Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,576,346	+		DDA3937_RS15615	0.69	+1.0
3,576,346	+		DDA3937_RS15615	0.69	-1.7
3,576,369	+		DDA3937_RS15615	0.71	-0.3
3,576,370	-		DDA3937_RS15615	0.71	-1.9
3,576,370	-		DDA3937_RS15615	0.71	-1.2
3,576,370	-		DDA3937_RS15615	0.71	-1.4
3,576,370	-		DDA3937_RS15615	0.71	-0.6
3,576,370	-		DDA3937_RS15615	0.71	+0.1
3,576,381	+		DDA3937_RS15615	0.72	-0.0
3,576,381	+		DDA3937_RS15615	0.72	-0.5
3,576,382	-		DDA3937_RS15615	0.72	-1.1
3,576,408	+		DDA3937_RS15615	0.75	+1.2
3,576,483	-		DDA3937_RS15615	0.81	+0.2
3,576,483	-		DDA3937_RS15615	0.81	-0.5
3,576,537	-		DDA3937_RS15615	0.85	-0.7
3,576,557	+		DDA3937_RS15615	0.87	-0.0
3,576,585	+		DDA3937_RS15615	0.89	+0.5
3,576,586	-		DDA3937_RS15615	0.89	+0.2
3,576,586	-		DDA3937_RS15615	0.89	+1.5
3,576,586	-		DDA3937_RS15615	0.89	+0.6
3,576,621	+				-0.6
3,576,621	+				+0.3
3,576,622	-				-1.0
3,576,645	+				+0.7
3,576,645	+				-0.3
3,576,646	-				+0.7
3,576,731	+				-0.1
3,576,783	+				-1.3
3,576,784	-				-0.8
3,576,784	-				-1.3
3,576,817	-				+0.5
3,576,894	-				+0.3
3,576,903	+				+0.0
3,576,904	-				-0.7
3,576,904	-				-0.2
3,576,907	-				+1.2
3,576,920	+				-0.1
3,576,931	+				+1.3
3,576,936	-				-1.0
3,576,989	+				-1.6
3,576,996	-				+0.0
3,576,996	-				-0.4
3,576,998	-				-0.6
3,577,065	-				-0.5
3,577,069	-				+1.3
3,577,217	+				+0.2
3,577,235	+				-1.0
3,577,235	+				+1.2
3,577,261	+				-1.2
3,577,262	-				+0.4
3,577,295	+				+0.3
3,577,296	-				-1.6
3,577,296	-				-1.3
3,577,428	+		DDA3937_RS15620	0.16	-0.5
3,577,428	+		DDA3937_RS15620	0.16	+0.2
3,577,429	-		DDA3937_RS15620	0.16	+2.1
3,577,429	-		DDA3937_RS15620	0.16	+1.3
3,577,429	-		DDA3937_RS15620	0.16	+0.3
3,577,455	-		DDA3937_RS15620	0.19	-0.1
3,577,537	-		DDA3937_RS15620	0.26	+3.8
3,577,658	+		DDA3937_RS15620	0.36	-1.4
3,577,658	+		DDA3937_RS15620	0.36	-0.3
3,577,659	-		DDA3937_RS15620	0.36	-2.3
3,577,680	+		DDA3937_RS15620	0.38	-1.5
3,577,680	+		DDA3937_RS15620	0.38	+0.0
3,577,680	+		DDA3937_RS15620	0.38	+0.3
3,577,680	+		DDA3937_RS15620	0.38	-0.3
3,577,680	+		DDA3937_RS15620	0.38	+0.8
3,577,680	+		DDA3937_RS15620	0.38	-0.3
3,577,681	-		DDA3937_RS15620	0.38	-2.0
3,577,681	-		DDA3937_RS15620	0.38	-0.7
3,577,702	+		DDA3937_RS15620	0.40	-0.5
3,577,702	+		DDA3937_RS15620	0.40	-0.7
3,577,702	+		DDA3937_RS15620	0.40	+0.3
3,577,702	+		DDA3937_RS15620	0.40	-0.9
3,577,703	-		DDA3937_RS15620	0.40	-0.7
3,577,703	-		DDA3937_RS15620	0.40	+1.3
3,577,703	-		DDA3937_RS15620	0.40	-0.3
3,577,703	-		DDA3937_RS15620	0.40	-0.5
3,577,714	-		DDA3937_RS15620	0.41	+0.4
3,577,827	+		DDA3937_RS15620	0.50	-0.2
3,577,827	+		DDA3937_RS15620	0.50	-2.2
3,577,827	+		DDA3937_RS15620	0.50	+0.7
3,577,827	+		DDA3937_RS15620	0.50	-1.8
3,577,896	+		DDA3937_RS15620	0.56	-0.5
3,577,897	-		DDA3937_RS15620	0.56	-1.4
3,577,897	-		DDA3937_RS15620	0.56	-0.4
3,577,897	-		DDA3937_RS15620	0.56	-0.3
3,577,997	+		DDA3937_RS15620	0.65	-1.0
3,578,037	-		DDA3937_RS15620	0.68	+1.3
3,578,047	+		DDA3937_RS15620	0.69	-1.7
3,578,070	+		DDA3937_RS15620	0.71	+0.2
3,578,070	+		DDA3937_RS15620	0.71	-1.4
3,578,070	+				+2.3
3,578,070	+		DDA3937_RS15620	0.71	-1.7
3,578,071	-		DDA3937_RS15620	0.71	+0.3
3,578,071	-		DDA3937_RS15620	0.71	-0.7
3,578,071	-		DDA3937_RS15620	0.71	-1.8
3,578,071	-		DDA3937_RS15620	0.71	+0.4
3,578,071	-		DDA3937_RS15620	0.71	-0.9
3,578,071	-		DDA3937_RS15620	0.71	+0.9
3,578,071	-		DDA3937_RS15620	0.71	-0.0
3,578,072	+		DDA3937_RS15620	0.71	+0.4
3,578,072	+		DDA3937_RS15620	0.71	-0.5
3,578,072	+		DDA3937_RS15620	0.71	+0.1
3,578,072	+		DDA3937_RS15620	0.71	-0.1
3,578,073	-		DDA3937_RS15620	0.71	-0.7
3,578,073	-				-0.3
3,578,073	-		DDA3937_RS15620	0.71	-0.3
3,578,073	-		DDA3937_RS15620	0.71	-0.8
3,578,073	-		DDA3937_RS15620	0.71	-0.3
3,578,073	-		DDA3937_RS15620	0.71	+0.8
3,578,073	-		DDA3937_RS15620	0.71	-0.1
3,578,082	+		DDA3937_RS15620	0.72	+0.7
3,578,083	-		DDA3937_RS15620	0.72	+0.3
3,578,116	-		DDA3937_RS15620	0.75	-0.3
3,578,121	+		DDA3937_RS15620	0.75	-1.1
3,578,121	+		DDA3937_RS15620	0.75	-1.5
3,578,121	+		DDA3937_RS15620	0.75	-0.3
3,578,121	+		DDA3937_RS15620	0.75	-1.5
3,578,248	+		DDA3937_RS15620	0.86	-0.3
3,578,248	+		DDA3937_RS15620	0.86	-0.3
3,578,248	+		DDA3937_RS15620	0.86	+0.7
3,578,249	-		DDA3937_RS15620	0.86	+1.3
3,578,249	-		DDA3937_RS15620	0.86	+0.0
3,578,249	-		DDA3937_RS15620	0.86	-0.3
3,578,249	-		DDA3937_RS15620	0.86	+1.7
3,578,291	+		DDA3937_RS15620	0.89	-1.3
3,578,291	+		DDA3937_RS15620	0.89	-0.7
3,578,292	-		DDA3937_RS15620	0.90	-1.4
3,578,292	-		DDA3937_RS15620	0.90	-1.0
3,578,319	+				-1.1
3,578,343	+				-0.1
3,578,343	+				-0.9
3,578,344	-				+0.4
3,578,344	-				+0.8
3,578,344	-				-2.0
3,578,366	+				-0.9
3,578,366	+				+0.0
3,578,366	+				+0.3
3,578,367	-				+0.3
3,578,367	-				-0.5
3,578,367	-				-2.2
3,578,367	-				+0.0
3,578,367	-				+0.0
3,578,367	-				+1.7
3,578,376	-				-0.6
3,578,376	-				-0.6
3,578,387	+				+0.3
3,578,387	+				-1.0
3,578,387	+				+2.0
3,578,387	+				-0.3
3,578,387	+				+0.3
3,578,388	-				+0.8
3,578,388	-				-2.9
3,578,413	-				-1.6
3,578,413	-				-1.1
3,578,428	-				-0.7
3,578,477	-				+0.8
3,578,600	+				+1.8
3,578,600	+				+0.6
3,578,600	+				-0.6
3,578,600	+				-2.0
3,578,600	+				+0.2
3,578,601	-				+0.8
3,578,601	-				+0.5
3,578,601	-				-1.7
3,578,639	+				+1.0
3,578,639	+				+1.2
3,578,639	+				+0.6
3,578,639	+				-0.2
3,578,640	-				-0.4
3,578,640	-				-0.2
3,578,640	-				-0.2
3,578,674	+		DDA3937_RS15625	0.11	-1.0
3,578,674	+		DDA3937_RS15625	0.11	+1.5
3,578,674	+		DDA3937_RS15625	0.11	-2.0
3,578,674	+		DDA3937_RS15625	0.11	-0.9
3,578,674	+		DDA3937_RS15625	0.11	-0.7
3,578,675	-		DDA3937_RS15625	0.11	-1.0
3,578,675	-		DDA3937_RS15625	0.11	+1.3
3,578,675	-		DDA3937_RS15625	0.11	+1.0
3,578,675	-		DDA3937_RS15625	0.11	-0.2
3,578,675	-		DDA3937_RS15625	0.11	-1.0
3,578,675	-		DDA3937_RS15625	0.11	+2.0
3,578,675	-		DDA3937_RS15625	0.11	-0.1
3,578,675	-		DDA3937_RS15625	0.11	+0.7
3,578,696	+		DDA3937_RS15625	0.12	+2.8
3,578,696	+		DDA3937_RS15625	0.12	-0.8
3,578,696	+		DDA3937_RS15625	0.12	-0.2
3,578,697	-		DDA3937_RS15625	0.12	-1.3
3,578,716	+		DDA3937_RS15625	0.13	-0.7
3,578,716	+		DDA3937_RS15625	0.13	-0.2
3,578,729	-		DDA3937_RS15625	0.14	+1.7
3,578,754	+		DDA3937_RS15625	0.16	-1.8
3,578,832	-		DDA3937_RS15625	0.20	+4.7
3,578,955	+		DDA3937_RS15625	0.28	-1.6
3,578,956	-		DDA3937_RS15625	0.28	+0.1
3,578,957	+		DDA3937_RS15625	0.28	-0.3
3,578,958	-		DDA3937_RS15625	0.28	-0.4
3,579,074	+		DDA3937_RS15625	0.35	-1.8
3,579,074	+		DDA3937_RS15625	0.35	-0.4
3,579,108	+		DDA3937_RS15625	0.37	-0.8
3,579,117	-		DDA3937_RS15625	0.38	-2.4
3,579,171	+		DDA3937_RS15625	0.41	-3.0
3,579,171	+		DDA3937_RS15625	0.41	-0.1
3,579,172	-		DDA3937_RS15625	0.41	+1.8
3,579,173	+		DDA3937_RS15625	0.41	-1.7
3,579,173	+		DDA3937_RS15625	0.41	-0.7
3,579,173	+		DDA3937_RS15625	0.41	-1.5
3,579,174	-		DDA3937_RS15625	0.41	+0.1
3,579,174	-		DDA3937_RS15625	0.41	+0.3
3,579,174	-		DDA3937_RS15625	0.41	+1.3
3,579,174	-		DDA3937_RS15625	0.41	-0.7
3,579,174	-		DDA3937_RS15625	0.41	+0.5
3,579,174	-		DDA3937_RS15625	0.41	-0.2
3,579,179	+		DDA3937_RS15625	0.41	+0.4
3,579,180	-		DDA3937_RS15625	0.41	-0.9
3,579,180	-		DDA3937_RS15625	0.41	+0.2
3,579,180	-		DDA3937_RS15625	0.41	+0.8
3,579,180	-		DDA3937_RS15625	0.41	-0.5
3,579,254	+		DDA3937_RS15625	0.46	+1.0
3,579,254	+		DDA3937_RS15625	0.46	+0.8
3,579,255	-		DDA3937_RS15625	0.46	-1.5
3,579,255	-		DDA3937_RS15625	0.46	-1.6
3,579,258	+		DDA3937_RS15625	0.46	+1.7
3,579,258	+		DDA3937_RS15625	0.46	+2.3
3,579,259	-		DDA3937_RS15625	0.46	+1.2
3,579,259	-		DDA3937_RS15625	0.46	-1.2
3,579,285	-		DDA3937_RS15625	0.48	+0.0
3,579,296	+		DDA3937_RS15625	0.48	+2.9
3,579,297	-		DDA3937_RS15625	0.49	-0.7
3,579,317	+		DDA3937_RS15625	0.50	+1.1
3,579,317	+		DDA3937_RS15625	0.50	+1.0
3,579,317	+		DDA3937_RS15625	0.50	-1.0
3,579,317	+		DDA3937_RS15625	0.50	-0.4
3,579,317	+		DDA3937_RS15625	0.50	-1.1
3,579,317	+		DDA3937_RS15625	0.50	-0.9
3,579,318	-		DDA3937_RS15625	0.50	-0.8
3,579,318	-		DDA3937_RS15625	0.50	-1.7
3,579,318	-		DDA3937_RS15625	0.50	-1.2
3,579,318	-		DDA3937_RS15625	0.50	+2.0
3,579,318	-		DDA3937_RS15625	0.50	+2.5
3,579,357	+		DDA3937_RS15625	0.52	+1.8
3,579,357	+		DDA3937_RS15625	0.52	-1.2