21015	0.50	-0.2
4,781,138	+		DDA3937_RS21015	0.50	+0.3
4,781,138	+		DDA3937_RS21015	0.50	+0.6
4,781,138	+		DDA3937_RS21015	0.50	-0.9
4,781,138	+		DDA3937_RS21015	0.50	-0.5
4,781,139	-		DDA3937_RS21015	0.50	+0.4
4,781,139	-		DDA3937_RS21015	0.50	+0.3
4,781,217	-		DDA3937_RS21015	0.52	-1.5
4,781,251	+		DDA3937_RS21015	0.53	-0.3
4,781,305	+		DDA3937_RS21015	0.55	+0.0
4,781,305	+		DDA3937_RS21015	0.55	-0.3
4,781,306	-		DDA3937_RS21015	0.55	-1.0
4,781,306	-				+1.2
4,781,306	-		DDA3937_RS21015	0.55	-0.1
4,781,306	-		DDA3937_RS21015	0.55	+1.4
4,781,397	+		DDA3937_RS21015	0.57	+0.7
4,781,413	+		DDA3937_RS21015	0.58	-0.7
4,781,523	-		DDA3937_RS21015	0.61	-0.7
4,781,541	-		DDA3937_RS21015	0.61	-1.5
4,782,040	+		DDA3937_RS21015	0.75	+1.8
4,782,041	-		DDA3937_RS21015	0.75	-1.0
4,782,185	-		DDA3937_RS21015	0.79	-0.7
4,782,185	-		DDA3937_RS21015	0.79	-1.6
4,782,244	+		DDA3937_RS21015	0.81	+0.0
4,782,244	+		DDA3937_RS21015	0.81	-1.2
4,782,244	+		DDA3937_RS21015	0.81	-0.1
4,782,244	+		DDA3937_RS21015	0.81	+0.4
4,782,244	+		DDA3937_RS21015	0.81	-0.3
4,782,245	-		DDA3937_RS21015	0.81	-1.4
4,782,245	-		DDA3937_RS21015	0.81	-0.2
4,782,245	-		DDA3937_RS21015	0.81	-1.4
4,782,298	+		DDA3937_RS21015	0.83	-0.9
4,782,298	+		DDA3937_RS21015	0.83	-0.7
4,782,299	-		DDA3937_RS21015	0.83	-0.7
4,782,299	-		DDA3937_RS21015	0.83	-0.1
4,782,308	+		DDA3937_RS21015	0.83	-0.4
4,782,308	+		DDA3937_RS21015	0.83	-0.4
4,782,308	+		DDA3937_RS21015	0.83	-1.4
4,782,308	+		DDA3937_RS21015	0.83	-0.4
4,782,308	+		DDA3937_RS21015	0.83	+0.0
4,782,308	+		DDA3937_RS21015	0.83	-1.2
4,782,309	-		DDA3937_RS21015	0.83	+0.0
4,782,309	-		DDA3937_RS21015	0.83	-0.5
4,782,310	+		DDA3937_RS21015	0.83	-0.3
4,782,311	-		DDA3937_RS21015	0.83	+0.9
4,782,311	-		DDA3937_RS21015	0.83	-1.1
4,782,357	-		DDA3937_RS21015	0.84	-0.7
4,782,535	+		DDA3937_RS21015	0.89	-0.4
4,782,536	-		DDA3937_RS21015	0.89	+0.2
4,782,843	+				+0.0
4,782,843	+				-0.7
4,782,930	-				-1.2
4,782,930	-				-0.7
4,782,944	+				+0.3
4,782,944	+				-1.5
4,782,945	-				-0.0
4,782,945	-				-0.4
4,782,945	-				-0.5
4,782,945	-				+0.6
4,782,967	+				+3.1
4,782,967	+				-1.0
4,782,967	+				-0.7
4,782,967	+				+0.6
4,782,968	-				-0.4
4,782,968	-				+0.2
4,782,992	-				-0.3
4,783,002	+				-0.4
4,783,002	+				-0.4
4,783,002	+				-1.3
4,783,002	+				-0.1
4,783,002	+				-1.0
4,783,002	+				-1.9
4,783,002	+				-1.1
4,783,002	+				-0.2
4,783,002	+				-0.5
4,783,002	+				+0.5
4,783,002	+				+0.6
4,783,002	+				-0.7
4,783,002	+				-1.6
4,783,002	+				-0.2
4,783,002	+				+0.2
4,783,002	+				-1.0
4,783,003	-				+0.5
4,783,003	-				-0.7
4,783,003	-				+0.0
4,783,003	-				+0.2
4,783,003	-				-0.3
4,783,003	-				+0.5
4,783,003	-				-0.7
4,783,003	-				-0.5
4,783,003	-				+0.4
4,783,003	-				-1.1
4,783,007	+				-0.1
4,783,008	-				+1.1
4,783,008	-				-0.4
4,783,008	-				+0.8
4,783,023	+				-0.2
4,783,036	+				-1.7
4,783,093	+				-1.1
4,783,093	+				-0.6
4,783,093	+				-0.9
4,783,094	-				-1.0
4,783,094	-				-0.4
4,783,094	-				-1.0
4,783,094	-				+0.4
4,783,094	-				-0.4
4,783,094	-				+0.9
4,783,094	-				+0.0
4,783,094	-				-1.5
4,783,132	+				+1.2
4,783,133	-				-0.1
4,783,133	-				-2.2
4,783,140	+				-0.0
4,783,140	+				-0.4
4,783,141	-				+0.4
4,783,192	-		DDA3937_RS21020	0.12	-0.3
4,783,229	+		DDA3937_RS21020	0.17	-0.4
4,783,230	-		DDA3937_RS21020	0.17	+0.2
4,783,319	+		DDA3937_RS21020	0.28	-0.2
4,783,320	-		DDA3937_RS21020	0.28	-1.0
4,783,443	-		DDA3937_RS21020	0.43	-2.3
4,783,444	+		DDA3937_RS21020	0.43	-1.3
4,783,444	+		DDA3937_RS21020	0.43	-0.7
4,783,444	+		DDA3937_RS21020	0.43	-0.5
4,783,445	-		DDA3937_RS21020	0.43	-0.7
4,783,445	-		DDA3937_RS21020	0.43	+0.0
4,783,445	-		DDA3937_RS21020	0.43	-0.6
4,783,445	-		DDA3937_RS21020	0.43	-0.4
4,783,445	-		DDA3937_RS21020	0.43	-1.7
4,783,508	+		DDA3937_RS21020	0.51	+1.4
4,783,508	+		DDA3937_RS21020	0.51	-0.7
4,783,508	+		DDA3937_RS21020	0.51	+1.4
4,783,508	+		DDA3937_RS21020	0.51	-0.3
4,783,509	-		DDA3937_RS21020	0.51	-0.7
4,783,556	+		DDA3937_RS21020	0.57	+1.3
4,783,557	-		DDA3937_RS21020	0.57	-0.3
4,783,557	-		DDA3937_RS21020	0.57	-0.3
4,783,656	+		DDA3937_RS21020	0.69	+0.2
4,783,656	+		DDA3937_RS21020	0.69	+0.0
4,783,656	+		DDA3937_RS21020	0.69	+1.2
4,783,657	-		DDA3937_RS21020	0.69	-2.8
4,783,712	+		DDA3937_RS21020	0.76	+0.0
4,783,712	+		DDA3937_RS21020	0.76	-1.4
4,783,712	+		DDA3937_RS21020	0.76	+0.3
4,783,712	+		DDA3937_RS21020	0.76	-1.2
4,783,713	-		DDA3937_RS21020	0.76	-0.2
4,783,713	-		DDA3937_RS21020	0.76	-0.8
4,783,713	-		DDA3937_RS21020	0.76	-1.2
4,783,878	+				+0.1