Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19410

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,412,616	+		DDA3937_RS19405	0.48	+0.1
4,412,634	+		DDA3937_RS19405	0.49	-0.4
4,412,635	-		DDA3937_RS19405	0.49	-1.7
4,412,693	-		DDA3937_RS19405	0.52	-0.7
4,412,700	+				-0.4
4,412,700	+		DDA3937_RS19405	0.52	-0.1
4,412,701	-		DDA3937_RS19405	0.52	-0.3
4,412,701	-		DDA3937_RS19405	0.52	+0.8
4,412,830	+		DDA3937_RS19405	0.59	+0.6
4,412,831	-		DDA3937_RS19405	0.59	-0.9
4,412,831	-		DDA3937_RS19405	0.59	-0.3
4,412,968	-		DDA3937_RS19405	0.67	+0.8
4,413,044	+		DDA3937_RS19405	0.71	-1.9
4,413,044	+		DDA3937_RS19405	0.71	-0.3
4,413,243	+		DDA3937_RS19405	0.82	-1.2
4,413,243	+		DDA3937_RS19405	0.82	-0.1
4,413,243	+		DDA3937_RS19405	0.82	-0.9
4,413,243	+		DDA3937_RS19405	0.82	+0.1
4,413,243	+		DDA3937_RS19405	0.82	-0.3
4,413,244	-		DDA3937_RS19405	0.82	+0.2
4,413,244	-		DDA3937_RS19405	0.82	-0.4
4,413,244	-		DDA3937_RS19405	0.82	-2.7
4,413,244	-		DDA3937_RS19405	0.82	+0.0
4,413,244	-		DDA3937_RS19405	0.82	-0.1
4,413,355	+		DDA3937_RS19405	0.88	-0.1
4,413,356	-		DDA3937_RS19405	0.89	-1.8
4,413,567	+				+1.2
4,413,567	+				+0.6
4,413,567	+				+0.6
4,413,567	+				+1.4
4,413,567	+				+0.3
4,413,567	+				-0.1
4,413,568	-				-2.1
4,413,568	-				-0.5
4,413,609	+				-1.0
4,413,632	+		DDA3937_RS19410	0.12	+0.0
4,413,632	+		DDA3937_RS19410	0.12	-0.0
4,413,632	+		DDA3937_RS19410	0.12	-0.0
4,413,632	+		DDA3937_RS19410	0.12	-0.2
4,413,632	+		DDA3937_RS19410	0.12	-0.2
4,413,633	-		DDA3937_RS19410	0.12	-1.6
4,413,633	-		DDA3937_RS19410	0.12	-0.9
4,413,633	-		DDA3937_RS19410	0.12	+0.1
4,413,661	-		DDA3937_RS19410	0.17	-0.2
4,413,725	+		DDA3937_RS19410	0.29	-0.7
4,413,725	+		DDA3937_RS19410	0.29	-0.3
4,413,725	+		DDA3937_RS19410	0.29	+0.6
4,413,726	-		DDA3937_RS19410	0.29	+2.4
4,413,726	-		DDA3937_RS19410	0.29	+0.8
4,413,726	-		DDA3937_RS19410	0.29	-1.0
4,413,726	-		DDA3937_RS19410	0.29	-0.6
4,413,726	-		DDA3937_RS19410	0.29	-0.1
4,413,726	-		DDA3937_RS19410	0.29	-1.1
4,413,742	-		DDA3937_RS19410	0.32	+0.3
4,413,807	+		DDA3937_RS19410	0.44	-1.3
4,413,900	+		DDA3937_RS19410	0.61	-0.4
4,413,900	+		DDA3937_RS19410	0.61	+0.0
4,413,900	+		DDA3937_RS19410	0.61	-0.2
4,413,900	+		DDA3937_RS19410	0.61	-0.3
4,413,900	+		DDA3937_RS19410	0.61	-0.3
4,413,900	+		DDA3937_RS19410	0.61	-0.5
4,413,900	+		DDA3937_RS19410	0.61	-3.0
4,413,900	+		DDA3937_RS19410	0.61	-0.4
4,413,900	+		DDA3937_RS19410	0.61	-0.2
4,413,900	+		DDA3937_RS19410	0.61	-0.5
4,413,901	-		DDA3937_RS19410	0.61	-0.7
4,413,901	-		DDA3937_RS19410	0.61	-0.1
4,413,901	-		DDA3937_RS19410	0.61	-0.4
4,413,901	-		DDA3937_RS19410	0.61	+0.0
4,413,901	-		DDA3937_RS19410	0.61	-1.6
4,413,901	-		DDA3937_RS19410	0.61	+1.2
4,413,904	+		DDA3937_RS19410	0.61	-0.0
4,413,904	+		DDA3937_RS19410	0.61	-0.8
4,413,905	-		DDA3937_RS19410	0.61	+0.0
4,413,905	-		DDA3937_RS19410	0.61	-0.7
4,413,906	+		DDA3937_RS19410	0.62	-0.3
4,413,907	-		DDA3937_RS19410	0.62	-2.1
4,413,907	-		DDA3937_RS19410	0.62	-0.3
4,413,968	-		DDA3937_RS19410	0.73	-0.2
4,413,987	+		DDA3937_RS19410	0.76	-0.1
4,413,988	-		DDA3937_RS19410	0.76	+0.9
4,413,997	-		DDA3937_RS19410	0.78	-0.3
4,414,040	+		DDA3937_RS19410	0.86	-0.5
4,414,040	+		DDA3937_RS19410	0.86	-2.2
4,414,040	+		DDA3937_RS19410	0.86	-0.7
4,414,041	-		DDA3937_RS19410	0.86	-0.7
4,414,041	-		DDA3937_RS19410	0.86	+0.1
4,414,043	+		DDA3937_RS19410	0.86	-1.6
4,414,043	+		DDA3937_RS19410	0.86	-0.7
4,414,043	+		DDA3937_RS19410	0.86	-0.7
4,414,043	+		DDA3937_RS19410	0.86	-0.3
4,414,044	-		DDA3937_RS19410	0.87	-0.4
4,414,044	-		DDA3937_RS19410	0.87	-0.5
4,414,044	-		DDA3937_RS19410	0.87	+0.4
4,414,044	-		DDA3937_RS19410	0.87	+0.1
4,414,052	-		DDA3937_RS19410	0.88	-0.0
4,414,052	-		DDA3937_RS19410	0.88	-0.9
4,414,144	+				+0.3
4,414,144	+				-0.2
4,414,144	+				+0.1
4,414,145	-				+0.1
4,414,145	-				+0.2
4,414,145	-				+0.3
4,414,145	-				-0.0
4,414,145	-				+0.3
4,414,148	+				+0.1
4,414,148	+				+0.3
4,414,176	+				-0.7
4,414,176	+				-0.4
4,414,176	+				-0.4
4,414,176	+				-2.6
4,414,177	-				-0.5
4,414,177	-				-1.6
4,414,177	-				-0.9
4,414,216	+				+0.2
4,414,216	+				-1.1
4,414,216	+				-1.9
4,414,221	+				-0.0
4,414,221	+				-0.8
4,414,222	-				-0.7
4,414,241	+				+0.1
4,414,488	+		DDA3937_RS19415	0.13	-2.8
4,414,599	-		DDA3937_RS19415	0.19	+0.4
4,414,707	-		DDA3937_RS19415	0.24	+1.2
4,414,824	+		DDA3937_RS19415	0.30	-0.9
4,414,832	+		DDA3937_RS19415	0.31	-3.0
4,414,840	+		DDA3937_RS19415	0.31	+0.2
4,414,840	+		DDA3937_RS19415	0.31	+1.4
4,414,840	+		DDA3937_RS19415	0.31	-0.6
4,414,840	+		DDA3937_RS19415	0.31	-1.4
4,414,841	-		DDA3937_RS19415	0.31	-2.2
4,414,841	-		DDA3937_RS19415	0.31	-0.3
4,414,923	-		DDA3937_RS19415	0.35	+0.6
4,414,923	-		DDA3937_RS19415	0.35	-2.0
4,414,923	-		DDA3937_RS19415	0.35	-0.8
4,414,932	+		DDA3937_RS19415	0.36	-0.2
4,414,932	+		DDA3937_RS19415	0.36	-1.6
4,414,932	+		DDA3937_RS19415	0.36	-1.6
4,414,932	+		DDA3937_RS19415	0.36	-0.5
4,414,932	+		DDA3937_RS19415	0.36	-0.6
4,414,933	-		DDA3937_RS19415	0.36	-2.3
4,414,933	-		DDA3937_RS19415	0.36	-0.9
4,414,933	-		DDA3937_RS19415	0.36	-1.2
4,414,933	-		DDA3937_RS19415	0.36	+0.6
4,414,986	+		DDA3937_RS19415	0.39	-2.6
4,414,986	+		DDA3937_RS19415	0.39	-1.0
4,414,987	-		DDA3937_RS19415	0.39	-1.3
4,414,987	-		DDA3937_RS19415	0.39	-1.2
4,414,987	-		DDA3937_RS19415	0.39	-1.4
4,415,025	+		DDA3937_RS19415	0.41	+0.2
4,415,025	+		DDA3937_RS19415	0.41	-0.2
4,415,025	+		DDA3937_RS19415	0.41	-0.4
4,415,025	+		DDA3937_RS19415	0.41	-0.3
4,415,025	+		DDA3937_RS19415	0.41	-2.5
4,415,026	-		DDA3937_RS19415	0.41	+0.2
4,415,026	-		DDA3937_RS19415	0.41	-0.2
4,415,026	-		DDA3937_RS19415	0.41	-1.6