Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17235

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,924,205	+				+0.7
3,924,205	+				-0.7
3,924,205	+				-0.4
3,924,205	+				-0.2
3,924,206	-				-0.3
3,924,229	+				-0.4
3,924,248	+				-0.1
3,924,249	-				-1.0
3,924,299	-				-0.2
3,924,344	+		DDA3937_RS17235	0.11	+0.5
3,924,344	+		DDA3937_RS17235	0.11	-0.0
3,924,345	-		DDA3937_RS17235	0.11	+0.3
3,924,376	+		DDA3937_RS17235	0.15	+0.2
3,924,377	-		DDA3937_RS17235	0.15	-0.5
3,924,387	-		DDA3937_RS17235	0.17	+0.9
3,924,517	+		DDA3937_RS17235	0.34	-0.7
3,924,629	+		DDA3937_RS17235	0.49	-0.9
3,924,630	-		DDA3937_RS17235	0.49	-0.1
3,924,690	+		DDA3937_RS17235	0.57	-0.1
3,924,691	-				+1.1
3,924,691	-		DDA3937_RS17235	0.57	-1.2
3,924,691	-		DDA3937_RS17235	0.57	-1.3
3,924,691	-		DDA3937_RS17235	0.57	+2.2
3,924,731	+		DDA3937_RS17235	0.63	-0.2
3,924,753	+				+2.3
3,924,753	+		DDA3937_RS17235	0.65	-0.8
3,924,753	+		DDA3937_RS17235	0.65	-1.5
3,924,753	+		DDA3937_RS17235	0.65	+0.7
3,924,753	+		DDA3937_RS17235	0.65	-0.7
3,924,753	+		DDA3937_RS17235	0.65	+3.1
3,924,753	+		DDA3937_RS17235	0.65	-0.3
3,924,753	+		DDA3937_RS17235	0.65	-1.7
3,924,754	-		DDA3937_RS17235	0.66	+1.8
3,924,754	-		DDA3937_RS17235	0.66	+0.0
3,924,754	-		DDA3937_RS17235	0.66	-1.2
3,924,754	-		DDA3937_RS17235	0.66	+1.5
3,924,754	-		DDA3937_RS17235	0.66	-1.0
3,924,870	-		DDA3937_RS17235	0.81	-0.1
3,924,870	-		DDA3937_RS17235	0.81	-0.7
3,924,879	-		DDA3937_RS17235	0.82	-0.3
3,924,879	-		DDA3937_RS17235	0.82	-1.3
3,924,879	-		DDA3937_RS17235	0.82	-0.8
3,924,884	+		DDA3937_RS17235	0.83	-0.5
3,924,885	-		DDA3937_RS17235	0.83	-1.1
3,924,903	+		DDA3937_RS17235	0.85	+0.5
3,924,903	+		DDA3937_RS17235	0.85	+1.2
3,924,903	+		DDA3937_RS17235	0.85	+0.6
3,924,903	+		DDA3937_RS17235	0.85	+2.2
3,924,903	+		DDA3937_RS17235	0.85	-0.7
3,924,903	+		DDA3937_RS17235	0.85	+1.3
3,924,903	+		DDA3937_RS17235	0.85	-1.9
3,924,903	+		DDA3937_RS17235	0.85	-0.3
3,924,904	-		DDA3937_RS17235	0.86	-0.2
3,924,904	-		DDA3937_RS17235	0.86	+1.2
3,924,905	+		DDA3937_RS17235	0.86	-2.5
3,924,905	+		DDA3937_RS17235	0.86	-0.1
3,924,905	+		DDA3937_RS17235	0.86	+0.1
3,924,906	-		DDA3937_RS17235	0.86	+0.2
3,924,906	-		DDA3937_RS17235	0.86	-0.1
3,924,976	+				-0.1
3,925,007	-				-0.1
3,925,043	+				-0.5
3,925,043	+				+0.3
3,925,043	+				-0.1
3,925,043	+				+0.2
3,925,044	-				-0.5
3,925,044	-				-0.2
3,925,069	-				-0.7
3,925,075	+				+0.2
3,925,076	-				+0.8
3,925,076	-				-2.0
3,925,076	-				-1.0
3,925,078	-				+0.8
3,925,078	-				-1.9
3,925,116	+				-1.0
3,925,117	-				-1.0
3,925,198	+				+0.5
3,925,199	-				-0.4
3,925,212	+				+1.5
3,925,212	+				-2.3
3,925,212	+				+1.1
3,925,212	+				+0.2
3,925,212	+				-0.1
3,925,213	-				+0.7
3,925,213	-				-0.5
3,925,213	-				+0.7
3,925,213	-				+0.7
3,925,213	-				-1.5
3,925,213	-				-2.0
3,925,235	+				-1.7
3,925,235	+				-0.5
3,925,235	+				+0.0
3,925,236	-				+0.2
3,925,236	-				+0.8
3,925,236	-				+0.0
3,925,253	+				-0.5
3,925,406	+				-0.9
3,925,406	+				+0.2
3,925,406	+				+0.6
3,925,407	-				+0.7
3,925,407	-				-1.1
3,925,407	-				+0.3
3,925,412	+				-0.0
3,925,412	+				-0.1
3,925,412	+				+0.1
3,925,413	-				-0.4
3,925,413	-				-0.3
3,925,413	-				+1.7
3,925,413	-				-0.2
3,925,425	+				+0.3
3,925,425	+				-1.3
3,925,425	+				-0.2
3,925,425	+				-0.1
3,925,426	-				+1.4
3,925,426	-				-0.4
3,925,426	-				+1.5
3,925,426	-				+0.6
3,925,426	-				-2.1
3,925,426	-				+0.7
3,925,426	-				-0.3
3,925,458	+		DDA3937_RS17240	0.11	-0.1
3,925,458	+		DDA3937_RS17240	0.11	+0.8
3,925,458	+		DDA3937_RS17240	0.11	+0.8
3,925,458	+		DDA3937_RS17240	0.11	-0.8
3,925,458	+		DDA3937_RS17240	0.11	-1.1
3,925,458	+		DDA3937_RS17240	0.11	-0.5
3,925,459	-		DDA3937_RS17240	0.11	+0.1
3,925,459	-		DDA3937_RS17240	0.11	-0.4
3,925,459	-		DDA3937_RS17240	0.11	+0.6
3,925,459	-		DDA3937_RS17240	0.11	+0.9
3,925,459	-		DDA3937_RS17240	0.11	-0.6
3,925,459	-		DDA3937_RS17240	0.11	+0.1
3,925,459	-		DDA3937_RS17240	0.11	-0.3
3,925,459	-		DDA3937_RS17240	0.11	-0.7
3,925,459	-		DDA3937_RS17240	0.11	+0.2
3,925,459	-		DDA3937_RS17240	0.11	-1.1
3,925,460	+		DDA3937_RS17240	0.11	+0.9
3,925,460	+		DDA3937_RS17240	0.11	-0.7
3,925,461	-		DDA3937_RS17240	0.11	-0.0
3,925,620	-		DDA3937_RS17240	0.20	+1.8
3,925,626	-		DDA3937_RS17240	0.20	+0.2
3,925,662	-		DDA3937_RS17240	0.22	-1.0
3,925,794	+		DDA3937_RS17240	0.29	-0.4
3,925,794	+		DDA3937_RS17240	0.29	-1.1
3,925,794	+		DDA3937_RS17240	0.29	-0.8
3,925,794	+		DDA3937_RS17240	0.29	-0.3
3,925,794	+		DDA3937_RS17240	0.29	-0.5
3,925,794	+		DDA3937_RS17240	0.29	-0.2
3,925,794	+		DDA3937_RS17240	0.29	+0.9
3,925,795	-		DDA3937_RS17240	0.29	-1.1
3,925,795	-		DDA3937_RS17240	0.29	-0.5
3,925,795	-		DDA3937_RS17240	0.29	+0.8
3,925,795	-		DDA3937_RS17240	0.29	+1.3
3,925,795	-		DDA3937_RS17240	0.29	-1.3
3,925,795	-		DDA3937_RS17240	0.29	-0.3
3,925,795	-		DDA3937_RS17240	0.29	-0.8
3,925,795	-		DDA3937_RS17240	0.29	+0.8
3,925,795	-		DDA3937_RS17240	0.29	-1.1
3,925,795	-		DDA3937_RS17240	0.29	-0.0
3,925,795	-		DDA3937_RS17240	0.29	+0.2
3,925,795	-		DDA3937_RS17240	0.29	-0.3
3,925,795	-		DDA3937_RS17240	0.29	-1.1
3,925,806	+		DDA3937_RS17240	0.29	+0.7
3,925,865	+		DDA3937_RS17240	0.32	+0.3
3,925,865	+		DDA3937_RS17240	0.32	+0.3
3,925,971	+		DDA3937_RS17240	0.38	+0.7
3,925,971	+		DDA3937_RS17240	0.38	-0.1
3,925,972	-		DDA3937_RS17240	0.38	+0.1