Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20160

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,594,226	+		DDA3937_RS20155	0.60	-0.6
4,594,226	+		DDA3937_RS20155	0.60	-2.1
4,594,226	+		DDA3937_RS20155	0.60	-2.1
4,594,226	+		DDA3937_RS20155	0.60	-1.1
4,594,226	+		DDA3937_RS20155	0.60	-1.2
4,594,226	+		DDA3937_RS20155	0.60	-1.9
4,594,226	+		DDA3937_RS20155	0.60	-0.7
4,594,227	-		DDA3937_RS20155	0.60	-1.3
4,594,227	-		DDA3937_RS20155	0.60	-1.0
4,594,230	-		DDA3937_RS20155	0.60	-1.6
4,594,611	+		DDA3937_RS20155	0.81	-1.9
4,594,612	-		DDA3937_RS20155	0.81	-0.8
4,594,612	-		DDA3937_RS20155	0.81	+0.0
4,594,649	+		DDA3937_RS20155	0.83	+0.1
4,594,649	+		DDA3937_RS20155	0.83	+0.1
4,594,649	+		DDA3937_RS20155	0.83	-0.3
4,594,649	+		DDA3937_RS20155	0.83	-0.1
4,594,649	+		DDA3937_RS20155	0.83	-1.7
4,594,650	-		DDA3937_RS20155	0.83	-0.2
4,594,650	-		DDA3937_RS20155	0.83	-1.4
4,594,650	-		DDA3937_RS20155	0.83	-1.3
4,594,650	-		DDA3937_RS20155	0.83	-0.4
4,594,650	-		DDA3937_RS20155	0.83	-2.3
4,594,692	-		DDA3937_RS20155	0.85	-1.0
4,594,692	-		DDA3937_RS20155	0.85	-2.8
4,594,692	-				+0.6
4,594,692	-		DDA3937_RS20155	0.85	-0.7
4,594,698	+		DDA3937_RS20155	0.86	-1.4
4,594,698	+				+1.6
4,594,699	-		DDA3937_RS20155	0.86	-1.2
4,594,699	-		DDA3937_RS20155	0.86	-0.3
4,594,740	+		DDA3937_RS20155	0.88	-0.8
4,594,743	+		DDA3937_RS20155	0.88	-1.2
4,594,743	+		DDA3937_RS20155	0.88	-0.4
4,594,744	-		DDA3937_RS20155	0.88	+0.0
4,594,825	+				-2.7
4,594,923	+				-0.4
4,594,926	+				-1.6
4,594,926	+				+0.7
4,594,926	+				-1.1
4,594,927	-				-0.9
4,594,927	-				-2.0
4,594,927	-				-1.9
4,594,955	+				-0.7
4,594,955	+				-1.0
4,594,955	+				-0.3
4,594,955	+				+0.6
4,594,956	-				-0.6
4,594,956	-				-2.7
4,594,959	+				-1.8
4,594,959	+				-1.3
4,594,959	+				-1.0
4,594,959	+				+0.4
4,594,959	+				-1.0
4,594,959	+				-3.0
4,594,959	+				+0.6
4,594,959	+				-1.0
4,594,960	-				-1.7
4,594,960	-				-1.7
4,594,960	-				-0.5
4,594,960	-				+0.0
4,594,965	+				-1.6
4,594,965	+				-0.7
4,594,965	+				-1.2
4,594,965	+				-3.4
4,594,965	+				-1.0
4,594,975	-				-0.5
4,594,985	-				-1.2
4,595,114	+				+1.4
4,595,114	+				+0.1
4,595,115	-				+1.0
4,595,226	+		DDA3937_RS20160	0.20	-1.1
4,595,309	-		DDA3937_RS20160	0.29	-0.3
4,595,309	-		DDA3937_RS20160	0.29	+1.4
4,595,309	-		DDA3937_RS20160	0.29	+0.5
4,595,360	+		DDA3937_RS20160	0.35	-1.4
4,595,397	+		DDA3937_RS20160	0.39	-0.8
4,595,398	-		DDA3937_RS20160	0.39	-0.2
4,595,398	-		DDA3937_RS20160	0.39	-2.1
4,595,398	-		DDA3937_RS20160	0.39	+1.0
4,595,475	+		DDA3937_RS20160	0.47	-1.2
4,595,475	+		DDA3937_RS20160	0.47	-2.4
4,595,475	+		DDA3937_RS20160	0.47	-3.1
4,595,475	+		DDA3937_RS20160	0.47	-2.2
4,595,475	+		DDA3937_RS20160	0.47	-0.3
4,595,475	+		DDA3937_RS20160	0.47	-2.2
4,595,475	+		DDA3937_RS20160	0.47	-1.1
4,595,476	-		DDA3937_RS20160	0.47	+0.0
4,595,476	-		DDA3937_RS20160	0.47	-1.5
4,595,476	-		DDA3937_RS20160	0.47	-2.2
4,595,476	-		DDA3937_RS20160	0.47	-1.7
4,595,476	-		DDA3937_RS20160	0.47	-1.0
4,595,480	-		DDA3937_RS20160	0.48	+0.1
4,595,491	+		DDA3937_RS20160	0.49	-1.4
4,595,510	-		DDA3937_RS20160	0.51	-0.6
4,595,510	-		DDA3937_RS20160	0.51	-0.8
4,595,580	+		DDA3937_RS20160	0.58	-2.1
4,595,580	+		DDA3937_RS20160	0.58	+0.0
4,595,580	+		DDA3937_RS20160	0.58	-0.8
4,595,581	-		DDA3937_RS20160	0.58	+0.0
4,595,621	-		DDA3937_RS20160	0.63	-1.2
4,595,622	+		DDA3937_RS20160	0.63	+0.9
4,595,623	-		DDA3937_RS20160	0.63	+0.6
4,595,651	+		DDA3937_RS20160	0.66	-0.8
4,595,651	+		DDA3937_RS20160	0.66	-0.2
4,595,651	+		DDA3937_RS20160	0.66	+0.0
4,595,651	+		DDA3937_RS20160	0.66	-1.2
4,595,651	+		DDA3937_RS20160	0.66	-1.5
4,595,651	+		DDA3937_RS20160	0.66	-1.2
4,595,651	+		DDA3937_RS20160	0.66	-0.1
4,595,652	-		DDA3937_RS20160	0.66	+0.1
4,595,652	-		DDA3937_RS20160	0.66	+0.6
4,595,652	-		DDA3937_RS20160	0.66	-0.7
4,595,652	-		DDA3937_RS20160	0.66	-0.9
4,595,652	-		DDA3937_RS20160	0.66	+0.8
4,595,652	-		DDA3937_RS20160	0.66	+0.3
4,595,652	-		DDA3937_RS20160	0.66	-0.4
4,595,652	-		DDA3937_RS20160	0.66	-0.6
4,595,652	-		DDA3937_RS20160	0.66	-0.5
4,595,652	-		DDA3937_RS20160	0.66	-0.4
4,595,666	+		DDA3937_RS20160	0.68	-0.6
4,595,666	+		DDA3937_RS20160	0.68	-0.8
4,595,666	+		DDA3937_RS20160	0.68	-1.3
4,595,680	+		DDA3937_RS20160	0.69	+0.4
4,595,680	+		DDA3937_RS20160	0.69	-0.5
4,595,682	+		DDA3937_RS20160	0.69	-1.6
4,595,682	+		DDA3937_RS20160	0.69	-0.4
4,595,683	-		DDA3937_RS20160	0.69	+0.1
4,595,683	-		DDA3937_RS20160	0.69	+0.3
4,595,749	-		DDA3937_RS20160	0.77	-1.5
4,595,761	+		DDA3937_RS20160	0.78	-0.7
4,595,761	+		DDA3937_RS20160	0.78	-1.6
4,595,761	+		DDA3937_RS20160	0.78	-0.1
4,595,761	+		DDA3937_RS20160	0.78	-0.2
4,595,761	+		DDA3937_RS20160	0.78	-0.8
4,595,762	-		DDA3937_RS20160	0.78	-2.8
4,595,762	-		DDA3937_RS20160	0.78	-0.3
4,595,839	+		DDA3937_RS20160	0.86	-0.6
4,595,840	-		DDA3937_RS20160	0.86	-2.8
4,595,840	-		DDA3937_RS20160	0.86	-1.2
4,595,840	-		DDA3937_RS20160	0.86	-2.6
4,595,840	-		DDA3937_RS20160	0.86	-0.5
4,595,840	-		DDA3937_RS20160	0.86	+0.3
4,595,840	-		DDA3937_RS20160	0.86	-0.3
4,595,841	+		DDA3937_RS20160	0.87	-0.8
4,595,842	-		DDA3937_RS20160	0.87	-0.6
4,595,842	-		DDA3937_RS20160	0.87	+1.8
4,595,842	-		DDA3937_RS20160	0.87	-0.6
4,595,944	+				-1.0
4,595,944	+				-0.4
4,595,945	-				+1.3
4,595,945	-				+0.0
4,595,945	-				-1.3
4,595,945	-				-1.4
4,595,945	-				-1.6
4,595,946	+				-0.8
4,595,946	+				-2.0
4,595,946	+				-0.4
4,595,946	+				-0.4
4,595,946	+				+0.0
4,595,946	+				-1.3
4,595,946	+				-1.5
4,595,947	-				+0.7
4,595,947	-				-1.3
4,595,947	-				-0.7
4,595,947	-				+0.6
4,595,947	-				-0.4
4,595,947	-				-0.8
4,595,947	-				-0.8
4,595,947	-				-1.2
4,595,947	-				-0.1
4,595,947	-				-0.2
4,595,947	-				-0.4
4,595,999	+				-1.5
4,595,999	+				+0.0
4,596,000	-				+0.9
4,596,000	-				+0.1
4,596,000	-				+0.1
4,596,000	-				-0.5
4,596,000	-				-0.0
4,596,057	-		DDA3937_RS20165	0.26	-1.2
4,596,057	-		DDA3937_RS20165	0.26	-0.4
4,596,071	+		DDA3937_RS20165	0.31	+0.8
4,596,071	+		DDA3937_RS20165	0.31	-1.3
4,596,071	+		DDA3937_RS20165	0.31	-1.6
4,596,072	-		DDA3937_RS20165	0.32	+0.7
4,596,072	-		DDA3937_RS20165	0.32	-0.3
4,596,113	+		DDA3937_RS20165	0.48	+0.1
4,596,114	-		DDA3937_RS20165	0.48	-1.5
4,596,114	-		DDA3937_RS20165	0.48	+1.6
4,596,114	-		DDA3937_RS20165	0.48	-0.3
4,596,127	+		DDA3937_RS20165	0.53	+1.3
4,596,127	+		DDA3937_RS20165	0.53	-0.5
4,596,128	-		DDA3937_RS20165	0.53	-0.4
4,596,128	-		DDA3937_RS20165	0.53	-0.9
4,596,142	+		DDA3937_RS20165	0.59	-0.2
4,596,142	+		DDA3937_RS20165	0.59	-1.1
4,596,143	-		DDA3937_RS20165	0.59	-1.7
4,596,200	+		DDA3937_RS20165	0.81	-1.2
4,596,201	-		DDA3937_RS20165	0.82	-1.1
4,596,494	+		DDA3937_RS20170	0.14	+2.6
4,596,494	+		DDA3937_RS20170	0.14	-0.6
4,596,646	+		DDA3937_RS20170	0.23	-3.1
4,596,647	-		DDA3937_RS20170	0.23	-0.3
4,596,647	-		DDA3937_RS20170	0.23	-2.7
4,596,756	+		DDA3937_RS20170	0.30	-0.2
4,596,756	+		DDA3937_RS20170	0.30	-0.2
4,596,756	+		DDA3937_RS20170	0.30	-0.1
4,596,756	+		DDA3937_RS20170	0.30	-1.2
4,596,756	+		DDA3937_RS20170	0.30	-1.6
4,596,756	+		DDA3937_RS20170	0.30	-0.7
4,596,756	+		DDA3937_RS20170	0.30	-0.7
4,596,757	-		DDA3937_RS20170	0.30	+0.1
4,596,757	-		DDA3937_RS20170	0.30	-0.8
4,596,757	-		DDA3937_RS20170	0.30	-1.4
4,596,757	-		DDA3937_RS20170	0.30	-0.4
4,596,757	-		DDA3937_RS20170	0.30	-0.4
4,596,757	-		DDA3937_RS20170	0.30	-1.1
4,596,757	-		DDA3937_RS20170	0.30	+0.7
4,596,757	-		DDA3937_RS20170	0.30	-0.7
4,596,757	-		DDA3937_RS20170	0.30	+0.5
4,596,757	-		DDA3937_RS20170	0.30	-0.8
4,596,819	+		DDA3937_RS20170	0.34	-1.5
4,596,820	-		DDA3937_RS20170	0.34	-0.6
4,596,820	-		DDA3937_RS20170	0.34	-0.0
4,596,820	-		DDA3937_RS20170	0.34	-0.5
4,596,820	-		DDA3937_RS20170	0.34	-0.6
4,596,854	+		DDA3937_RS20170	0.36	-0.5
4,596,854	+		DDA3937_RS20170	0.36	-0.3
4,596,854	+		DDA3937_RS20170	0.36	-0.8
4,596,855	-		DDA3937_RS20170	0.36	-1.3
4,596,855	-		DDA3937_RS20170	0.36	-0.8
4,596,855	-		DDA3937_RS20170	0.36	-0.1
4,596,879	-		DDA3937_RS20170	0.37	-0.1