Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17580

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,000,586	+				+0.8
4,000,586	+				+1.8
4,000,587	-				-1.4
4,000,597	+				+0.2
4,000,598	-				+0.1
4,000,598	-				-0.1
4,000,598	-				-0.6
4,000,598	-				-0.6
4,000,598	-				+0.1
4,000,598	-				+0.6
4,000,637	+				-0.2
4,000,638	-				-0.0
4,000,647	-				-0.4
4,000,647	-				-1.2
4,000,698	-				-1.1
4,000,698	-				+0.7
4,000,706	+				+0.1
4,000,706	+				+0.8
4,000,707	-				-0.7
4,000,712	+				-1.1
4,000,712	+				-0.3
4,000,766	+				-0.1
4,000,791	+				+0.4
4,000,792	-				-1.1
4,000,840	-				-0.3
4,000,850	+				+1.5
4,000,851	-				-1.4
4,000,851	-				+0.5
4,000,851	-				-0.7
4,000,886	+				-0.8
4,000,886	+				-0.5
4,000,922	+				-2.8
4,000,922	+				+0.5
4,000,923	-				+0.9
4,000,923	-				+1.6
4,000,923	-				-1.4
4,000,937	+				+0.3
4,000,946	+				-0.1
4,000,947	-				-0.9
4,000,947	-				+1.2
4,000,952	+				+1.1
4,000,952	+				+0.1
4,000,952	+				-0.8
4,000,952	+				-1.3
4,000,953	-				-0.6
4,000,953	-				+1.8
4,000,972	+				+0.6
4,000,972	+				+1.7
4,000,973	-				+0.2
4,000,973	-				+0.1
4,000,997	+				+0.7
4,001,006	+				-0.7
4,001,006	+				-0.1
4,001,033	+				-1.1
4,001,066	+				-0.9
4,001,067	-				+0.5
4,001,080	+				-0.1
4,001,081	-				-1.1
4,001,081	-				+0.3
4,001,126	+				-0.5
4,001,126	+				+1.3
4,001,126	+				-0.1
4,001,127	-				-0.3
4,001,133	+				-0.6
4,001,133	+				+0.8
4,001,134	-				-1.1
4,001,134	-				-0.5
4,001,178	-				-1.2
4,001,187	-				-0.2
4,001,237	+				-1.0
4,001,297	+				+1.5
4,001,418	-				+0.5
4,001,418	-				+1.0
4,001,427	-				-1.2
4,001,427	-				+0.2
4,001,477	+				-0.2
4,001,478	-				+0.2
4,001,486	+				+0.4
4,001,486	+				+1.3
4,001,486	+				-0.5
4,001,486	+				-0.9
4,001,487	-				-0.8
4,001,487	-				-1.5
4,001,507	+				+0.1
4,001,507	+				+0.4
4,001,508	-				-0.9
4,001,508	-				-0.0
4,001,568	+				-0.6
4,001,568	+				-0.7
4,001,568	+				-1.4
4,001,569	-				+0.5
4,001,911	+		DDA3937_RS17580	0.20	-0.1
4,001,911	+		DDA3937_RS17580	0.20	+0.2
4,001,911	+		DDA3937_RS17580	0.20	+0.6
4,001,911	+		DDA3937_RS17580	0.20	-0.8
4,001,911	+		DDA3937_RS17580	0.20	-1.2
4,001,911	+		DDA3937_RS17580	0.20	-1.3
4,001,911	+		DDA3937_RS17580	0.20	-1.1
4,001,911	+		DDA3937_RS17580	0.20	-1.1
4,001,911	+		DDA3937_RS17580	0.20	+0.2
4,001,912	-		DDA3937_RS17580	0.20	-1.1
4,001,912	-		DDA3937_RS17580	0.20	+1.1
4,001,912	-		DDA3937_RS17580	0.20	-0.6
4,001,912	-		DDA3937_RS17580	0.20	-0.7
4,001,912	-		DDA3937_RS17580	0.20	+0.0
4,001,912	-		DDA3937_RS17580	0.20	-0.2
4,001,912	-		DDA3937_RS17580	0.20	-1.5
4,002,044	-		DDA3937_RS17580	0.28	-0.9
4,002,223	+		DDA3937_RS17580	0.38	-0.7
4,002,223	+		DDA3937_RS17580	0.38	-0.1
4,002,224	-		DDA3937_RS17580	0.38	+0.3
4,002,224	-		DDA3937_RS17580	0.38	+0.1
4,002,224	-		DDA3937_RS17580	0.38	-1.5
4,002,224	-		DDA3937_RS17580	0.38	-0.5
4,002,242	+		DDA3937_RS17580	0.39	-0.4
4,002,242	+		DDA3937_RS17580	0.39	-1.4
4,002,242	+		DDA3937_RS17580	0.39	-0.5
4,002,242	+		DDA3937_RS17580	0.39	-0.5
4,002,242	+		DDA3937_RS17580	0.39	+0.0
4,002,242	+		DDA3937_RS17580	0.39	-1.9
4,002,242	+		DDA3937_RS17580	0.39	-1.3
4,002,243	-		DDA3937_RS17580	0.39	-0.2
4,002,243	-		DDA3937_RS17580	0.39	+0.1
4,002,243	-		DDA3937_RS17580	0.39	+0.8
4,002,243	-		DDA3937_RS17580	0.39	+0.0
4,002,243	-		DDA3937_RS17580	0.39	-0.1
4,002,243	-		DDA3937_RS17580	0.39	-1.4
4,002,243	-		DDA3937_RS17580	0.39	-1.0
4,002,243	-		DDA3937_RS17580	0.39	+0.2
4,002,243	-		DDA3937_RS17580	0.39	-1.0
4,002,243	-		DDA3937_RS17580	0.39	-0.1
4,002,243	-		DDA3937_RS17580	0.39	-1.2
4,002,243	-		DDA3937_RS17580	0.39	+1.1
4,002,243	-		DDA3937_RS17580	0.39	-0.2
4,002,292	+		DDA3937_RS17580	0.42	+0.3
4,002,292	+		DDA3937_RS17580	0.42	-0.1
4,002,442	+		DDA3937_RS17580	0.51	-0.7
4,002,442	+		DDA3937_RS17580	0.51	-1.1
4,002,442	+		DDA3937_RS17580	0.51	-1.1
4,002,442	+		DDA3937_RS17580	0.51	+0.0
4,002,442	+		DDA3937_RS17580	0.51	+1.5
4,002,442	+		DDA3937_RS17580	0.51	-0.3
4,002,442	+		DDA3937_RS17580	0.51	-0.2
4,002,442	+		DDA3937_RS17580	0.51	-0.1
4,002,442	+		DDA3937_RS17580	0.51	-0.7
4,002,442	+		DDA3937_RS17580	0.51	+0.6
4,002,443	-		DDA3937_RS17580	0.51	+0.1
4,002,443	-		DDA3937_RS17580	0.51	-0.2
4,002,519	-		DDA3937_RS17580	0.56	+0.5
4,002,519	-		DDA3937_RS17580	0.56	-1.2
4,002,519	-		DDA3937_RS17580	0.56	-1.8
4,002,519	-		DDA3937_RS17580	0.56	+0.2
4,002,519	-		DDA3937_RS17580	0.56	-2.1
4,002,560	-		DDA3937_RS17580	0.58	-1.2
4,002,560	-		DDA3937_RS17580	0.58	-1.6
4,002,560	-		DDA3937_RS17580	0.58	+1.3
4,002,705	+		DDA3937_RS17580	0.67	+0.7
4,002,706	-		DDA3937_RS17580	0.67	-1.6
4,002,706	-		DDA3937_RS17580	0.67	-0.3
4,002,706	-		DDA3937_RS17580	0.67	-0.4
4,002,706	-		DDA3937_RS17580	0.67	-1.1
4,002,814	+		DDA3937_RS17580	0.73	+1.2
4,003,027	+		DDA3937_RS17580	0.86	-1.0
4,003,087	+		DDA3937_RS17580	0.89	+0.4
4,003,088	-		DDA3937_RS17580	0.89	+0.0
4,003,091	+		DDA3937_RS17580	0.90	+1.2
4,003,092	-		DDA3937_RS17580	0.90	+0.4
4,003,181	+				-1.3
4,003,184	+				-0.9
4,003,184	+				-0.2
4,003,185	-				+0.1
4,003,185	-				+0.1
4,003,190	+				+1.5
4,003,190	+				+0.6
4,003,190	+				-0.1
4,003,190	+				-0.0
4,003,190	+				+0.2
4,003,190	+				+0.1
4,003,190	+				-0.8
4,003,190	+				-1.9
4,003,190	+				+1.3
4,003,191	-				-0.4
4,003,191	-				+0.5
4,003,191	-				-0.4
4,003,191	-				+0.6
4,003,191	-				-1.9
4,003,191	-				+1.0
4,003,259	+				+1.2
4,003,259	+				+0.6
4,003,260	-				-0.5
4,003,260	-				+0.0
4,003,267	+				-1.1
4,003,268	-				+0.1
4,003,268	-				-0.5
4,003,288	-				-0.5
4,003,290	+				+0.0
4,003,290	+				-0.5
4,003,291	-				-0.4
4,003,291	-				+0.4
4,003,291	-				-0.2
4,003,291	-				-1.2
4,003,314	+				+0.0
4,003,314	+				-0.5
4,003,314	+				-0.4
4,003,315	-				+0.7
4,003,315	-				-0.4
4,003,315	-				-0.5
4,003,350	+				-0.4
4,003,380	+				-1.3
4,003,380	+				-0.5
4,003,381	-				-0.1
4,003,389	+				+0.9
4,003,415	+				-1.1
4,003,415	+				-0.4
4,003,415	+				-1.1
4,003,416	-				+0.8
4,003,416	-				+0.4
4,003,441	+				+2.5
4,003,493	+				+0.5
4,003,494	-				-0.6
4,003,508	-				-0.6
4,003,510	-				-0.9
4,003,530	-				-0.5
4,003,541	-				-0.8
4,003,541	-				+0.7
4,003,557	+				+1.5
4,003,577	+				+0.2
4,003,577	+				+0.1
4,003,577	+				-0.2
4,003,578	-				-1.6
4,003,578	-				-0.4
4,003,578	-				+0.8
4,003,578	-				+0.0
4,003,578	-				-0.6
4,003,578	-				-0.5
4,003,578	-				-0.6
4,003,605	+				+0.8
4,003,605	+				+1.5
4,003,605	+				-2.9
4,003,605	+				-0.1
4,003,606	-				-0.5
4,003,606	-				-0.6
4,003,606	-				-0.1
4,003,606	-				+0.3
4,003,606	-				+0.5
4,003,606	-				-0.7
4,003,649	-				+1.3
4,003,713	+				-2.5
4,003,714	-				+1.1
4,003,714	-				+0.8
4,003,736	+				+0.9
4,003,737	-				+0.6
4,003,737	-				-1.8
4,003,737	-				+0.1
4,003,745	+				+0.2
4,003,746	-				-0.8
4,003,746	-				-0.8
4,003,755	+				-0.3
4,003,756	-				-0.3
4,003,756	-				+1.9
4,003,756	-				+0.1
4,003,758	+				-1.6
4,003,759	-				+0.2
4,003,759	-				+1.5
4,003,759	-				+0.6
4,003,759	-				-1.2
4,003,889	+				+0.1
4,003,889	+				+0.5
4,003,889	+				+0.3
4,003,889	+				-1.3
4,003,890	-				-0.3
4,003,890	-				-0.2
4,004,027	-				+0.1
4,004,028	+				+0.5
4,004,028	+				-0.9
4,004,029	-				+1.4
4,004,052	+				-0.1
4,004,063	-				+0.4
4,004,088	+				+2.8
4,004,126	+				+0.4
4,004,146	-				-0.2
4,004,146	-				+0.0
4,004,146	-				+0.8
4,004,149	+				+1.5
4,004,150	-				+0.1
4,004,176	-				-0.3
4,004,221	+				+2.3
4,004,237	-				-0.1