Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17025

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,873,771	+		DDA3937_RS17020	0.37	-0.0
3,873,771	+		DDA3937_RS17020	0.37	-1.2
3,873,771	+		DDA3937_RS17020	0.37	+0.1
3,873,771	+		DDA3937_RS17020	0.37	-0.6
3,873,771	+		DDA3937_RS17020	0.37	-1.7
3,873,801	+		DDA3937_RS17020	0.39	-0.7
3,873,845	+		DDA3937_RS17020	0.43	-0.3
3,874,181	+		DDA3937_RS17020	0.68	+0.5
3,874,184	+		DDA3937_RS17020	0.68	+0.1
3,874,184	+		DDA3937_RS17020	0.68	-2.5
3,874,184	+		DDA3937_RS17020	0.68	+0.1
3,874,186	+		DDA3937_RS17020	0.68	-0.2
3,874,186	+		DDA3937_RS17020	0.68	-0.1
3,874,186	+		DDA3937_RS17020	0.68	-0.8
3,874,186	+		DDA3937_RS17020	0.68	-0.5
3,874,217	+		DDA3937_RS17020	0.71	+0.6
3,874,217	+		DDA3937_RS17020	0.71	+0.5
3,874,595	+				+1.5
3,874,608	+				-0.5
3,874,608	+				-0.4
3,874,608	+				+0.3
3,874,608	+				-2.5
3,874,608	+				-0.6
3,874,608	+				+0.1
3,874,628	+				-0.2
3,874,628	+				+0.6
3,874,636	+				+0.1
3,874,636	+				+0.7
3,874,637	-				-1.1
3,874,646	+				+1.0
3,874,646	+				+0.1
3,874,646	+				-0.5
3,874,646	+				+1.5
3,874,646	+				+0.0
3,874,646	+				-0.4
3,874,647	-				-1.7
3,874,647	-				-1.4
3,874,678	+				-0.4
3,874,678	+				-0.4
3,874,678	+				+0.1
3,874,678	+				-2.1
3,874,695	+				-1.0
3,874,695	+				-1.4
3,874,695	+				-2.1
3,874,695	+				-0.9
3,874,695	+				+0.5
3,874,695	+				+0.7
3,874,695	+				+0.5
3,874,695	+				-0.9
3,874,695	+				+0.1
3,874,695	+				+0.3
3,874,696	-				-0.1
3,874,696	-				-3.4
3,874,703	+				-0.4
3,874,746	+				-0.7
3,874,769	-				-0.5
3,874,841	-				-1.1
3,874,888	-				-0.9
3,874,888	-				-1.8
3,874,888	-				-0.5
3,875,134	+		DDA3937_RS17025	0.17	-0.4
3,875,134	+		DDA3937_RS17025	0.17	-2.4
3,875,134	+		DDA3937_RS17025	0.17	-1.4
3,875,134	+		DDA3937_RS17025	0.17	-1.0
3,875,135	-		DDA3937_RS17025	0.17	+1.5
3,875,135	-		DDA3937_RS17025	0.17	-1.4
3,875,135	-		DDA3937_RS17025	0.17	-2.1
3,875,135	-		DDA3937_RS17025	0.17	-1.7
3,875,135	-		DDA3937_RS17025	0.17	-1.9
3,875,180	-		DDA3937_RS17025	0.18	-1.1
3,875,430	+		DDA3937_RS17025	0.28	-1.4
3,875,431	-		DDA3937_RS17025	0.28	-0.5
3,875,446	+		DDA3937_RS17025	0.28	-1.6
3,875,446	+		DDA3937_RS17025	0.28	-2.1
3,875,446	+		DDA3937_RS17025	0.28	-0.4
3,875,446	+		DDA3937_RS17025	0.28	-2.0
3,875,446	+		DDA3937_RS17025	0.28	-1.1
3,875,446	+		DDA3937_RS17025	0.28	-2.0
3,875,446	+		DDA3937_RS17025	0.28	-0.5
3,875,446	+		DDA3937_RS17025	0.28	-0.7
3,875,446	+		DDA3937_RS17025	0.28	-1.9
3,875,446	+		DDA3937_RS17025	0.28	-0.9
3,875,447	-		DDA3937_RS17025	0.28	-0.7
3,875,447	-		DDA3937_RS17025	0.28	-0.4
3,875,447	-		DDA3937_RS17025	0.28	-0.4
3,875,447	-		DDA3937_RS17025	0.28	-0.4
3,875,447	-		DDA3937_RS17025	0.28	-0.5
3,875,447	-		DDA3937_RS17025	0.28	+1.0
3,875,570	+		DDA3937_RS17025	0.33	-1.1
3,875,571	-		DDA3937_RS17025	0.33	-0.8
3,875,571	-		DDA3937_RS17025	0.33	-1.3
3,875,648	-		DDA3937_RS17025	0.35	-1.4
3,875,651	+		DDA3937_RS17025	0.36	-2.2
3,875,651	+		DDA3937_RS17025	0.36	-1.0
3,875,651	+		DDA3937_RS17025	0.36	-0.8
3,875,652	-		DDA3937_RS17025	0.36	-0.2
3,875,652	-		DDA3937_RS17025	0.36	-1.2
3,875,787	+		DDA3937_RS17025	0.40	-1.4
3,875,788	-		DDA3937_RS17025	0.40	-1.9
3,875,788	-		DDA3937_RS17025	0.40	-1.9
3,875,788	-		DDA3937_RS17025	0.40	-0.4
3,875,788	-		DDA3937_RS17025	0.40	-1.1
3,876,081	+		DDA3937_RS17025	0.51	-0.2
3,876,081	+		DDA3937_RS17025	0.51	-0.5
3,876,081	+		DDA3937_RS17025	0.51	-0.7
3,876,082	-		DDA3937_RS17025	0.51	-0.7
3,876,082	-		DDA3937_RS17025	0.51	-0.4
3,876,082	-		DDA3937_RS17025	0.51	-1.2
3,876,202	-		DDA3937_RS17025	0.55	-0.6
3,876,212	+		DDA3937_RS17025	0.56	-0.5
3,876,212	+		DDA3937_RS17025	0.56	-2.0
3,876,213	-		DDA3937_RS17025	0.56	-2.7
3,876,213	-		DDA3937_RS17025	0.56	-1.2
3,876,213	-		DDA3937_RS17025	0.56	-0.9
3,876,213	-		DDA3937_RS17025	0.56	-0.3
3,876,244	+		DDA3937_RS17025	0.57	-0.9
3,876,280	+		DDA3937_RS17025	0.58	-0.2
3,876,280	+		DDA3937_RS17025	0.58	-0.7
3,876,281	-		DDA3937_RS17025	0.58	-1.6
3,876,281	-		DDA3937_RS17025	0.58	-2.8
3,876,281	-		DDA3937_RS17025	0.58	-0.7
3,876,322	-		DDA3937_RS17025	0.60	-0.9
3,876,333	+		DDA3937_RS17025	0.60	+1.1
3,876,334	-		DDA3937_RS17025	0.60	-2.8
3,876,353	-		DDA3937_RS17025	0.61	-1.9
3,876,398	+		DDA3937_RS17025	0.63	-0.7
3,876,398	+		DDA3937_RS17025	0.63	-1.9
3,876,398	+		DDA3937_RS17025	0.63	-2.2
3,876,429	+		DDA3937_RS17025	0.64	-1.5
3,876,429	+		DDA3937_RS17025	0.64	-1.2
3,876,430	-		DDA3937_RS17025	0.64	-1.2
3,876,430	-		DDA3937_RS17025	0.64	-0.3
3,876,430	-		DDA3937_RS17025	0.64	-1.9
3,876,570	+		DDA3937_RS17025	0.69	-0.9
3,876,603	+				+1.5
3,876,615	+		DDA3937_RS17025	0.70	-1.4
3,876,615	+		DDA3937_RS17025	0.70	-2.0
3,876,615	+		DDA3937_RS17025	0.70	+1.9
3,876,754	-		DDA3937_RS17025	0.75	-1.8
3,876,830	+		DDA3937_RS17025	0.78	-1.4
3,876,830	+		DDA3937_RS17025	0.78	-1.2
3,876,830	+		DDA3937_RS17025	0.78	-0.6
3,876,830	+		DDA3937_RS17025	0.78	+0.2
3,876,830	+		DDA3937_RS17025	0.78	+0.5
3,876,831	-		DDA3937_RS17025	0.78	-1.1
3,876,831	-		DDA3937_RS17025	0.78	-0.8
3,876,831	-		DDA3937_RS17025	0.78	+0.0
3,876,831	-		DDA3937_RS17025	0.78	-2.4
3,876,831	-		DDA3937_RS17025	0.78	-0.1
3,876,831	-		DDA3937_RS17025	0.78	+0.5
3,876,831	-		DDA3937_RS17025	0.78	-0.9
3,876,831	-		DDA3937_RS17025	0.78	-2.1
3,876,891	+		DDA3937_RS17025	0.80	-1.7
3,876,891	+		DDA3937_RS17025	0.80	-0.5
3,876,892	-		DDA3937_RS17025	0.80	-2.1
3,876,897	+		DDA3937_RS17025	0.81	-1.5
3,876,898	-		DDA3937_RS17025	0.81	-0.8
3,876,973	+		DDA3937_RS17025	0.83	-2.0
3,876,973	+		DDA3937_RS17025	0.83	-1.7
3,876,973	+		DDA3937_RS17025	0.83	-3.4
3,876,973	+		DDA3937_RS17025	0.83	-0.6
3,876,974	-		DDA3937_RS17025	0.83	-0.5
3,876,974	-		DDA3937_RS17025	0.83	-0.5
3,876,974	-		DDA3937_RS17025	0.83	+0.1
3,877,032	+		DDA3937_RS17025	0.85	-2.1
3,877,032	+		DDA3937_RS17025	0.85	-2.5
3,877,033	-		DDA3937_RS17025	0.85	-2.9
3,877,263	+				-1.4
3,877,263	+				-2.7
3,877,263	+				-1.3
3,877,264	-				+0.1
3,877,264	-				-0.9
3,877,264	-				-0.4
3,877,264	-				-1.3
3,877,264	-				-1.6
3,877,273	+				-0.4
3,877,273	+				-1.0
3,877,273	+				-1.1
3,877,273	+				-1.4
3,877,273	+				-0.4
3,877,273	+				-1.3
3,877,273	+				+0.2
3,877,273	+				-1.4
3,877,274	-				-1.9
3,877,274	-				-0.1
3,877,274	-				-2.2
3,877,274	-				-1.2
3,877,274	-				-0.8
3,877,274	-				+1.8
3,877,276	-				-1.0
3,877,487	+				-1.5
3,877,488	-				-0.7
3,877,488	-				+0.9
3,877,488	-				+0.2
3,877,488	-				-1.5
3,877,488	-				+3.1
3,877,488	-				-1.4
3,877,645	+				+0.2
3,877,646	-				-1.5
3,877,647	+				-2.1
3,877,648	-				+0.0