Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20755

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20750 and DDA3937_RS20755 are separated by 5 nucleotidesDDA3937_RS20755 and DDA3937_RS20760 overlap by 4 nucleotides DDA3937_RS20750: DDA3937_RS20750 - acyl--CoA ligase, at 4,715,653 to 4,717,236 _RS20750 DDA3937_RS20755: DDA3937_RS20755 - acyl carrier protein, at 4,717,242 to 4,717,550 _RS20755 DDA3937_RS20760: DDA3937_RS20760 - AMP-binding protein, at 4,717,547 to 4,719,091 _RS20760 Position (kb) 4717 4718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4716.248 kb on - strand, within DDA3937_RS20750at 4716.304 kb on + strand, within DDA3937_RS20750at 4716.313 kb on + strand, within DDA3937_RS20750at 4716.314 kb on - strand, within DDA3937_RS20750at 4716.314 kb on - strand, within DDA3937_RS20750at 4716.345 kb on + strand, within DDA3937_RS20750at 4716.345 kb on + strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.356 kb on + strand, within DDA3937_RS20750at 4716.357 kb on - strand, within DDA3937_RS20750at 4716.419 kb on + strand, within DDA3937_RS20750at 4716.474 kb on + strand, within DDA3937_RS20750at 4716.474 kb on + strand, within DDA3937_RS20750at 4716.546 kb on + strand, within DDA3937_RS20750at 4716.546 kb on + strand, within DDA3937_RS20750at 4716.547 kb on - strand, within DDA3937_RS20750at 4716.572 kb on - strand, within DDA3937_RS20750at 4716.572 kb on - strand, within DDA3937_RS20750at 4716.580 kb on + strand, within DDA3937_RS20750at 4716.581 kb on - strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.611 kb on - strand, within DDA3937_RS20750at 4716.625 kb on + strand, within DDA3937_RS20750at 4716.626 kb on - strand, within DDA3937_RS20750at 4716.832 kb on + strand, within DDA3937_RS20750at 4716.832 kb on + strand, within DDA3937_RS20750at 4716.833 kb on - strand, within DDA3937_RS20750at 4716.874 kb on + strand, within DDA3937_RS20750at 4716.875 kb on - strand, within DDA3937_RS20750at 4716.875 kb on - strand, within DDA3937_RS20750at 4717.006 kb on + strand, within DDA3937_RS20750at 4717.007 kb on - strand, within DDA3937_RS20750at 4717.124 kb on + strandat 4717.125 kb on - strandat 4717.226 kb on + strandat 4717.226 kb on + strandat 4717.227 kb on - strandat 4717.227 kb on - strandat 4717.227 kb on - strandat 4717.227 kb on - strandat 4717.234 kb on + strandat 4717.235 kb on - strandat 4717.235 kb on - strandat 4717.235 kb on - strandat 4717.235 kb on - strandat 4717.260 kb on + strandat 4717.294 kb on - strand, within DDA3937_RS20755at 4717.296 kb on + strand, within DDA3937_RS20755at 4717.384 kb on + strand, within DDA3937_RS20755at 4717.422 kb on + strand, within DDA3937_RS20755at 4717.422 kb on + strand, within DDA3937_RS20755at 4717.422 kb on + strand, within DDA3937_RS20755at 4717.423 kb on - strand, within DDA3937_RS20755at 4717.423 kb on - strand, within DDA3937_RS20755at 4717.599 kb on + strandat 4717.600 kb on - strandat 4717.600 kb on - strandat 4717.600 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.641 kb on - strandat 4717.653 kb on - strandat 4717.683 kb on + strandat 4717.684 kb on - strandat 4717.684 kb on - strandat 4717.696 kb on + strandat 4717.696 kb on + strandat 4717.696 kb on + strandat 4717.696 kb on + strandat 4717.736 kb on + strand, within DDA3937_RS20760at 4717.737 kb on - strand, within DDA3937_RS20760at 4717.872 kb on + strand, within DDA3937_RS20760at 4717.872 kb on + strand, within DDA3937_RS20760at 4717.873 kb on - strand, within DDA3937_RS20760at 4717.873 kb on - strand, within DDA3937_RS20760at 4717.938 kb on + strand, within DDA3937_RS20760at 4717.938 kb on + strand, within DDA3937_RS20760at 4717.938 kb on + strand, within DDA3937_RS20760at 4717.938 kb on + strand, within DDA3937_RS20760at 4717.939 kb on - strand, within DDA3937_RS20760at 4717.939 kb on - strand, within DDA3937_RS20760at 4717.939 kb on - strand, within DDA3937_RS20760at 4717.939 kb on - strand, within DDA3937_RS20760at 4717.945 kb on + strand, within DDA3937_RS20760at 4717.945 kb on + strand, within DDA3937_RS20760at 4717.946 kb on - strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.024 kb on + strand, within DDA3937_RS20760at 4718.025 kb on - strand, within DDA3937_RS20760at 4718.025 kb on - strand, within DDA3937_RS20760at 4718.025 kb on - strand, within DDA3937_RS20760at 4718.025 kb on - strand, within DDA3937_RS20760at 4718.025 kb on - strandat 4718.025 kb on - strand, within DDA3937_RS20760at 4718.027 kb on - strand, within DDA3937_RS20760at 4718.027 kb on - strand, within DDA3937_RS20760at 4718.100 kb on + strand, within DDA3937_RS20760at 4718.100 kb on + strand, within DDA3937_RS20760at 4718.100 kb on + strand, within DDA3937_RS20760at 4718.101 kb on - strand, within DDA3937_RS20760at 4718.101 kb on - strand, within DDA3937_RS20760at 4718.118 kb on + strand, within DDA3937_RS20760at 4718.118 kb on + strand, within DDA3937_RS20760at 4718.119 kb on - strand, within DDA3937_RS20760at 4718.127 kb on + strand, within DDA3937_RS20760at 4718.127 kb on + strand, within DDA3937_RS20760at 4718.128 kb on - strand, within DDA3937_RS20760at 4718.128 kb on - strand, within DDA3937_RS20760at 4718.128 kb on - strand, within DDA3937_RS20760at 4718.134 kb on + strand, within DDA3937_RS20760at 4718.135 kb on - strand, within DDA3937_RS20760at 4718.139 kb on + strand, within DDA3937_RS20760at 4718.149 kb on + strand, within DDA3937_RS20760at 4718.177 kb on + strand, within DDA3937_RS20760at 4718.177 kb on + strand, within DDA3937_RS20760at 4718.178 kb on - strand, within DDA3937_RS20760at 4718.178 kb on - strand, within DDA3937_RS20760at 4718.198 kb on + strand, within DDA3937_RS20760at 4718.198 kb on + strand, within DDA3937_RS20760at 4718.199 kb on - strand, within DDA3937_RS20760at 4718.199 kb on - strand, within DDA3937_RS20760at 4718.201 kb on + strand, within DDA3937_RS20760at 4718.202 kb on - strand, within DDA3937_RS20760at 4718.202 kb on - strand, within DDA3937_RS20760at 4718.220 kb on + strand, within DDA3937_RS20760at 4718.220 kb on + strand, within DDA3937_RS20760at 4718.221 kb on - strand, within DDA3937_RS20760at 4718.221 kb on - strand, within DDA3937_RS20760at 4718.321 kb on + strand, within DDA3937_RS20760at 4718.321 kb on + strand, within DDA3937_RS20760at 4718.322 kb on - strand, within DDA3937_RS20760at 4718.341 kb on + strand, within DDA3937_RS20760at 4718.342 kb on - strand, within DDA3937_RS20760at 4718.449 kb on + strand, within DDA3937_RS20760at 4718.452 kb on + strand, within DDA3937_RS20760at 4718.452 kb on + strand, within DDA3937_RS20760at 4718.452 kb on + strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.453 kb on - strand, within DDA3937_RS20760at 4718.456 kb on + strand, within DDA3937_RS20760at 4718.456 kb on + strand, within DDA3937_RS20760at 4718.544 kb on - strand, within DDA3937_RS20760

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,716,248 - DDA3937_RS20750 0.38 -0.1
4,716,304 + DDA3937_RS20750 0.41 -0.8
4,716,313 + DDA3937_RS20750 0.42 -0.2
4,716,314 - DDA3937_RS20750 0.42 -1.2
4,716,314 - DDA3937_RS20750 0.42 +1.0
4,716,345 + DDA3937_RS20750 0.44 +0.7
4,716,345 + DDA3937_RS20750 0.44 +0.1
4,716,346 - DDA3937_RS20750 0.44 -0.3
4,716,346 - DDA3937_RS20750 0.44 -0.7
4,716,346 - DDA3937_RS20750 0.44 +0.5
4,716,346 - DDA3937_RS20750 0.44 +0.3
4,716,356 + DDA3937_RS20750 0.44 -1.3
4,716,357 - DDA3937_RS20750 0.44 +0.5
4,716,419 + DDA3937_RS20750 0.48 -0.7
4,716,474 + DDA3937_RS20750 0.52 +0.9
4,716,474 + DDA3937_RS20750 0.52 +1.0
4,716,546 + DDA3937_RS20750 0.56 +1.4
4,716,546 + DDA3937_RS20750 0.56 +0.4
4,716,547 - DDA3937_RS20750 0.56 +0.3
4,716,572 - DDA3937_RS20750 0.58 -0.8
4,716,572 - DDA3937_RS20750 0.58 +0.2
4,716,580 + DDA3937_RS20750 0.59 -0.3
4,716,581 - DDA3937_RS20750 0.59 +0.1
4,716,610 + DDA3937_RS20750 0.60 -1.0
4,716,610 + DDA3937_RS20750 0.60 +0.8
4,716,610 + DDA3937_RS20750 0.60 -2.5
4,716,610 + DDA3937_RS20750 0.60 +0.3
4,716,611 - DDA3937_RS20750 0.60 -0.2
4,716,625 + DDA3937_RS20750 0.61 -1.4
4,716,626 - DDA3937_RS20750 0.61 -1.0
4,716,832 + DDA3937_RS20750 0.74 +1.0
4,716,832 + DDA3937_RS20750 0.74 +0.2
4,716,833 - DDA3937_RS20750 0.74 +1.9
4,716,874 + DDA3937_RS20750 0.77 +0.2
4,716,875 - DDA3937_RS20750 0.77 +0.1
4,716,875 - DDA3937_RS20750 0.77 +0.9
4,717,006 + DDA3937_RS20750 0.85 -0.3
4,717,007 - DDA3937_RS20750 0.85 -1.5
4,717,124 + -1.4
4,717,125 - -0.2
4,717,226 + +0.5
4,717,226 + -2.9
4,717,227 - +1.7
4,717,227 - +0.3
4,717,227 - -0.0
4,717,227 - +1.6
4,717,234 + -0.3
4,717,235 - +0.0
4,717,235 - -1.0
4,717,235 - -0.7
4,717,235 - -1.0
4,717,260 + -0.1
4,717,294 - DDA3937_RS20755 0.17 +0.7
4,717,296 + DDA3937_RS20755 0.17 -0.3
4,717,384 + DDA3937_RS20755 0.46 +1.1
4,717,422 + DDA3937_RS20755 0.58 -0.1
4,717,422 + DDA3937_RS20755 0.58 -0.3
4,717,422 + DDA3937_RS20755 0.58 +2.0
4,717,423 - DDA3937_RS20755 0.59 -0.0
4,717,423 - DDA3937_RS20755 0.59 -0.7
4,717,599 + +0.7
4,717,600 - -1.8
4,717,600 - +0.0
4,717,600 - -0.2
4,717,641 - -0.5
4,717,641 - -0.1
4,717,641 - +0.2
4,717,641 - +1.6
4,717,641 - +0.2
4,717,641 - +0.2
4,717,641 - -0.4
4,717,641 - +0.3
4,717,641 - -1.0
4,717,641 - -0.5
4,717,641 - -0.3
4,717,641 - +0.5
4,717,653 - +0.0
4,717,683 + -0.7
4,717,684 - +0.8
4,717,684 - +0.6
4,717,696 + +3.2
4,717,696 + +0.3
4,717,696 + +1.9
4,717,696 + -0.4
4,717,736 + DDA3937_RS20760 0.12 -0.9
4,717,737 - DDA3937_RS20760 0.12 -1.5
4,717,872 + DDA3937_RS20760 0.21 -0.2
4,717,872 + DDA3937_RS20760 0.21 -2.6
4,717,873 - DDA3937_RS20760 0.21 +0.6
4,717,873 - DDA3937_RS20760 0.21 +0.0
4,717,938 + DDA3937_RS20760 0.25 +1.0
4,717,938 + DDA3937_RS20760 0.25 +0.1
4,717,938 + DDA3937_RS20760 0.25 -0.5
4,717,938 + DDA3937_RS20760 0.25 -0.7
4,717,939 - DDA3937_RS20760 0.25 +0.7
4,717,939 - DDA3937_RS20760 0.25 -0.9
4,717,939 - DDA3937_RS20760 0.25 +1.6
4,717,939 - DDA3937_RS20760 0.25 -0.1
4,717,945 + DDA3937_RS20760 0.26 +2.6
4,717,945 + DDA3937_RS20760 0.26 +0.6
4,717,946 - DDA3937_RS20760 0.26 -0.0
4,718,024 + DDA3937_RS20760 0.31 -0.9
4,718,024 + DDA3937_RS20760 0.31 +0.2
4,718,024 + DDA3937_RS20760 0.31 -0.6
4,718,024 + DDA3937_RS20760 0.31 +0.0
4,718,024 + DDA3937_RS20760 0.31 +1.4
4,718,024 + DDA3937_RS20760 0.31 -0.2
4,718,024 + DDA3937_RS20760 0.31 -0.8
4,718,024 + DDA3937_RS20760 0.31 +0.3
4,718,024 + DDA3937_RS20760 0.31 +0.2
4,718,025 - DDA3937_RS20760 0.31 +0.3
4,718,025 - DDA3937_RS20760 0.31 +0.2
4,718,025 - DDA3937_RS20760 0.31 -0.1
4,718,025 - DDA3937_RS20760 0.31 -0.1
4,718,025 - +0.0
4,718,025 - DDA3937_RS20760 0.31 -0.9
4,718,027 - DDA3937_RS20760 0.31 -0.7
4,718,027 - DDA3937_RS20760 0.31 +2.0
4,718,100 + DDA3937_RS20760 0.36 -0.6
4,718,100 + DDA3937_RS20760 0.36 -2.7
4,718,100 + DDA3937_RS20760 0.36 +0.4
4,718,101 - DDA3937_RS20760 0.36 -0.8
4,718,101 - DDA3937_RS20760 0.36 -0.4
4,718,118 + DDA3937_RS20760 0.37 -1.8
4,718,118 + DDA3937_RS20760 0.37 +0.4
4,718,119 - DDA3937_RS20760 0.37 -1.6
4,718,127 + DDA3937_RS20760 0.38 -1.1
4,718,127 + DDA3937_RS20760 0.38 -0.1
4,718,128 - DDA3937_RS20760 0.38 -0.4
4,718,128 - DDA3937_RS20760 0.38 -1.0
4,718,128 - DDA3937_RS20760 0.38 +0.1
4,718,134 + DDA3937_RS20760 0.38 +0.7
4,718,135 - DDA3937_RS20760 0.38 +0.3
4,718,139 + DDA3937_RS20760 0.38 +0.6
4,718,149 + DDA3937_RS20760 0.39 +0.5
4,718,177 + DDA3937_RS20760 0.41 -2.3
4,718,177 + DDA3937_RS20760 0.41 -0.7
4,718,178 - DDA3937_RS20760 0.41 +0.6
4,718,178 - DDA3937_RS20760 0.41 +0.7
4,718,198 + DDA3937_RS20760 0.42 -2.0
4,718,198 + DDA3937_RS20760 0.42 -1.8
4,718,199 - DDA3937_RS20760 0.42 +1.8
4,718,199 - DDA3937_RS20760 0.42 -0.5
4,718,201 + DDA3937_RS20760 0.42 -1.5
4,718,202 - DDA3937_RS20760 0.42 -1.5
4,718,202 - DDA3937_RS20760 0.42 +0.2
4,718,220 + DDA3937_RS20760 0.44 +1.6
4,718,220 + DDA3937_RS20760 0.44 +0.1
4,718,221 - DDA3937_RS20760 0.44 +1.7
4,718,221 - DDA3937_RS20760 0.44 -0.5
4,718,321 + DDA3937_RS20760 0.50 -0.6
4,718,321 + DDA3937_RS20760 0.50 +0.1
4,718,322 - DDA3937_RS20760 0.50 +0.0
4,718,341 + DDA3937_RS20760 0.51 +0.0
4,718,342 - DDA3937_RS20760 0.51 -0.2
4,718,449 + DDA3937_RS20760 0.58 -0.6
4,718,452 + DDA3937_RS20760 0.59 -0.4
4,718,452 + DDA3937_RS20760 0.59 -0.1
4,718,452 + DDA3937_RS20760 0.59 -0.4
4,718,453 - DDA3937_RS20760 0.59 -0.8
4,718,453 - DDA3937_RS20760 0.59 +0.1
4,718,453 - DDA3937_RS20760 0.59 +0.5
4,718,453 - DDA3937_RS20760 0.59 -0.3
4,718,453 - DDA3937_RS20760 0.59 -1.4
4,718,453 - DDA3937_RS20760 0.59 +0.3
4,718,453 - DDA3937_RS20760 0.59 -0.5
4,718,453 - DDA3937_RS20760 0.59 +0.6
4,718,456 + DDA3937_RS20760 0.59 +0.4
4,718,456 + DDA3937_RS20760 0.59 +1.3
4,718,544 - DDA3937_RS20760 0.65 +0.5

Or see this region's nucleotide sequence