Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16830

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS16820 and DDA3937_RS16825 are separated by 168 nucleotidesDDA3937_RS16825 and DDA3937_RS16830 are separated by 107 nucleotidesDDA3937_RS16830 and DDA3937_RS16835 are separated by 70 nucleotides DDA3937_RS16820: DDA3937_RS16820 - 23S ribosomal RNA, at 3,824,886 to 3,827,794 _RS16820 DDA3937_RS16825: DDA3937_RS16825 - tRNA-Ala, at 3,827,963 to 3,828,038 _RS16825 DDA3937_RS16830: DDA3937_RS16830 - tRNA-Ile, at 3,828,146 to 3,828,222 _RS16830 DDA3937_RS16835: DDA3937_RS16835 - 16S ribosomal RNA, at 3,828,293 to 3,829,834 _RS16835 Position (kb) 3828 3829Strain fitness (log2 ratio) -2 -1 0 1 2at 3827.883 kb on - strandat 3827.883 kb on - strandat 3827.883 kb on - strandat 3828.101 kb on - strandat 3828.101 kb on - strandat 3828.109 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
3,827,883 - -1.6
3,827,883 - -0.6
3,827,883 - -2.1
3,828,101 - -0.0
3,828,101 - -1.9
3,828,109 - +2.0

Or see this region's nucleotide sequence