Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18150

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,142,745	+		DDA3937_RS18140	0.58	-0.4
4,142,745	+		DDA3937_RS18140	0.58	-2.6
4,142,746	-		DDA3937_RS18140	0.58	+0.3
4,142,786	-		DDA3937_RS18140	0.61	-0.8
4,142,831	+				+1.1
4,142,832	-		DDA3937_RS18140	0.64	+0.0
4,142,832	-		DDA3937_RS18140	0.64	+0.8
4,142,832	-		DDA3937_RS18140	0.64	-0.5
4,142,900	+		DDA3937_RS18140	0.69	+0.5
4,142,900	+		DDA3937_RS18140	0.69	-2.5
4,142,900	+		DDA3937_RS18140	0.69	-0.3
4,142,900	+		DDA3937_RS18140	0.69	-3.3
4,142,901	-		DDA3937_RS18140	0.69	-2.3
4,142,909	+		DDA3937_RS18140	0.70	-1.6
4,142,910	-		DDA3937_RS18140	0.70	-2.3
4,142,930	+		DDA3937_RS18140	0.71	-0.5
4,142,931	-		DDA3937_RS18140	0.71	-0.8
4,142,931	-		DDA3937_RS18140	0.71	-0.6
4,142,931	-		DDA3937_RS18140	0.71	-0.6
4,143,062	-		DDA3937_RS18140	0.81	-0.7
4,143,071	+		DDA3937_RS18140	0.81	+0.7
4,143,071	+				+1.5
4,143,072	-		DDA3937_RS18140	0.81	-1.8
4,143,111	+		DDA3937_RS18140	0.84	-0.3
4,143,111	+		DDA3937_RS18140	0.84	+0.9
4,143,112	-		DDA3937_RS18140	0.84	-0.7
4,143,168	+		DDA3937_RS18140	0.88	+0.1
4,143,169	-		DDA3937_RS18140	0.88	+2.5
4,143,169	-		DDA3937_RS18140	0.88	+1.5
4,143,169	-		DDA3937_RS18140	0.88	+0.1
4,143,194	+		DDA3937_RS18140	0.90	-0.3
4,143,194	+		DDA3937_RS18140	0.90	-2.0
4,143,194	+		DDA3937_RS18140	0.90	-1.2
4,143,194	+		DDA3937_RS18140	0.90	+0.5
4,143,194	+		DDA3937_RS18140	0.90	-0.8
4,143,195	-				+0.9
4,143,195	-				-1.2
4,143,197	-				+0.0
4,143,215	+				-0.3
4,143,215	+				+0.3
4,143,216	-				+0.7
4,143,216	-				-1.3
4,143,216	-				-0.8
4,143,216	-				+1.2
4,143,281	+				+0.7
4,143,281	+				+0.8
4,143,281	+				-0.1
4,143,281	+				-0.3
4,143,281	+				-1.6
4,143,282	-				+1.2
4,143,282	-				-1.5
4,143,282	-				+0.7
4,143,282	-				-0.8
4,143,403	+				+1.2
4,143,468	+				-0.9
4,143,528	-		DDA3937_RS18145	0.38	+0.2
4,143,603	+		DDA3937_RS18145	0.86	-1.2
4,143,604	-		DDA3937_RS18145	0.86	+0.0
4,143,604	-		DDA3937_RS18145	0.86	-1.7
4,143,604	-		DDA3937_RS18145	0.86	+0.6
4,143,625	+				+0.2
4,143,625	+				+0.0
4,143,626	-				+0.4
4,143,626	-				-0.5
4,143,626	-				-1.0
4,143,626	-				-1.2
4,143,626	-				-2.6
4,143,689	+				+1.5
4,143,691	+				-0.0
4,143,691	+				-2.0
4,143,736	+				-0.6
4,143,737	-				+0.1
4,143,854	-				+0.1
4,143,947	+		DDA3937_RS18150	0.13	+0.8
4,143,947	+		DDA3937_RS18150	0.13	-1.5
4,143,947	+		DDA3937_RS18150	0.13	-0.4
4,143,949	+		DDA3937_RS18150	0.13	+1.0
4,144,112	+		DDA3937_RS18150	0.22	+1.0
4,144,112	+		DDA3937_RS18150	0.22	-0.8
4,144,112	+		DDA3937_RS18150	0.22	-1.0
4,144,112	+		DDA3937_RS18150	0.22	-1.0
4,144,113	-		DDA3937_RS18150	0.23	-0.9
4,144,113	-		DDA3937_RS18150	0.23	-2.6
4,144,113	-		DDA3937_RS18150	0.23	-0.4
4,144,205	+		DDA3937_RS18150	0.28	+0.7
4,144,206	+		DDA3937_RS18150	0.28	-0.5
4,144,207	-		DDA3937_RS18150	0.28	-0.2
4,144,284	-		DDA3937_RS18150	0.33	-0.4
4,144,602	-		DDA3937_RS18150	0.52	-0.4
4,144,602	-		DDA3937_RS18150	0.52	-0.4
4,144,636	+		DDA3937_RS18150	0.54	-0.2
4,144,636	+		DDA3937_RS18150	0.54	-1.3
4,144,636	+		DDA3937_RS18150	0.54	+0.9
4,144,636	+		DDA3937_RS18150	0.54	-2.4
4,144,636	+		DDA3937_RS18150	0.54	+1.8
4,144,636	+		DDA3937_RS18150	0.54	-0.1
4,144,636	+		DDA3937_RS18150	0.54	+1.6
4,144,637	-		DDA3937_RS18150	0.54	-1.4
4,144,637	-		DDA3937_RS18150	0.54	-1.1
4,144,637	-		DDA3937_RS18150	0.54	-0.3
4,144,637	-		DDA3937_RS18150	0.54	+2.0
4,144,637	-		DDA3937_RS18150	0.54	+0.1
4,144,637	-		DDA3937_RS18150	0.54	-0.1
4,144,637	-		DDA3937_RS18150	0.54	-0.5
4,144,637	-		DDA3937_RS18150	0.54	+0.4
4,144,638	+		DDA3937_RS18150	0.54	-0.9
4,144,638	+		DDA3937_RS18150	0.54	-0.8
4,144,638	+		DDA3937_RS18150	0.54	-0.2
4,144,639	-		DDA3937_RS18150	0.54	-0.1
4,144,639	-		DDA3937_RS18150	0.54	+0.6
4,144,639	-		DDA3937_RS18150	0.54	+0.6
4,144,639	-		DDA3937_RS18150	0.54	+0.6
4,144,675	+		DDA3937_RS18150	0.56	+0.4
4,144,675	+		DDA3937_RS18150	0.56	-1.0
4,144,676	-		DDA3937_RS18150	0.56	-0.9
4,144,742	+		DDA3937_RS18150	0.60	+0.7
4,144,742	+		DDA3937_RS18150	0.60	-0.3
4,144,742	+		DDA3937_RS18150	0.60	-1.6
4,144,743	-		DDA3937_RS18150	0.60	-0.0
4,144,816	-		DDA3937_RS18150	0.65	-1.2
4,144,816	-		DDA3937_RS18150	0.65	+0.8
4,144,982	+		DDA3937_RS18150	0.75	-0.2
4,144,992	+		DDA3937_RS18150	0.75	-1.6
4,144,992	+		DDA3937_RS18150	0.75	-0.3
4,144,992	+		DDA3937_RS18150	0.75	-1.2
4,144,992	+		DDA3937_RS18150	0.75	+0.3
4,145,002	+		DDA3937_RS18150	0.76	-0.4
4,145,002	+		DDA3937_RS18150	0.76	+1.1
4,145,117	+		DDA3937_RS18150	0.83	+0.0
4,145,118	-		DDA3937_RS18150	0.83	-0.7
4,145,118	-		DDA3937_RS18150	0.83	-1.4
4,145,153	+		DDA3937_RS18150	0.85	-0.8
4,145,153	+		DDA3937_RS18150	0.85	-1.2
4,145,154	-		DDA3937_RS18150	0.85	-2.3
4,145,154	-		DDA3937_RS18150	0.85	-0.6
4,145,403	-				-1.0
4,145,403	-				+0.4
4,145,452	-				-1.1
4,145,452	-				-1.0
4,145,493	+				-1.8
4,145,494	-				-0.8
4,145,494	-				+0.6
4,145,537	+				+0.1
4,145,676	-				+0.5
4,145,676	-				-0.3
4,145,676	-				+1.8
4,145,720	-				-1.4
4,145,720	-				+0.9
4,145,720	-				-1.9
4,145,725	+				-1.0
4,145,725	+				-0.8
4,145,725	+				-0.3
4,145,725	+				-1.2
4,145,725	+				+1.1
4,145,725	+				+0.6
4,145,725	+				+1.2
4,145,726	-				+1.6
4,145,726	-				-1.3
4,145,726	-				+0.0
4,145,726	-				-0.1
4,145,726	-				-0.0
4,145,726	-				+0.4
4,145,726	-				+0.4
4,145,726	-				-0.3
4,145,898	+		DDA3937_RS18155	0.26	-0.1
4,145,898	+		DDA3937_RS18155	0.26	+0.8
4,145,899	-		DDA3937_RS18155	0.26	-0.8
4,145,899	-		DDA3937_RS18155	0.26	-0.1
4,146,017	-		DDA3937_RS18155	0.38	-0.5
4,146,031	+		DDA3937_RS18155	0.39	-0.2
4,146,032	-		DDA3937_RS18155	0.39	-1.1
4,146,032	-		DDA3937_RS18155	0.39	-0.5
4,146,032	-		DDA3937_RS18155	0.39	+0.6
4,146,042	+		DDA3937_RS18155	0.40	+1.3
4,146,109	+		DDA3937_RS18155	0.47	-0.1
4,146,109	+		DDA3937_RS18155	0.47	-0.8
4,146,109	+		DDA3937_RS18155	0.47	+0.6
4,146,109	+		DDA3937_RS18155	0.47	+0.2
4,146,110	-		DDA3937_RS18155	0.47	+1.1
4,146,110	-		DDA3937_RS18155	0.47	-2.5
4,146,110	-		DDA3937_RS18155	0.47	-0.9
4,146,110	-		DDA3937_RS18155	0.47	+1.2
4,146,110	-				-0.8
4,146,247	+		DDA3937_RS18155	0.61	-0.1
4,146,248	-		DDA3937_RS18155	0.61	-2.8
4,146,289	+		DDA3937_RS18155	0.65	+1.0
4,146,290	-		DDA3937_RS18155	0.65	+0.6
4,146,316	-		DDA3937_RS18155	0.68	-0.1
4,146,316	-		DDA3937_RS18155	0.68	-0.2
4,146,338	-		DDA3937_RS18155	0.70	-0.8
4,146,338	-		DDA3937_RS18155	0.70	+0.2
4,146,367	+		DDA3937_RS18155	0.73	-0.7